M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_13388

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_13388 36 0.74 Mlig455_030084

Neo: -

Age: -

Region-enriched R6: 6.741/0.01711

 Mlig455_030084 {REF} {Length: 2052} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=124.3]} {Smed: dd_Smed_v6_13880_0_1, dd_Smed_v6_13880_0_1, [Score=112, Expect=6e-26]} {RNA1310_55606} {RNA815_37627}

Cumulative graph for MligTC455_13388

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -14.612 0.969 0.99989 1.00000
RegionR2 7.606 0.969 0.00501 0.06442
RegionR3 4.503 0.969 0.99972 1.00000
RegionR4 0.844 0.969 0.11035 0.32850
RegionR5 3.91 0.969 0.99977 1.00000
RegionR6 6.741 0.969 0.00030 0.01711
RegionR7 0.296 0.969 0.99972 1.00000
RegionR8 -9.288 0.969 0.99966 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.059 0.969 0.99995 1.00000
RegenerationR2 -0.324 0.969 0.23339 0.68109
RegenerationR3 3.258 0.969 0.00519 0.12983
RegenerationR4 3.091 0.969 0.01272 0.17357
RegenerationR5 1.831 0.969 0.07421 0.42636
RegenerationR6 0.205 0.969 0.35176 0.69683
RegenerationBL 1.669 0.969 0.99981 1.00000
RegenerationTP 2.451 0.969 1.00000 1.00000


Genes with expression patterns similar to MligTC455_13388

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_13388 36 0.74 Mlig455_030084

Neo: -

Age: -

Region-enriched R6: 6.741/0.01711

 2 - - - 1.000 1.000 - Mlig455_030084 {REF} {Length: 2052} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=124.3]} {Smed: dd_Smed_v6_13880_0_1, dd_Smed_v6_13880_0_1, [Score=112, Expect=6e-26]} {RNA1310_55606} {RNA815_37627}
2. MligTC455_13389 35 0.74 Mlig455_030163

Neo: -

Age: -

 1.928 - - - 0.970 0.958 - Mlig455_030163 {REF} {Length: 3160} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=97.3]} {Smed: dd_Smed_v6_13880_0_1, dd_Smed_v6_13880_0_1, [Score=93.2, Expect=4e-20]} {RNA1310_55606} {RNA815_37627}
3. MligTC455_33695 6 0.13 Mlig455_018827

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_018827 {REF} {Length: 780} {NoTransDecoderORF} {RNA1310_81716}
4. MligTC455_52384 58 1.21 Mlig455_038635

Neo: -

Age: Up-Down-Up

 ERP44 0.955 - - - 0.955 - - Mlig455_038635 {REF} {Length: 2771} {Pfam: Thioredoxin-like domain [PF13848.8, score=106.4]; Thioredoxin [PF00085.22, score=64.3]; Calsequestrin [PF01216.19, score=19.7]} {Human: ENSG00000023318, ERP44, endoplasmic reticulum protein 44, [Score=243, Expect=4e-76]} {Mouse: ENSMUSG00000028343, Erp44, endoplasmic reticulum protein 44, [Score=251, Expect=1e-79]} {Dmel: FBgn0030734, CG9911, [Score=237, Expect=2e-74]} {Celegans: WBGene00016278, erp-44.1, [Score=238, Expect=3e-75]} {Smed: dd_Smed_v6_2276_0_1, dd_Smed_v6_2276_0_1, [Score=236, Expect=6e-74]} {RNA1509_48143, RNA1509_53790} {RNA1310_14258.1, RNA1509_48143, RNA1509_53790} {RNA1509_48143, RNA1509_53790, RNA815_8957.1}
5. MligTC455_21933 104 2.17 Mlig455_033294

Neo: -

Age: -

 SLC22A6 0.954 - - - - 0.954 - Mlig455_033294 {REF} {Length: 4179} {Pfam: Sugar (and other) transporter [PF00083.26, score=70.8]; Major Facilitator Superfamily [PF07690.18, score=57.7]} {Human: ENSG00000197901, SLC22A6, solute carrier family 22 member 6, [Score=129, Expect=7e-32]} {Mouse: ENSMUSG00000024650, Slc22a6, solute carrier family 22 (organic anion transporter), member 6, [Score=120, Expect=7e-29]} {Dmel: FBgn0038407, CG6126, [Score=143, Expect=4e-37]} {Celegans: WBGene00003842, oct-1, Organic cation transporter 1, [Score=124, Expect=1e-30]} {Smed: dd_Smed_v6_10903_0_1, dd_Smed_v6_10903_0_1, [Score=132, Expect=1e-33]} {RNA1509_33980, RNA1509_37698, RNA1509_53707} {RNA1310_11575, RNA1509_33980, RNA1509_37698, RNA1509_53707} {RNA1509_33980, RNA1509_37698, RNA1509_53707, RNA815_20135}
6. MligTC455_20366 315 6.57 Mlig455_016461, Mlig455_016527, Mlig455_049812

Neo: -

Age: -

 0.952 - - - - 0.952 -

Mlig455_016461 {REF} {Length: 3503} {RNA1509_38265} {RNA1310_8609} {RNA815_9870}

Mlig455_016527 {REF} {Length: 3465} {RNA1509_38265} {RNA1310_8609} {RNA815_9870}

Mlig455_049812 {REF} {Length: 3193} {RNA1509_38265} {RNA1310_8609} {RNA815_9870}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA