M. lignano Tomo-Seq
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Results for MligTC455_14280

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_14280 35 0.73 Mlig455_016957, Mlig455_059580

Neo: -

Age: -

Mlig455_016957 {REF} {Length: 560} {Pfam: RNase H [PF00075.26, score=26.3]} {RNA1509_47541} {RNA1310_7266.1} {RNA815_36641}

Mlig455_059580 {REF} {Length: 560} {Pfam: RNase H [PF00075.26, score=26.3]} {RNA1509_47541} {RNA1310_7266.1} {RNA815_36641}

Cumulative graph for MligTC455_14280

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.877 1.106 0.99979 1.00000
RegionR2 0.386 1.106 0.44263 0.83175
RegionR3 -1.024 1.106 0.99978 1.00000
RegionR4 1.683 1.106 0.99972 1.00000
RegionR5 1.01 1.106 0.39951 0.75645
RegionR6 1.024 1.106 0.32199 0.91126
RegionR7 -1.242 1.106 0.99983 1.00000
RegionR8 -0.96 1.106 0.99981 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.069 1.106 1.00000 1.00000
RegenerationR2 0.936 1.106 0.39928 0.81431
RegenerationR3 3.601 1.106 0.04303 0.36287
RegenerationR4 1.522 1.106 0.17217 0.60944
RegenerationR5 2.119 1.106 0.13914 0.55104
RegenerationR6 0.862 1.106 0.65394 0.90012
RegenerationBL 3.17 1.106 0.14580 0.45585
RegenerationTP 3.472 1.106 0.23094 0.67588


Genes with expression patterns similar to MligTC455_14280

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_14280 35 0.73 Mlig455_016957, Mlig455_059580

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000

Mlig455_016957 {REF} {Length: 560} {Pfam: RNase H [PF00075.26, score=26.3]} {RNA1509_47541} {RNA1310_7266.1} {RNA815_36641}

Mlig455_059580 {REF} {Length: 560} {Pfam: RNase H [PF00075.26, score=26.3]} {RNA1509_47541} {RNA1310_7266.1} {RNA815_36641}
2. MligTC455_14291 23 0.48 Mlig455_017053

Neo: -

Age: -

 0.999 - - - 0.999 - - Mlig455_017053 {REF} {Length: 5417} {RNA1509_47541} {RNA1310_7266.1} {RNA815_36641}
3. MligTC455_32941 211 4.39 Mlig455_059841

Neo: -

Age: Up-Down-Down

 GRIK2 0.952 - - - - 0.952 - Mlig455_059841 {REF} {Length: 5097} {Pfam: Ligand-gated ion channel [PF00060.28, score=186.4]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=131.9]; Receptor family ligand binding region [PF01094.30, score=83.3]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=67.8]; Periplasmic binding protein [PF13458.8, score=21.4]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [RH, Score=640, Expect=0.0]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [RH, Score=629, Expect=0.0]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [RH, Score=629, Expect=0.0]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [RH, Score=639, Expect=0.0]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [RH, Score=628, Expect=0.0]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [RH, Score=623, Expect=0.0]} {Dmel: FBgn0038837, CG3822, [RH, Score=624, Expect=0.0]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [RH, Score=464, Expect=7e-149]} {Smed: dd_Smed_v6_8816_0_1, dd_Smed_v6_8816_0_1, [RH, Score=702, Expect=0.0]} {RNA1509_25923} {RNA1310_4023.1, RNA1509_25923} {RNA1509_25923, RNA815_3049.1}
4. MligTC455_51084 260 5.42 Mlig455_023014, Mlig455_023114

Neo: -

Age: -

 PDLIM7 0.952 - - - - - 0.952

Mlig455_023014 {REF} {Length: 3783} {Pfam: LIM domain [PF00412.24, score=118.6]; PDZ domain [PF00595.26, score=58.1]; PDZ domain [PF17820.3, score=29.0]} {Human: ENSG00000196923, PDLIM7, PDZ and LIM domain 7, [RH, Score=214, Expect=2e-64]} {Mouse: ENSMUSG00000021493, Pdlim7, PDZ and LIM domain 7, [Score=215, Expect=1e-64]} {Dmel: FBgn0265991, Zasp52, Z band alternatively spliced PDZ-motif protein 52, [RH, Score=176, Expect=1e-47]} {Celegans: WBGene00001132, alp-1, ALP/Enigma encoding, [RH, Score=178, Expect=2e-48]} {Smed: dd_Smed_v6_10318_0_1, dd_Smed_v6_10318_0_1, [RH, Score=174, Expect=1e-50]} {RNA1509_38999} {RNA1310_10648} {RNA815_14909}

Mlig455_023114 {REF} {Length: 3922} {Pfam: LIM domain [PF00412.24, score=118.6]; PDZ domain [PF00595.26, score=58.1]; PDZ domain [PF17820.3, score=29.0]} {Human: ENSG00000196923, PDLIM7, PDZ and LIM domain 7, [RH, Score=214, Expect=2e-64]} {Mouse: ENSMUSG00000021493, Pdlim7, PDZ and LIM domain 7, [Score=215, Expect=1e-64]} {Dmel: FBgn0265991, Zasp52, Z band alternatively spliced PDZ-motif protein 52, [RH, Score=176, Expect=1e-47]} {Celegans: WBGene00001132, alp-1, ALP/Enigma encoding, [RH, Score=178, Expect=2e-48]} {Smed: dd_Smed_v6_10318_0_1, dd_Smed_v6_10318_0_1, [RH, Score=174, Expect=1e-50]} {RNA1509_38999, RNA1509_53715} {RNA1310_10648, RNA1509_38999, RNA1509_53715} {RNA1509_38999, RNA1509_53715, RNA815_14909}

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