TomoSeq data search

Data search

Results for MligTC455_14042

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_14042	9	0.18	Mlig455_006197	Neo: - Age: -	RTL1	Mlig455_006197 {REF} {Length: 3232} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=106.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=102.3]; Integrase zinc binding domain [PF17921.3, score=66.3]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=54.9]; Integrase core domain [PF00665.28, score=44.9]; PT repeat [PF04886.14, score=33.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=73.2, Expect=2e-12]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=71.6, Expect=3e-12]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=71.6, Expect=3e-12]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=241, Expect=5e-67]} {RNA1509_38544} {RNA1310_2645.1} {RNA815_16906}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_14042

0.18

Mlig455_006197

Neo: -

Age: -

RTL1

Mlig455_006197 {REF} {Length: 3232} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=106.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=102.3]; Integrase zinc binding domain [PF17921.3, score=66.3]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=54.9]; Integrase core domain [PF00665.28, score=44.9]; PT repeat [PF04886.14, score=33.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=73.2, Expect=2e-12]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=71.6, Expect=3e-12]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=71.6, Expect=3e-12]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=241, Expect=5e-67]} {RNA1509_38544} {RNA1310_2645.1} {RNA815_16906}

Cumulative graph for MligTC455_14042

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-	-	-	-
RegionR2	-	-	-	-
RegionR3	-	-	-	-
RegionR4	-	-	-	-
RegionR5	-	-	-	-
RegionR6	-	-	-	-
RegionR7	-	-	-	-
RegionR8	-	-	-	-

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-	-	-	-
RegenerationR2	-	-	-	-
RegenerationR3	-	-	-	-
RegenerationR4	-	-	-	-
RegenerationR5	-	-	-	-
RegenerationR6	-	-	-	-
RegenerationBL	-	-	-	-
RegenerationTP	-	-	-	-

Genes with expression patterns similar to MligTC455_14042

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_14042	9	0.18	Mlig455_006197	Neo: - Age: -	RTL1	1	-	-	-	-	1.000	-	Mlig455_006197 {REF} {Length: 3232} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=106.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=102.3]; Integrase zinc binding domain [PF17921.3, score=66.3]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=54.9]; Integrase core domain [PF00665.28, score=44.9]; PT repeat [PF04886.14, score=33.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=73.2, Expect=2e-12]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=71.6, Expect=3e-12]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=71.6, Expect=3e-12]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=241, Expect=5e-67]} {RNA1509_38544} {RNA1310_2645.1} {RNA815_16906}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts