M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_13693

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_13693 12 0.25 Mlig455_071076

Neo: -

Age: -

 Mlig455_071076 {REF} {Length: 122} {NoTransDecoderORF} {RNA1509_41368} {RNA1310_3544} {RNA815_2965}

Cumulative graph for MligTC455_13693

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_13693

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_13693 12 0.25 Mlig455_071076

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_071076 {REF} {Length: 122} {NoTransDecoderORF} {RNA1509_41368} {RNA1310_3544} {RNA815_2965}
2. MligTC455_41738 22 0.45 Mlig455_049770

Neo: -

Age: -

 PCIF1 0.987 - - - - 0.987 - Mlig455_049770 {REF} {Length: 2631} {Pfam: Phosphorylated CTD interacting factor 1 WW domain [PF12237.10, score=100.0]} {Human: ENSG00000100982, PCIF1, PDX1 C-terminal inhibiting factor 1, [Score=63.2, Expect=3e-10]} {Mouse: ENSMUSG00000039849, Pcif1, PDX1 C-terminal inhibiting factor 1, [Score=62.4, Expect=4e-10]} {Smed: dd_Smed_v6_4647_0_1, dd_Smed_v6_4647_0_1, [Score=162, Expect=8e-46]} {RNA1310_17554.1} {RNA815_8653}
3. MligTC455_34465 21 0.44 Mlig455_064507

Neo: -

Age: Up-Down-Down

 0.982 - - - - 0.982 - Mlig455_064507 {REF} {Length: 2980} {RNA1509_6735} {RNA1310_1341.1, RNA1509_6735} {RNA1509_6735, RNA815_2761}
4. MligTC455_06059 10 0.21 Mlig455_046890

Neo: -

Age: -

 TRIM71 0.978 - - - - 0.978 - Mlig455_046890 {REF} {Length: 1815} {Pfam: NHL repeat [PF01436.23, score=53.2]} {Human: ENSG00000206557, TRIM71, tripartite motif containing 71, [Score=89.0, Expect=4e-18]} {Mouse: ENSMUSG00000079259, Trim71, tripartite motif-containing 71, [Score=89.0, Expect=3e-18]} {Dmel: FBgn0265356, tn, thin, [Score=88.2, Expect=4e-18]} {Celegans: WBGene00003597, nhl-1, RING finger protein nhl-1, [Score=78.6, Expect=3e-15]} {Smed: dd_Smed_v6_26017_0_1, dd_Smed_v6_26017_0_1, [RH, Score=124, Expect=1e-31]} {RNA1310_147071}
5. MligTC455_29592 22 0.45 Mlig455_022466

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_022466 {REF} {Length: 995} {RNA1310_74802.1} {RNA815_59435}
6. MligTC455_07206 105 2.19 Mlig455_032806

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_032806 {REF} {Length: 618} {NoTransDecoderORF} {RNA1310_136285}
7. MligTC455_56960 9 0.19 Mlig455_022634

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_022634 {REF} {Length: 1070} {NoTransDecoderORF} {RNA1509_8095} {RNA1310_116046} {RNA815_45896}
8. MligTC455_00383 3 0.07 Mlig455_033261

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_033261 {REF} {Length: 307} {NoTransDecoderORF}
9. MligTC455_17241 51 1.06 Mlig455_031641

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_031641 {REF} {Length: 1430} {NoTransDecoderORF} {RNA1509_31207} {RNA815_58763}
10. MligTC455_50716 197 4.11 Mlig455_021549

Neo: Germline

Age: Down-Up-Down

 0.965 - - - - 0.965 - Mlig455_021549 {REF} {Length: 2023} {RNA1509_28951, RNA1509_47137} {RNA1310_7791, RNA1509_28951, RNA1509_47137} {RNA1509_28951, RNA1509_47137, RNA815_6723}
11. MligTC455_11936 211 4.39 Mlig455_030280

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.982

 SGK494 0.964 - - - - 0.964 - Mlig455_030280 {REF} {Length: 3532} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=180.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=87.8]; Phosphotransferase enzyme family [PF01636.25, score=21.2]; Kinase-like [PF14531.8, score=19.6]} {Human: ENSG00000167524, SGK494, uncharacterized serine/threonine-protein kinase SgK494, [RH, Score=207, Expect=2e-61]} {Mouse: ENSMUSG00000097721, Rps6kb2, ribosomal protein S6 kinase, polypeptide 2, [Score=173, Expect=5e-48]; ENSMUSG00000024830, Rps6kb2, ribosomal protein S6 kinase, polypeptide 2, [Score=173, Expect=5e-48]; ENSMUSG00000020516, Rps6kb1, ribosomal protein S6 kinase, polypeptide 1, [Score=172, Expect=4e-47]; ENSMUSG00000029053, Prkcz, protein kinase C, zeta, [Score=167, Expect=2e-46]} {Dmel: FBgn0283473, S6KL, S6 Kinase Like, [RH, Score=195, Expect=3e-56]} {Celegans: WBGene00017950, F31E3.2, Putative serine/threonine-protein kinase F31E3.2, [RH, Score=202, Expect=1e-59]} {Smed: dd_Smed_v6_7868_0_1, dd_Smed_v6_7868_0_1, [RH, Score=292, Expect=2e-92]} {RNA1509_34459} {RNA1310_14015.2} {RNA815_17648}
12. MligTC455_50763 18 0.37 Mlig455_057640, Mlig455_060151

Neo: -

Age: -

 0.961 - - - - 0.961 -

Mlig455_057640 {REF} {Length: 1837} {NoTransDecoderORF} {RNA1310_137366}

Mlig455_060151 {REF} {Length: 1920} {NoTransDecoderORF} {RNA1310_137366}
13. MligTC455_33202 92 1.92 Mlig455_016989, Mlig455_021240, Mlig455_062989

Neo: -

Age: -

 FCN2 0.96 - - - - 0.960 -

Mlig455_016989 {REF} {Length: 3214} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=143.0]} {Human: ENSG00000160339, FCN2, ficolin 2, [Score=135, Expect=2e-37]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=130, Expect=5e-34]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=128, Expect=1e-33]; ENSMUSG00000026938, Fcna, ficolin A, [Score=126, Expect=1e-33]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=125, Expect=2e-32]; ENSMUSG00000038742, Angptl6, angiopoietin-like 6, [Score=124, Expect=5e-32]; ENSMUSG00000026835, Fcnb, ficolin B, [Score=122, Expect=2e-32]} {Dmel: FBgn0034160, CG5550, [RH, Score=136, Expect=2e-38]} {Celegans: WBGene00017013, ensh-1, [RH, Score=66.2, Expect=4e-12]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=46.2, Expect=1e-06]} {RNA1509_26827} {RNA1310_48119} {RNA815_52558}

Mlig455_021240 {REF} {Length: 2191} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=112.3]} {Human: ENSG00000160339, FCN2, ficolin 2, [Score=104, Expect=6e-26]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=99.0, Expect=3e-23]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=98.2, Expect=4e-23]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=97.4, Expect=7e-23]; ENSMUSG00000026938, Fcna, ficolin A, [Score=97.1, Expect=3e-23]; ENSMUSG00000038742, Angptl6, angiopoietin-like 6, [Score=95.5, Expect=3e-22]; ENSMUSG00000042436, Mfap4, microfibrillar-associated protein 4, [Score=94.4, Expect=1e-22]; ENSMUSG00000026835, Fcnb, ficolin B, [Score=93.6, Expect=4e-22]} {Dmel: FBgn0034160, CG5550, [Score=104, Expect=9e-27]} {Celegans: WBGene00017013, ensh-1, [Score=52.8, Expect=8e-08]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=46.6, Expect=8e-07]} {RNA1509_26827} {RNA1310_48119} {RNA815_52558}

Mlig455_062989 {REF} {Length: 1896} {NoTransDecoderORF} {RNA1509_54825} {RNA1310_118627, RNA1509_54825} {RNA1509_54825, RNA815_47526}
14. MligTC455_48037 46 0.95 Mlig455_030992, Mlig455_069434

Neo: -

Age: Up-Down-Down

 0.958 - - - - 0.958 -

Mlig455_030992 {REF} {Length: 2903} {Pfam: Immunoglobulin domain [PF13895.8, score=36.4]; ZU5 domain [PF00791.22, score=23.4]; Izumo-like Immunoglobulin domain [PF16706.7, score=22.1]} {RNA1509_38267} {RNA1310_24280.2} {RNA815_37589}

Mlig455_069434 {REF} {Length: 2313} {Pfam: Immunoglobulin domain [PF13895.8, score=39.1]; ZU5 domain [PF00791.22, score=21.3]; Izumo-like Immunoglobulin domain [PF16706.7, score=20.8]; Immunoglobulin domain [PF13927.8, score=20.1]; Immunoglobulin I-set domain [PF07679.18, score=19.5]} {RNA1310_72516.1} {RNA815_8574}
15. MligTC455_18533 46 0.96 Mlig455_013010

Neo: -

Age: Down-Down-Up

 LOXL3 0.957 - - - - 0.957 - Mlig455_013010 {REF} {Length: 2040} {Pfam: Lysyl oxidase [PF01186.19, score=256.6]; Scavenger receptor cysteine-rich domain [PF00530.20, score=103.8]; Scavenger receptor cysteine-rich domain [PF15494.8, score=30.0]} {Human: ENSG00000115318, LOXL3, lysyl oxidase like 3, [RH, Score=272, Expect=2e-83]} {Mouse: ENSMUSG00000000693, Loxl3, lysyl oxidase-like 3, [RH, Score=275, Expect=2e-83]; ENSMUSG00000034205, Loxl2, lysyl oxidase-like 2, [RH, Score=265, Expect=3e-79]} {Dmel: FBgn0034660, lox2, lysyl oxidase-like 2, [Score=308, Expect=1e-98]} {Smed: dd_Smed_v6_10591_0_1, dd_Smed_v6_10591_0_1, [Score=307, Expect=8e-99]} {RNA1509_21249} {RNA1310_15268.1, RNA1509_21249} {RNA1509_21249, RNA815_5714}
16. MligTC455_01573 64 1.33 Mlig455_037927

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_037927 {REF} {Length: 434} {NoTransDecoderORF}
17. MligTC455_28575 27 0.55 Mlig455_028366, Mlig455_052765

Neo: -

Age: -

 0.956 - - - - 0.956 -

Mlig455_028366 {REF} {Length: 771} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_22744} {RNA815_55880}

Mlig455_052765 {REF} {Length: 1415} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_15798} {RNA1310_22744} {RNA815_55880}
18. MligTC455_19450 194 4.05 Mlig455_065775, Mlig455_065798

Neo: -

Age: -

 0.955 - - - - 0.955 -

Mlig455_065775 {REF} {Length: 1864} {Pfam: Innexin [PF00876.20, score=26.9]} {RNA1509_47060} {RNA1310_19756.1} {RNA815_16217}

Mlig455_065798 {REF} {Length: 1809} {Pfam: Innexin [PF00876.20, score=26.9]} {RNA1509_47060} {RNA1310_19756.1} {RNA815_16217}
19. MligTC455_29874 65 1.36 Mlig455_037947, Mlig455_068699

Neo: -

Age: logFC(26M/2M)=-0.467

 ANKRD50 0.955 - - - - 0.955 -

Mlig455_037947 {REF} {Length: 4099} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=309.9]; Ankyrin repeat [PF00023.32, score=295.0]; Ankyrin repeat [PF13606.8, score=230.6]; Ankyrin repeats (many copies) [PF13637.8, score=228.6]; Ankyrin repeats (many copies) [PF13857.8, score=200.7]; Glutamine amidotransferase domain [PF13537.8, score=68.9]; PEGA domain [PF08308.13, score=35.0]; Mab-21 protein [PF03281.16, score=29.5]; Nucleoplasmin/nucleophosmin domain [PF03066.17, score=26.4]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=276, Expect=2e-75]; ENSG00000029534, ANK1, ankyrin 1, [Score=270, Expect=5e-73]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=274, Expect=8e-75]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=256, Expect=7e-69]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=258, Expect=1e-69]} {Smed: dd_Smed_v6_2072_0_29, dd_Smed_v6_2072_0_29, [Score=256, Expect=2e-71]} {RNA1509_26004, RNA1509_28959} {RNA1310_3906.1, RNA1509_28959} {RNA1509_28959, RNA815_1664.1}

Mlig455_068699 {REF} {Length: 2234} {Pfam: Mab-21 protein [PF03281.16, score=31.1]} {RNA1509_26004} {RNA1310_3906.1} {RNA815_1664.1}
20. MligTC455_40841 16 0.34 Mlig455_003915, Mlig455_022710

Neo: -

Age: -

 0.955 - - - - 0.955 -

Mlig455_003915 {REF} {Length: 3963} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=150.6]} {Mouse: ENSMUSG00000030873, Scnn1b, sodium channel, nonvoltage-gated 1 beta, [Score=62.0, Expect=1e-09]} {Celegans: WBGene00009073, delm-1, DEgenerin Linked to Mechanosensation, [Score=64.3, Expect=1e-10]} {Smed: dd_Smed_v6_9790_0_1, dd_Smed_v6_9790_0_1, [Score=196, Expect=2e-55]} {RNA1509_1108} {RNA1310_105330} {RNA815_1603}

Mlig455_022710 {REF} {Length: 2064} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=69.1]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=42.9]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=27.5]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=27.0]} {Mouse: ENSMUSG00000039079, Trhr2, thyrotropin releasing hormone receptor 2, [Score=59.7, Expect=2e-09]} {Dmel: FBgn0035385, FMRFaR, FMRFamide Receptor, [Score=71.2, Expect=4e-13]} {Celegans: WBGene00018728, frpr-8, FMRFamide Peptide Receptor family, [Score=54.7, Expect=6e-08]} {Smed: dd_Smed_v6_14651_0_1, dd_Smed_v6_14651_0_1, [RH, Score=161, Expect=9e-46]} {RNA1509_10628} {RNA1310_9160} {RNA815_10117.1}
21. MligTC455_46343 76 1.57 Mlig455_008895, Mlig455_016535

Neo: -

Age: -

 0.954 - - - - 0.954 -

Mlig455_008895 {REF} {Length: 5485} {RNA1509_28528} {RNA1310_45684, RNA1509_28528} {RNA1509_28528, RNA815_21057}

Mlig455_016535 {REF} {Length: 2868} {RNA1509_28528} {RNA1310_45684} {RNA815_21057}
22. MligTC455_50837 14 0.29 Mlig455_013450

Neo: -

Age: -

 PLSCR5 0.954 - - - - 0.954 - Mlig455_013450 {REF} {Length: 1455} {Pfam: Scramblase [PF03803.17, score=121.2]} {Human: ENSG00000231213, PLSCR5, phospholipid scramblase family member 5, [Score=102, Expect=2e-24]; ENSG00000188313, PLSCR1, phospholipid scramblase 1, [Score=97.8, Expect=3e-22]} {Mouse: ENSMUSG00000095654, Plscr5, phospholipid scramblase family, member 5, [Score=102, Expect=1e-24]; ENSMUSG00000032369, Plscr1, phospholipid scramblase 1, [Score=97.8, Expect=2e-22]} {Dmel: FBgn0035390, scramb2, scramblase 2, [Score=87.8, Expect=2e-19]} {Celegans: WBGene00014200, scrm-2, Phospholipid scramblase, [Score=102, Expect=9e-25]} {Smed: dd_Smed_v6_4312_0_2, dd_Smed_v6_4312_0_2, [Score=92.4, Expect=1e-21]} {RNA1310_119369}
23. MligTC455_56085 3 0.06 Mlig455_011162

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_011162 {REF} {Length: 371} {NoTransDecoderORF}
24. MligTC455_11701 54 1.12 Mlig455_042837, Mlig455_045855, Mlig455_045871

Neo: -

Age: -

 0.953 - - - - 0.953 -

Mlig455_042837 {REF} {Length: 487} {RNA1310_85827} {RNA815_46819}

Mlig455_045855 {REF} {Length: 487} {RNA1310_85827} {RNA815_46819}

Mlig455_045871 {REF} {Length: 487} {RNA1310_85827} {RNA815_46819}
25. MligTC455_25414 32 0.66 Mlig455_000371

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.650

 TRPM3 0.951 - - - - 0.951 - Mlig455_000371 {REF} {Length: 4372} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=75.7]; Ankyrin repeats (many copies) [PF13637.8, score=64.1]; Ankyrin repeat [PF13606.8, score=39.6]; Ankyrin repeats (many copies) [PF13857.8, score=31.8]; Ankyrin repeat [PF00023.32, score=27.0]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=80.1, Expect=2e-14]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=79.3, Expect=3e-14]; ENSMUSG00000027365, Trpm7, transient receptor potential cation channel, subfamily M, member 7, [Score=76.6, Expect=2e-13]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=78.6, Expect=3e-14]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=64.7, Expect=4e-10]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=79.3, Expect=8e-15]} {RNA1509_18305} {RNA1310_1324.1} {RNA815_16630}
26. MligTC455_23422 14 0.29 Mlig455_020850

Neo: -

Age: Down-Up-Down

 TNKS 0.95 - - - - 0.950 - Mlig455_020850 {REF} {Length: 2594} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=50.9]; Ankyrin repeat [PF00023.32, score=45.5]; Ankyrin repeat [PF13606.8, score=41.2]; Ankyrin repeats (many copies) [PF13637.8, score=37.3]; Ankyrin repeats (many copies) [PF13857.8, score=32.3]} {Human: ENSG00000173273, TNKS, tankyrase, [Score=69.7, Expect=1e-11]; ENSG00000285372, AC270292.3, tankyrase, [Score=69.7, Expect=1e-11]; ENSG00000101745, ANKRD12, ankyrin repeat domain 12, [Score=68.6, Expect=3e-11]} {Mouse: ENSMUSG00000031529, Tnks, tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase, [Score=70.5, Expect=4e-12]; ENSMUSG00000034647, Ankrd12, ankyrin repeat domain 12, [Score=68.9, Expect=1e-11]} {Dmel: FBgn0036814, CG14073, [Score=66.2, Expect=7e-11]} {Celegans: WBGene00001582, gfi-2, GEI-4 (Four) Interacting protein, [Score=52.4, Expect=6e-07]} {Smed: dd_Smed_v6_3062_0_5, dd_Smed_v6_3062_0_5, [Score=65.1, Expect=8e-12]} {RNA1509_48133} {RNA1310_6822, RNA1509_48133} {RNA1509_48133, RNA815_2586}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA