M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_14422

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_14422 87 1.81 Mlig455_004344, Mlig455_048726

Neo: -

Age: -

Mlig455_004344 {REF} {Length: 233} {NoTransDecoderORF} {RNA1310_92623}

Mlig455_048726 {REF} {Length: 1195} {RNA1310_121910.1} {RNA815_52402}

Cumulative graph for MligTC455_14422

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.202 1.79 1.00000 1.00000
RegionR2 -2.586 1.79 0.99418 1.00000
RegionR3 0.571 1.79 0.80624 1.00000
RegionR4 6.14 1.79 0.04306 0.17425
RegionR5 0.634 1.79 0.55388 0.91453
RegionR6 -0.045 1.79 0.75572 1.00000
RegionR7 -2.727 1.79 0.99993 1.00000
RegionR8 -1.785 1.79 0.99980 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.798 1.79 0.66558 1.00000
RegenerationR2 2.069 1.79 0.38260 0.80309
RegenerationR3 -0.746 1.79 0.75814 0.96707
RegenerationR4 -1.652 1.79 0.61646 0.91962
RegenerationR5 0.363 1.79 0.94323 1.00000
RegenerationR6 1.053 1.79 0.66312 0.90505
RegenerationBL 2.106 1.79 0.48191 0.84692
RegenerationTP 2.693 1.79 0.58435 0.95234


Genes with expression patterns similar to MligTC455_14422

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_14422 87 1.81 Mlig455_004344, Mlig455_048726

Neo: -

Age: -

 3 - - 1.000 - 1.000 1.000

Mlig455_004344 {REF} {Length: 233} {NoTransDecoderORF} {RNA1310_92623}

Mlig455_048726 {REF} {Length: 1195} {RNA1310_121910.1} {RNA815_52402}
2. MligTC455_48595 503 10.48 Mlig455_017699

Neo: -

Age: -

Region-enriched R6: 1.813/0.03812

Regeneration-downregulated R6: -2.325

Regeneration-depleted R6: -2.325

 0.96 - - - - - 0.960 Mlig455_017699 {REF} {Length: 1875} {NoTransDecoderORF} {RNA1509_38710} {RNA1310_37566} {RNA815_20664}
3. MligTC455_49007 27 0.57 Mlig455_041690

Neo: -

Age: -

 0.956 - - - - - 0.956 Mlig455_041690 {REF} {Length: 803} {NoTransDecoderORF} {RNA1509_46943} {RNA1310_69788} {RNA815_38067}
4. MligTC455_43994 920 19.17 Mlig455_010033, Mlig455_054067, Mlig455_063286

Neo: -

Age: -

 0.953 - - - - - 0.953

Mlig455_010033 {REF} {Length: 2101} {Pfam: Multi-glycosylated core protein 24 (MGC-24), sialomucin [PF05283.13, score=29.2]} {RNA1509_39774} {RNA1310_51834.1} {RNA815_27249}

Mlig455_054067 {REF} {Length: 2101} {Celegans: WBGene00021290, clec-122, C-type LECtin, [RH, Score=94.4, Expect=7e-21]} {RNA1509_39774} {RNA1310_51834.1} {RNA815_31353}

Mlig455_063286 {REF} {Length: 2023} {Pfam: Multi-glycosylated core protein 24 (MGC-24), sialomucin [PF05283.13, score=24.8]; Protein of unknown function (DUF1118) [PF06549.14, score=19.5]} {RNA1509_32845} {RNA1310_51834.1} {RNA815_27249}
5. MligTC455_03020 77 1.61 Mlig455_031009

Neo: -

Age: -

 PCDH7 0.952 - - - - - 0.952 Mlig455_031009 {REF} {Length: 4201} {Pfam: Cadherin domain [PF00028.19, score=251.4]} {Human: ENSG00000169851, PCDH7, protocadherin 7, [Score=236, Expect=2e-63]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=263, Expect=2e-72]} {Dmel: FBgn0284247, ds, dachsous, [Score=207, Expect=1e-53]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=172, Expect=3e-43]} {Smed: dd_Smed_v6_17019_0_1, dd_Smed_v6_17019_0_1, [Score=290, Expect=8e-83]} {RNA1509_5672} {RNA1310_47266} {RNA815_2173}
6. MligTC455_39394 2368 49.33 Mlig455_041723, Mlig455_041724, Mlig455_061413

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.728

Region-enriched R7: 2.572/0.04354

 RNF138 0.951 - - - - - 0.951

Mlig455_041723 {REF} {Length: 1602} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=34.8]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.8]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.0]; Ring finger domain [PF13639.8, score=22.3]; zinc-RING finger domain [PF14634.8, score=21.8]; RING-H2 zinc finger domain [PF12678.9, score=20.7]} {Human: ENSG00000134758, RNF138, ring finger protein 138, [RH, Score=44.7, Expect=1e-05]} {Mouse: ENSMUSG00000032850, Rnft2, ring finger protein, transmembrane 2, [Score=47.0, Expect=5e-06]; ENSMUSG00000020521, Rnft1, ring finger protein, transmembrane 1, [Score=45.8, Expect=1e-05]} {Dmel: FBgn0265257, CG44271, [Score=45.8, Expect=2e-06]} {RNA1509_21994, RNA1509_25107} {RNA1310_38668, RNA1509_21994, RNA1509_25107} {RNA1509_21994, RNA1509_25107, RNA815_20898.1}

Mlig455_041724 {REF} {Length: 1316} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=34.8]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.8]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.0]; Ring finger domain [PF13639.8, score=22.3]; zinc-RING finger domain [PF14634.8, score=21.8]; RING-H2 zinc finger domain [PF12678.9, score=20.7]} {Human: ENSG00000134758, RNF138, ring finger protein 138, [RH, Score=44.7, Expect=1e-05]} {Mouse: ENSMUSG00000032850, Rnft2, ring finger protein, transmembrane 2, [Score=47.4, Expect=5e-06]; ENSMUSG00000020521, Rnft1, ring finger protein, transmembrane 1, [Score=45.8, Expect=1e-05]} {Dmel: FBgn0265257, CG44271, [RH, Score=45.8, Expect=2e-06]} {RNA1509_25107, RNA1509_58798} {RNA1310_38668, RNA1509_58798} {RNA1509_58798, RNA815_20898.1}

Mlig455_061413 {REF} {Length: 1228} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=34.7]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=24.4]; Ring finger domain [PF13639.8, score=22.5]; zinc-RING finger domain [PF14634.8, score=22.2]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.7]; RING-H2 zinc finger domain [PF12678.9, score=20.8]} {Human: ENSG00000134758, RNF138, ring finger protein 138, [RH, Score=46.6, Expect=8e-06]} {Dmel: FBgn0265257, CG44271, [RH, Score=47.8, Expect=3e-07]} {RNA1509_25107} {RNA1310_38668} {RNA815_20898.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA