M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_13721

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_13721 25 0.52 Mlig455_056850

Neo: -

Age: logFC(26M/2M)=0.455

 NPC1 Mlig455_056850 {REF} {Length: 4208} {TRANSSPLICED} {Pfam: Patched family [PF02460.20, score=275.3]; Niemann-Pick C1 N terminus [PF16414.7, score=203.7]; Sterol-sensing domain of SREBP cleavage-activation [PF12349.10, score=180.2]; MMPL family [PF03176.17, score=25.0]} {Human: ENSG00000141458, NPC1, NPC intracellular cholesterol transporter 1, [RH, Score=1019, Expect=0.0]} {Mouse: ENSMUSG00000024413, Npc1, NPC intracellular cholesterol transporter 1, [RH, Score=1022, Expect=0.0]} {Dmel: FBgn0024320, Npc1a, Niemann-Pick type C-1a, [RH, Score=962, Expect=0.0]} {Celegans: WBGene00003561, ncr-1, Niemann-Pick C1 protein homolog 1, [RH, Score=523, Expect=3e-162]} {Smed: dd_Smed_v6_5175_0_1, dd_Smed_v6_5175_0_1, [RH, Score=1056, Expect=0.0]} {RNA1509_3957} {RNA1310_1218.1, RNA1509_3957} {RNA1509_3957, RNA815_337}

Cumulative graph for MligTC455_13721

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_13721

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_13721 25 0.52 Mlig455_056850

Neo: -

Age: logFC(26M/2M)=0.455

 NPC1 1 - - - - - 1.000 Mlig455_056850 {REF} {Length: 4208} {TRANSSPLICED} {Pfam: Patched family [PF02460.20, score=275.3]; Niemann-Pick C1 N terminus [PF16414.7, score=203.7]; Sterol-sensing domain of SREBP cleavage-activation [PF12349.10, score=180.2]; MMPL family [PF03176.17, score=25.0]} {Human: ENSG00000141458, NPC1, NPC intracellular cholesterol transporter 1, [RH, Score=1019, Expect=0.0]} {Mouse: ENSMUSG00000024413, Npc1, NPC intracellular cholesterol transporter 1, [RH, Score=1022, Expect=0.0]} {Dmel: FBgn0024320, Npc1a, Niemann-Pick type C-1a, [RH, Score=962, Expect=0.0]} {Celegans: WBGene00003561, ncr-1, Niemann-Pick C1 protein homolog 1, [RH, Score=523, Expect=3e-162]} {Smed: dd_Smed_v6_5175_0_1, dd_Smed_v6_5175_0_1, [RH, Score=1056, Expect=0.0]} {RNA1509_3957} {RNA1310_1218.1, RNA1509_3957} {RNA1509_3957, RNA815_337}
2. MligTC455_18468 49 1.02 Mlig455_014453

Neo: -

Age: -

Region-enriched R4: 3.552/0.03158

 0.957 - - - - - 0.957 Mlig455_014453 {REF} {Length: 1446} {Pfam: Lipase (class 3) [PF01764.27, score=96.6]} {Celegans: WBGene00022457, Y110A7A.7, [Score=158, Expect=6e-45]} {RNA1509_36256} {RNA1310_22408} {RNA815_9975}
3. MligTC455_10960 13 0.28 Mlig455_025471, Mlig455_071146

Neo: -

Age: -

 0.956 - - - - - 0.956

Mlig455_025471 {REF} {Length: 1421} {RNA1310_50786.2}

Mlig455_071146 {REF} {Length: 1430} {RNA1310_50786.2}
4. MligTC455_06004 90 1.87 Mlig455_001723, Mlig455_001735, Mlig455_063322, Mlig455_063326

Neo: -

Age: Up-Up-Down

Region-enriched R4: 4.350/0.02066

 SLC22A4, SLC22A5, SLC22A7 0.95 - - - - - 0.950

Mlig455_001723 {REF} {Length: 2386} {TRANSSPLICED} {Pfam: Sugar (and other) transporter [PF00083.26, score=61.3]; Major Facilitator Superfamily [PF07690.18, score=61.2]} {Human: ENSG00000197375, SLC22A5, solute carrier family 22 member 5, [Score=177, Expect=2e-48]} {Mouse: ENSMUSG00000018900, Slc22a5, solute carrier family 22 (organic cation transporter), member 5, [Score=191, Expect=1e-53]; ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=185, Expect=3e-51]} {Dmel: FBgn0019952, Orct, Organic cation transporter, [Score=146, Expect=2e-37]} {Celegans: WBGene00003842, oct-1, Organic cation transporter 1, [Score=134, Expect=3e-33]} {Smed: dd_Smed_v6_10826_0_2, dd_Smed_v6_10826_0_2, [Score=149, Expect=1e-38]} {RNA1509_45235} {RNA1310_37752} {RNA815_8805}

Mlig455_001735 {REF} {Length: 1708} {TRANSSPLICED} {Pfam: Sugar (and other) transporter [PF00083.26, score=32.4]; Major Facilitator Superfamily [PF07690.18, score=29.2]} {Human: ENSG00000137204, SLC22A7, solute carrier family 22 member 7, [Score=120, Expect=2e-30]; ENSG00000197208, SLC22A4, solute carrier family 22 member 4, [Score=114, Expect=2e-28]} {Mouse: ENSMUSG00000018900, Slc22a5, solute carrier family 22 (organic cation transporter), member 5, [Score=119, Expect=4e-30]} {Dmel: FBgn0019952, Orct, Organic cation transporter, [Score=95.5, Expect=5e-22]} {Celegans: WBGene00003842, oct-1, Organic cation transporter 1, [Score=83.2, Expect=7e-18]} {Smed: dd_Smed_v6_10826_0_1, dd_Smed_v6_10826_0_1, [RH, Score=99.4, Expect=1e-24]} {RNA1509_45235} {RNA1310_37752} {RNA815_8805}

Mlig455_063322 {REF} {Length: 1717} {Pfam: Sugar (and other) transporter [PF00083.26, score=63.2]; Major Facilitator Superfamily [PF07690.18, score=58.8]} {Human: ENSG00000197208, SLC22A4, solute carrier family 22 member 4, [Score=159, Expect=5e-42]; ENSG00000197375, SLC22A5, solute carrier family 22 member 5, [Score=158, Expect=1e-41]} {Mouse: ENSMUSG00000018900, Slc22a5, solute carrier family 22 (organic cation transporter), member 5, [Score=175, Expect=7e-48]; ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=170, Expect=4e-46]; ENSMUSG00000020334, Slc22a4, solute carrier family 22 (organic cation transporter), member 4, [Score=167, Expect=4e-45]} {Dmel: FBgn0038404, CG8925, [Score=122, Expect=2e-29]} {Celegans: WBGene00003837, oat-1, Multispecific organic anion transporter; Organic Anion Transporter, [Score=119, Expect=9e-29]} {Smed: dd_Smed_v6_10826_0_2, dd_Smed_v6_10826_0_2, [Score=145, Expect=1e-37]} {RNA1509_45235} {RNA1310_37752} {RNA815_8805}

Mlig455_063326 {REF} {Length: 2384} {TRANSSPLICED} {Pfam: Sugar (and other) transporter [PF00083.26, score=61.3]; Major Facilitator Superfamily [PF07690.18, score=59.5]} {Human: ENSG00000197375, SLC22A5, solute carrier family 22 member 5, [Score=197, Expect=2e-55]} {Mouse: ENSMUSG00000018900, Slc22a5, solute carrier family 22 (organic cation transporter), member 5, [Score=213, Expect=3e-61]; ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=206, Expect=6e-59]} {Dmel: FBgn0019952, Orct, Organic cation transporter, [Score=161, Expect=7e-43]} {Celegans: WBGene00003842, oct-1, Organic cation transporter 1, [Score=148, Expect=4e-38]} {Smed: dd_Smed_v6_10826_0_2, dd_Smed_v6_10826_0_2, [Score=172, Expect=8e-47]} {RNA1509_45235} {RNA1310_37752} {RNA815_8805}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA