M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_13413

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_13413 364 7.59 Mlig455_065839

Neo: -

Age: -

 ITSN1 Mlig455_065839 {REF} {Length: 3116} {Pfam: SH3 domain [PF00018.30, score=147.6]; Variant SH3 domain [PF14604.8, score=137.1]; Pleckstrin homology domain [PF16652.7, score=123.1]; RhoGEF domain [PF00621.22, score=122.5]; Variant SH3 domain [PF07653.19, score=93.3]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=77.4]; C2 domain [PF00168.32, score=71.4]; EF hand [PF00036.34, score=31.3]; EF-hand domain pair [PF13499.8, score=27.5]; EF-hand domain [PF13405.8, score=21.3]} {Human: ENSG00000205726, ITSN1, intersectin 1, [RH, Score=483, Expect=6e-142]} {Mouse: ENSMUSG00000022957, Itsn1, intersectin 1 (SH3 domain protein 1A), [RH, Score=482, Expect=2e-141]} {Dmel: FBgn0023388, Dap160, Dynamin associated protein 160, [RH, Score=289, Expect=5e-80]} {Celegans: WBGene00006405, itsn-1, ITSN (Intersectin) family, [RH, Score=156, Expect=3e-38]} {Smed: dd_Smed_v6_5505_0_1, dd_Smed_v6_5505_0_1, [RH, Score=561, Expect=4e-170]} {RNA1509_25689} {RNA1310_42366} {RNA815_23839}

Cumulative graph for MligTC455_13413

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.633 3.349 0.37537 1.00000
RegionR2 0.475 3.349 0.44513 0.83355
RegionR3 0.674 3.349 0.13958 0.63812
RegionR4 0.528 3.349 0.36366 0.68704
RegionR5 0.843 3.349 0.04207 0.16527
RegionR6 -0.112 3.349 0.83635 1.00000
RegionR7 -1.098 3.349 0.15442 0.72727
RegionR8 0.323 3.349 0.64708 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.147 3.349 0.50956 1.00000
RegenerationR2 -0.135 3.349 0.75508 0.97471
RegenerationR3 0.032 3.349 0.95005 1.00000
RegenerationR4 0.243 3.349 0.66442 0.93991
RegenerationR5 0.353 3.349 0.41763 0.81013
RegenerationR6 0.585 3.349 0.29795 0.64837
RegenerationBL 0.53 3.349 0.46144 0.82848
RegenerationTP 0.259 3.349 0.72660 1.00000


Genes with expression patterns similar to MligTC455_13413

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_13413 364 7.59 Mlig455_065839

Neo: -

Age: -

 ITSN1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_065839 {REF} {Length: 3116} {Pfam: SH3 domain [PF00018.30, score=147.6]; Variant SH3 domain [PF14604.8, score=137.1]; Pleckstrin homology domain [PF16652.7, score=123.1]; RhoGEF domain [PF00621.22, score=122.5]; Variant SH3 domain [PF07653.19, score=93.3]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=77.4]; C2 domain [PF00168.32, score=71.4]; EF hand [PF00036.34, score=31.3]; EF-hand domain pair [PF13499.8, score=27.5]; EF-hand domain [PF13405.8, score=21.3]} {Human: ENSG00000205726, ITSN1, intersectin 1, [RH, Score=483, Expect=6e-142]} {Mouse: ENSMUSG00000022957, Itsn1, intersectin 1 (SH3 domain protein 1A), [RH, Score=482, Expect=2e-141]} {Dmel: FBgn0023388, Dap160, Dynamin associated protein 160, [RH, Score=289, Expect=5e-80]} {Celegans: WBGene00006405, itsn-1, ITSN (Intersectin) family, [RH, Score=156, Expect=3e-38]} {Smed: dd_Smed_v6_5505_0_1, dd_Smed_v6_5505_0_1, [RH, Score=561, Expect=4e-170]} {RNA1509_25689} {RNA1310_42366} {RNA815_23839}
2. MligTC455_28637 506 10.55 Mlig455_063018

Neo: -

Age: -

 PHKA1 1.766 - - - - 0.952 0.814 Mlig455_063018 {REF} {Length: 6578} {TRANSSPLICED} {Pfam: Glycosyl hydrolases family 15 [PF00723.23, score=255.7]} {Human: ENSG00000067177, PHKA1, phosphorylase kinase regulatory subunit alpha 1, [Score=583, Expect=0.0]; ENSG00000044446, PHKA2, phosphorylase kinase regulatory subunit alpha 2, [Score=573, Expect=0.0]} {Mouse: ENSMUSG00000031295, Phka2, phosphorylase kinase alpha 2, [Score=587, Expect=0.0]; ENSMUSG00000034055, Phka1, phosphorylase kinase alpha 1, [Score=582, Expect=0.0]} {Dmel: FBgn0030087, CG7766, [Score=623, Expect=0.0]} {Celegans: WBGene00015754, C14B9.8, Probable phosphorylase b kinase regulatory subunit alpha, [Score=506, Expect=2e-164]} {Smed: dd_Smed_v6_6919_0_1, dd_Smed_v6_6919_0_1, [Score=627, Expect=0.0]} {RNA1509_9598} {RNA1310_11507} {RNA815_11489}
3. MligTC455_19963 260 5.42 Mlig455_000975

Neo: -

Age: Up-Down-Down

 ZAP70 1.761 - - - - 0.802 0.959 Mlig455_000975 {REF} {Length: 5561} {TRANSSPLICED} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=292.1]; Protein kinase domain [PF00069.27, score=142.8]; SH2 domain [PF00017.26, score=111.8]} {Human: ENSG00000115085, ZAP70, zeta chain of T cell receptor associated protein kinase 70, [RH, Score=277, Expect=1e-86]; ENSG00000165025, SYK, spleen associated tyrosine kinase, [RH, Score=273, Expect=2e-81]} {Mouse: ENSMUSG00000026117, Zap70, zeta-chain (TCR) associated protein kinase, [RH, Score=280, Expect=5e-84]; ENSMUSG00000021457, Syk, spleen tyrosine kinase, [RH, Score=269, Expect=5e-80]} {Dmel: FBgn0015295, Shark, SH2 ankyrin repeat kinase, [Score=224, Expect=9e-62]} {Celegans: WBGene00000186, ark-1, Ack-related non-receptor tyrosine kinase, [Score=216, Expect=8e-59]} {Smed: dd_Smed_v6_9075_0_5, dd_Smed_v6_9075_0_5, [RH, Score=603, Expect=0.0]} {RNA1509_12349, RNA1509_56733} {RNA1310_2596, RNA1509_12349, RNA1509_56733} {RNA1509_12349, RNA1509_56733, RNA815_6509}
4. MligTC455_27765 336 7 Mlig455_046449

Neo: -

Age: logFC(26M/2M)=-0.267

 USP24 1.704 - - - - 0.744 0.960 Mlig455_046449 {REF} {Length: 8444} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=146.4]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=61.7]} {Human: ENSG00000162402, USP24, ubiquitin specific peptidase 24, [Score=385, Expect=4e-107]} {Mouse: ENSMUSG00000028514, Usp24, ubiquitin specific peptidase 24, [Score=384, Expect=7e-107]} {Dmel: FBgn0005632, faf, fat facets, [Score=256, Expect=8e-68]} {Celegans: WBGene00011980, T24B8.7, Ubiquitin carboxyl-terminal hydrolase, [Score=191, Expect=2e-48]} {Smed: dd_Smed_v6_2963_0_1, dd_Smed_v6_2963_0_1, [Score=242, Expect=6e-64]} {RNA1509_2363, RNA1509_29997} {RNA1310_218.1, RNA1509_29997} {RNA1509_29997, RNA815_823}
5. MligTC455_37978 861 17.93 Mlig455_044337

Neo: -

Age: -

 CYB5D2 0.97 - - - - - 0.970 Mlig455_044337 {REF} {Length: 1972} {TRANSSPLICED} {Pfam: Cytochrome b5-like Heme/Steroid binding domain [PF00173.30, score=25.0]} {Human: ENSG00000167740, CYB5D2, cytochrome b5 domain containing 2, [RH, Score=88.6, Expect=4e-20]} {Mouse: ENSMUSG00000057778, Cyb5d2, cytochrome b5 domain containing 2, [RH, Score=80.5, Expect=2e-17]} {Dmel: FBgn0030099, CG12056, [RH, Score=67.8, Expect=8e-13]} {Smed: dd_Smed_v6_5886_0_1, dd_Smed_v6_5886_0_1, [RH, Score=97.4, Expect=5e-24]} {RNA1509_18564} {RNA1310_26333.1, RNA1509_18564} {RNA1509_18564, RNA815_13358}
6. MligTC455_11366 258 5.38 Mlig455_016557

Neo: -

Age: -

Region-enriched R5: 1.351/0.01677

 0.957 - - - 0.957 - - Mlig455_016557 {REF} {Length: 3002} {TRANSSPLICED} {Pfam: Afadin- and alpha -actinin-Binding [PF11559.10, score=54.5]} {Mouse: ENSMUSG00000036825, Ssx2ip, synovial sarcoma, X 2 interacting protein, [RH, Score=92.0, Expect=1e-19]} {RNA1509_10737, RNA1509_37638, RNA1509_45686} {RNA1310_9399, RNA1509_10737, RNA1509_37638, RNA1509_45686} {RNA1509_10737, RNA1509_37638, RNA1509_45686, RNA815_26177}
7. MligTC455_50020 590 12.29 Mlig455_050575

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-4.649

Region-enriched R4: 1.440/0.03021

 NSD2 0.957 - - - - - 0.957 Mlig455_050575 {REF} {Length: 4368} {TRANSSPLICED} {Pfam: AWS domain [PF17907.3, score=47.8]; SET domain [PF00856.30, score=36.1]; PHD-finger [PF00628.31, score=36.0]; NSD Cys-His rich domain [PF17982.3, score=33.7]; PWWP domain [PF00855.19, score=29.5]} {Human: ENSG00000109685, NSD2, nuclear receptor binding SET domain protein 2, [Score=427, Expect=1e-130]; ENSG00000147548, NSD3, nuclear receptor binding SET domain protein 3, [Score=412, Expect=2e-124]} {Mouse: ENSMUSG00000057406, Nsd2, nuclear receptor binding SET domain protein 2, [Score=430, Expect=1e-131]; ENSMUSG00000021488, Nsd1, nuclear receptor-binding SET-domain protein 1, [Score=411, Expect=3e-122]} {Dmel: FBgn0039559, NSD, Nuclear receptor binding SET domain protein, [Score=246, Expect=2e-67]} {Celegans: WBGene00016603, met-1, Histone-lysine N-methyltransferase, [Score=79.0, Expect=1e-14]} {Smed: dd_Smed_v6_4755_0_2, dd_Smed_v6_4755_0_2, [Score=290, Expect=8e-86]} {RNA1509_8385} {RNA1310_4002} {RNA815_849}
8. MligTC455_50021 605 12.6 Mlig455_064511

Neo: Neoblast

Age: Down-Down-Up

Region-enriched R4: 1.512/0.02076

 NSD2 0.956 - - - - - 0.956 Mlig455_064511 {REF} {Length: 4783} {TRANSSPLICED} {Pfam: PWWP domain [PF00855.19, score=113.6]; SET domain [PF00856.30, score=80.1]; AWS domain [PF17907.3, score=47.6]; PHD-finger [PF00628.31, score=38.8]; NSD Cys-His rich domain [PF17982.3, score=32.8]} {Human: ENSG00000109685, NSD2, nuclear receptor binding SET domain protein 2, [RH, Score=691, Expect=0.0]; ENSG00000165671, NSD1, nuclear receptor binding SET domain protein 1, [RH, Score=667, Expect=0.0]; ENSG00000147548, NSD3, nuclear receptor binding SET domain protein 3, [RH, Score=664, Expect=0.0]} {Mouse: ENSMUSG00000057406, Nsd2, nuclear receptor binding SET domain protein 2, [RH, Score=696, Expect=0.0]; ENSMUSG00000021488, Nsd1, nuclear receptor-binding SET-domain protein 1, [RH, Score=674, Expect=0.0]} {Dmel: FBgn0039559, NSD, Nuclear receptor binding SET domain protein, [RH, Score=431, Expect=1e-130]} {Celegans: WBGene00016603, met-1, Histone-lysine N-methyltransferase, [Score=142, Expect=5e-34]} {Smed: dd_Smed_v6_4755_0_1, dd_Smed_v6_4755_0_1, [RH, Score=582, Expect=0.0]} {RNA1509_8385} {RNA1310_4002} {RNA815_849}
9. MligTC455_22965 433 9.03 Mlig455_019042

Neo: -

Age: Down-Down-Up

 0.951 - - - - - 0.951 Mlig455_019042 {REF} {Length: 1514} {Pfam: Sleepless protein [PF17064.7, score=26.9]} {Smed: dd_Smed_v6_3898_0_1, dd_Smed_v6_3898_0_1, [RH, Score=69.3, Expect=1e-15]} {RNA1509_27313, RNA1509_54222} {RNA1310_27569.1, RNA1509_54222} {RNA1509_54222, RNA815_11340}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA