M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_13980

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_13980 41 0.84 Mlig455_062297

Neo: -

Age: -

 Mlig455_062297 {REF} {Length: 1552} {NoTransDecoderORF} {RNA1310_70484} {RNA815_39773}

Cumulative graph for MligTC455_13980

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.829 1.072 1.00000 1.00000
RegionR2 2.231 1.072 0.25914 0.63996
RegionR3 -0.818 1.072 0.99957 1.00000
RegionR4 0.019 1.072 0.56419 0.88349
RegionR5 2.867 1.072 0.02185 0.10341
RegionR6 1.684 1.072 0.26689 0.85502
RegionR7 -0.919 1.072 0.99961 1.00000
RegionR8 -1.236 1.072 0.99960 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.049 1.072 0.32828 1.00000
RegenerationR2 2.524 1.072 0.04749 0.35975
RegenerationR3 3.808 1.072 0.03627 0.33746
RegenerationR4 -0.95 1.072 0.44552 0.83975
RegenerationR5 -1.834 1.072 0.15050 0.56833
RegenerationR6 1.737 1.072 0.24484 0.59274
RegenerationBL 4.239 1.072 0.03159 0.19893
RegenerationTP 4.817 1.072 0.06055 0.39872


Genes with expression patterns similar to MligTC455_13980

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_13980 41 0.84 Mlig455_062297

Neo: -

Age: -

 3 - 1.000 - 1.000 1.000 - Mlig455_062297 {REF} {Length: 1552} {NoTransDecoderORF} {RNA1310_70484} {RNA815_39773}
2. MligTC455_23828 57 1.18 Mlig455_026697

Neo: -

Age: -

 0.978 - - - 0.978 - - Mlig455_026697 {REF} {Length: 468} {NoTransDecoderORF}
3. MligTC455_41960 6508 135.58 Mlig455_064540

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.540

Region-enriched R2: 2.143/0.00375
Region-enriched R8: 2.136/0.00048
Region-enriched R7: 1.650/0.01262

 CALM2 0.965 - - - 0.965 - - Mlig455_064540 {REF} {Length: 3428} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=120.0]; EF-hand domain pair [PF13833.8, score=76.2]; EF-hand domain [PF08976.13, score=69.6]; EF hand [PF00036.34, score=67.4]; EF-hand domain [PF13405.8, score=64.4]; EF-hand domain [PF14658.8, score=35.9]; Family of unknown function (DUF5580) [PF17743.3, score=33.5]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=62.8, Expect=2e-10]; ENSG00000178372, CALML5, calmodulin like 5, [Score=60.5, Expect=5e-10]; ENSG00000160014, CALM3, calmodulin 3, [Score=60.1, Expect=7e-10]; ENSG00000198668, CALM1, calmodulin 1, [Score=60.1, Expect=7e-10]; ENSG00000175544, CABP4, calcium binding protein 4, [Score=59.7, Expect=8e-09]} {Mouse: ENSMUSG00000022441, Efcab6, EF-hand calcium binding domain 6, [Score=108, Expect=3e-23]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=58.9, Expect=9e-10]} {Celegans: WBGene00006861, cal-5, CALmodulin related genes, [Score=61.2, Expect=1e-10]} {Smed: dd_Smed_v6_20435_0_1, dd_Smed_v6_20435_0_1, [RH, Score=168, Expect=3e-44]} {RNA1509_9023} {RNA1310_4944.1} {RNA815_7678}
4. MligTC455_45462 20 0.41 Mlig455_069728

Neo: -

Age: -

 0.965 - - - 0.965 - - Mlig455_069728 {REF} {Length: 2502} {RNA1509_17147} {RNA1310_99424} {RNA815_51076}
5. MligTC455_17987 83 1.74 Mlig455_055688

Neo: -

Age: -

 KCNQ2 0.963 - - - 0.963 - - Mlig455_055688 {REF} {Length: 3961} {Pfam: Ion channel [PF07885.18, score=54.0]; Ligand-gated ion channel [PF00060.28, score=36.1]; Ion transport protein [PF00520.33, score=27.3]} {Human: ENSG00000075043, KCNQ2, potassium voltage-gated channel subfamily Q member 2, [Score=51.6, Expect=2e-06]; ENSG00000162975, KCNF1, potassium voltage-gated channel modifier subfamily F member 1, [Score=51.2, Expect=2e-06]; ENSG00000185760, KCNQ5, potassium voltage-gated channel subfamily Q member 5, [Score=51.2, Expect=3e-06]; ENSG00000281151, KCNQ2, potassium voltage-gated channel subfamily Q member 2, [Score=49.3, Expect=1e-05]} {Mouse: ENSMUSG00000051726, Kcnf1, potassium voltage-gated channel, subfamily F, member 1, [Score=51.6, Expect=1e-06]; ENSMUSG00000016346, Kcnq2, potassium voltage-gated channel, subfamily Q, member 2, [Score=51.2, Expect=2e-06]; ENSMUSG00000028033, Kcnq5, potassium voltage-gated channel, subfamily Q, member 5, [Score=51.2, Expect=2e-06]; ENSMUSG00000047298, Kcnv2, potassium channel, subfamily V, member 2, [Score=50.1, Expect=4e-06]} {Celegans: WBGene00003775, nmr-2, NMDA class glutamate Receptor; NMDA-type ionotropic glutamate receptor NMR-2, [Score=56.2, Expect=3e-08]} {Smed: dd_Smed_v6_19025_0_1, dd_Smed_v6_19025_0_1, [Score=46.2, Expect=3e-06]} {RNA1509_39194} {RNA1310_38701} {RNA815_27652}
6. MligTC455_30093 165 3.43 Mlig455_006983

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.588

 0.962 - - - 0.962 - - Mlig455_006983 {REF} {Length: 1958} {Pfam: Rel homology DNA-binding domain [PF00554.24, score=60.6]; Uncharacterised protein family (UPF0172) [PF03665.15, score=18.8]} {RNA1509_55534} {RNA1310_1280.1} {RNA815_6392}
7. MligTC455_19328 99 2.06 Mlig455_062531

Neo: -

Age: Down-Up-Down

Region-enriched R2: 4.972/0.00232

 0.96 - - - 0.960 - - Mlig455_062531 {REF} {Length: 1929} {NoTransDecoderORF} {RNA1509_36058} {RNA1310_3092} {RNA815_16673}
8. MligTC455_28436 124 2.59 Mlig455_066143

Neo: -

Age: -

Region-enriched R5: 2.327/0.03879

 0.958 - - - 0.958 - - Mlig455_066143 {REF} {Length: 2776} {RNA1310_45396} {RNA815_15412}
9. MligTC455_53050 19 0.4 Mlig455_028023

Neo: -

Age: -

 COL6A6 0.958 - - - 0.958 - - Mlig455_028023 {REF} {Length: 1244} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=47.9]} {Human: ENSG00000206384, COL6A6, collagen type VI alpha 6 chain, [Score=60.1, Expect=2e-09]; ENSG00000172752, COL6A5, collagen type VI alpha 5 chain, [Score=58.2, Expect=8e-09]} {Mouse: ENSMUSG00000043719, Col6a6, collagen, type VI, alpha 6, [Score=57.4, Expect=1e-08]} {Dmel: FBgn0259244, CG42342, [Score=47.8, Expect=7e-06]} {Smed: dd_Smed_v6_8075_0_1, dd_Smed_v6_8075_0_1, [Score=62.8, Expect=6e-11]} {RNA1310_72965} {RNA815_62741}
10. MligTC455_38326 37 0.76 Mlig455_038988

Neo: -

Age: -

 TNC 0.955 - - - 0.955 - - Mlig455_038988 {REF} {Length: 1782} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=73.1]} {Human: ENSG00000041982, TNC, tenascin C, [Score=71.2, Expect=1e-13]; ENSG00000116147, TNR, tenascin R, [Score=68.9, Expect=7e-13]} {Mouse: ENSMUSG00000015829, Tnr, tenascin R, [Score=67.0, Expect=3e-12]; ENSMUSG00000028364, Tnc, tenascin C, [Score=65.9, Expect=7e-12]} {Dmel: FBgn0034160, CG5550, [Score=88.2, Expect=7e-21]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=61.2, Expect=7e-11]} {RNA1310_35490} {RNA815_33352}
11. MligTC455_43111 28 0.59 Mlig455_046463

Neo: -

Age: -

 PRR9 0.955 - - - 0.955 - - Mlig455_046463 {REF} {Length: 3065} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=50.4, Expect=3e-07]} {RNA1509_24621} {RNA1310_32442.3} {RNA815_2814.1}
12. MligTC455_26774 54 1.12 Mlig455_038949

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.339

 ANO7 0.953 - - - 0.953 - - Mlig455_038949 {REF} {Length: 4653} {Pfam: Calcium-activated chloride channel [PF04547.14, score=519.7]; Dimerisation domain of Ca+-activated chloride-channel, anoctamin [PF16178.7, score=243.5]} {Human: ENSG00000146205, ANO7, anoctamin 7, [RH, Score=875, Expect=0.0]} {Mouse: ENSMUSG00000034107, Ano7, anoctamin 7, [RH, Score=886, Expect=0.0]} {Dmel: FBgn0038721, subdued, [RH, Score=596, Expect=0.0]} {Celegans: WBGene00010138, anoh-1, Anoctamin, [Score=242, Expect=6e-68]} {Smed: dd_Smed_v6_4761_0_1, dd_Smed_v6_4761_0_1, [RH, Score=1092, Expect=0.0]} {RNA1509_15570} {RNA1310_5583.1} {RNA815_1646.1}
13. MligTC455_36566 40 0.83 Mlig455_053263

Neo: -

Age: -

Region-enriched R2: 4.823/0.01830

 0.953 - - - 0.953 - - Mlig455_053263 {REF} {Length: 1228} {TRANSSPLICED} {RNA1310_99871}
14. MligTC455_48922 264 5.5 Mlig455_043459

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_043459 {REF} {Length: 979} {Pfam: Calcium-activated potassium channel, beta subunit [PF03185.17, score=69.8]} {Smed: dd_Smed_v6_14020_0_1, dd_Smed_v6_14020_0_1, [RH, Score=136, Expect=2e-40]} {RNA1509_45175} {RNA1310_38004.1, RNA1509_45175} {RNA1509_45175, RNA815_18116}
15. MligTC455_12507 28 0.58 Mlig455_038481

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_038481 {REF} {Length: 1649} {RNA1310_25487.1} {RNA815_10689}
16. MligTC455_35003 75 1.57 Mlig455_049853, Mlig455_063819

Neo: -

Age: -

 NOTCH1 0.951 - - - 0.951 - -

Mlig455_049853 {REF} {Length: 882} {Pfam: EGF-like domain [PF00008.29, score=19.8]; EGF-like domain [PF07974.15, score=19.3]} {Human: ENSG00000148400, NOTCH1, notch 1, [Score=50.8, Expect=9e-08]; ENSG00000074181, NOTCH3, notch 3, [Score=49.3, Expect=4e-07]} {Mouse: ENSMUSG00000026923, Notch1, notch 1, [Score=48.5, Expect=5e-07]; ENSMUSG00000038146, Notch3, notch 3, [Score=47.4, Expect=9e-07]; ENSMUSG00000047793, Sned1, sushi, nidogen and EGF-like domains 1, [Score=47.0, Expect=2e-06]} {Dmel: FBgn0259140, CG42255, [Score=45.8, Expect=3e-06]} {Celegans: WBGene00000792, crb-1, Drosophila CRumBs homolog, [Score=48.5, Expect=3e-07]} {Smed: dd_Smed_v6_11876_0_1, dd_Smed_v6_11876_0_1, [Score=43.5, Expect=1e-05]} {RNA1509_48097} {RNA1310_33379} {RNA815_13326.2}

Mlig455_063819 {REF} {Length: 1105} {Pfam: EGF-like domain [PF00008.29, score=21.2]} {Human: ENSG00000148400, NOTCH1, notch 1, [Score=52.0, Expect=1e-07]} {Mouse: ENSMUSG00000055333, Fat2, FAT atypical cadherin 2, [Score=50.4, Expect=3e-07]; ENSMUSG00000026923, Notch1, notch 1, [Score=48.9, Expect=1e-06]; ENSMUSG00000047793, Sned1, sushi, nidogen and EGF-like domains 1, [Score=48.1, Expect=2e-06]} {Dmel: FBgn0259140, CG42255, [Score=53.5, Expect=2e-08]} {Celegans: WBGene00000792, crb-1, Drosophila CRumBs homolog, [Score=50.4, Expect=2e-07]} {RNA1509_48097} {RNA1310_33379} {RNA815_13326.1}
17. MligTC455_26520 70 1.46 Mlig455_069243

Neo: -

Age: logFC(26M/2M)=1.088

 0.95 - - - 0.950 - - Mlig455_069243 {REF} {Length: 1986} {RNA1310_37297} {RNA815_26593}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA