M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_14502

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_14502 32 0.67 Mlig455_047308

Neo: -

Age: -

 Mlig455_047308 {REF} {Length: 1018} {TRANSSPLICED} {RNA1509_56030} {RNA1310_23619} {RNA815_11671}

Cumulative graph for MligTC455_14502

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 3.731 0.951 0.32790 0.97528
RegionR2 -0.907 0.951 0.99034 1.00000
RegionR3 -2.681 0.951 1.00000 1.00000
RegionR4 2.933 0.951 0.05697 0.21062
RegionR5 1.969 0.951 0.02860 0.12540
RegionR6 -0.743 0.951 0.97386 1.00000
RegionR7 0.064 0.951 0.88276 1.00000
RegionR8 -4.366 0.951 0.19820 0.79510

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.692 0.951 0.50910 1.00000
RegenerationR2 -3.593 0.951 0.00866 0.14841
RegenerationR3 0.082 0.951 0.94927 1.00000
RegenerationR4 -3.153 0.951 0.01929 0.21802
RegenerationR5 -1.945 0.951 0.03220 0.29961
RegenerationR6 -3.072 0.951 0.07783 0.34859
RegenerationBL 2.032 0.951 0.32046 0.68756
RegenerationTP 1.402 0.951 0.57597 0.94717


Genes with expression patterns similar to MligTC455_14502

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_14502 32 0.67 Mlig455_047308

Neo: -

Age: -

 2 1.000 - - - - 1.000 Mlig455_047308 {REF} {Length: 1018} {TRANSSPLICED} {RNA1509_56030} {RNA1310_23619} {RNA815_11671}
2. MligTC455_29737 119 2.48 Mlig455_049700, Mlig455_049706, Mlig455_070465

Neo: -

Age: -

Region-enriched R4: 5.563/0.03218

 0.983 - - - - - 0.983

Mlig455_049700 {REF} {Length: 1135} {NoTransDecoderORF} {RNA1509_57671} {RNA1310_18142} {RNA815_55954}

Mlig455_049706 {REF} {Length: 1000} {NoTransDecoderORF} {RNA1509_34937} {RNA1310_18142} {RNA815_55954}

Mlig455_070465 {REF} {Length: 884} {NoTransDecoderORF} {RNA1509_34937} {RNA1310_18142} {RNA815_55954}
3. MligTC455_26645 132 2.74 Mlig455_032393, Mlig455_032437

Neo: -

Age: -

 B4GALT1 0.979 - - - - - 0.979

Mlig455_032393 {REF} {Length: 2140} {Pfam: N-terminal region of glycosyl transferase group 7 [PF13733.8, score=128.2]; N-terminal domain of galactosyltransferase [PF02709.16, score=66.3]} {Human: ENSG00000086062, B4GALT1, beta-1,4-galactosyltransferase 1, [Score=178, Expect=1e-51]} {Mouse: ENSMUSG00000028413, B4galt1, UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, [Score=174, Expect=4e-50]} {Dmel: FBgn0027538, beta4GalNAcTA, [Score=149, Expect=6e-41]} {Celegans: WBGene00000269, bre-4, Beta-1,4-N-acetylgalactosaminyltransferase bre-4, [Score=166, Expect=2e-47]} {Smed: dd_Smed_v6_12436_0_1, dd_Smed_v6_12436_0_1, [Score=174, Expect=7e-51]} {RNA1310_17913} {RNA815_20156}

Mlig455_032437 {REF} {Length: 2249} {Pfam: N-terminal region of glycosyl transferase group 7 [PF13733.8, score=126.3]; N-terminal domain of galactosyltransferase [PF02709.16, score=66.3]} {Human: ENSG00000086062, B4GALT1, beta-1,4-galactosyltransferase 1, [Score=181, Expect=9e-53]} {Mouse: ENSMUSG00000028413, B4galt1, UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, [Score=176, Expect=5e-51]} {Dmel: FBgn0027538, beta4GalNAcTA, [Score=149, Expect=6e-41]} {Celegans: WBGene00000269, bre-4, Beta-1,4-N-acetylgalactosaminyltransferase bre-4, [Score=166, Expect=2e-47]} {Smed: dd_Smed_v6_12436_0_1, dd_Smed_v6_12436_0_1, [Score=172, Expect=3e-50]} {RNA1310_17913} {RNA815_20156}
4. MligTC455_53118 133 2.76 Mlig455_029477

Neo: -

Age: -

 CHRNA2 0.979 - - - - - 0.979 Mlig455_029477 {REF} {Length: 3006} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=160.4]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=103.2]} {Human: ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=212, Expect=1e-60]; ENSG00000101204, CHRNA4, cholinergic receptor nicotinic alpha 4 subunit, [Score=210, Expect=4e-59]} {Mouse: ENSMUSG00000027577, Chrna4, cholinergic receptor, nicotinic, alpha polypeptide 4, [Score=209, Expect=3e-59]; ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=207, Expect=2e-59]; ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=204, Expect=1e-58]; ENSMUSG00000022041, Chrna2, cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal), [Score=204, Expect=4e-58]} {Dmel: FBgn0028875, nAChRalpha5, nicotinic Acetylcholine Receptor alpha5, [Score=208, Expect=1e-57]} {Celegans: WBGene00043066, acr-25, AcetylCholine Receptor, [Score=202, Expect=2e-57]} {Smed: dd_Smed_v6_10322_0_1, dd_Smed_v6_10322_0_1, [RH, Score=437, Expect=6e-147]} {RNA1509_18288} {RNA1310_21192} {RNA815_24334}
5. MligTC455_34192 134 2.8 Mlig455_022589

Neo: -

Age: -

 0.973 - - - - - 0.973 Mlig455_022589 {REF} {Length: 1896} {RNA1509_34101} {RNA1310_46799} {RNA815_22648}
6. MligTC455_16032 77 1.61 Mlig455_037337

Neo: Irradiation

Age: Down-Down-Down, logFC(26M/2M)=-0.885

 0.971 - - - - - 0.971 Mlig455_037337 {REF} {Length: 3079} {Pfam: Neuralized [PF07177.14, score=30.4]} {RNA1310_49372}
7. MligTC455_09301 26 0.55 Mlig455_011440

Neo: -

Age: -

Regeneration-upregulated BL: 7.313

Regeneration-enriched BL: 7.313

 0.968 - - - - - 0.968 Mlig455_011440 {REF} {Length: 331} {NoTransDecoderORF} {RNA1509_58496} {RNA1310_68696} {RNA815_38510}
8. MligTC455_29736 43 0.89 Mlig455_026211

Neo: -

Age: -

 SAXO1 0.965 - - - - - 0.965 Mlig455_026211 {REF} {Length: 2732} {Pfam: STOP protein [PF05217.14, score=21.0]} {Human: ENSG00000155875, SAXO1, stabilizer of axonemal microtubules 1, [Score=197, Expect=6e-57]} {Mouse: ENSMUSG00000038570, Saxo2, stabilizer of axonemal microtubules 2, [RH, Score=179, Expect=5e-51]} {Celegans: WBGene00011630, T08G11.3, [Score=88.2, Expect=2e-18]} {Smed: dd_Smed_v6_3695_0_1, dd_Smed_v6_3695_0_1, [Score=420, Expect=1e-143]} {RNA1509_36171} {RNA1310_10851.2, RNA1509_36171} {RNA1509_36171, RNA815_5931.1}
9. MligTC455_08889 26 0.54 Mlig455_054256

Neo: -

Age: -

 0.964 - - - - - 0.964 Mlig455_054256 {REF} {Length: 1360} {NoTransDecoderORF} {RNA1509_50721} {RNA1310_33163} {RNA815_21535}
10. MligTC455_26163 79 1.65 Mlig455_012294, Mlig455_012299

Neo: -

Age: Down-Up-Down

 0.962 - - - - - 0.962

Mlig455_012294 {REF} {Length: 653} {NoTransDecoderORF} {RNA1509_8784} {RNA1310_47579} {RNA815_29176.2}

Mlig455_012299 {REF} {Length: 416} {NoTransDecoderORF} {RNA1509_8784} {RNA1310_47579} {RNA815_29176.2}
11. MligTC455_19130 1367 28.48 Mlig455_026706

Neo: -

Age: Down-Up-Down

Regeneration-upregulated BL: 2.447

Regeneration-enriched BL: 2.447

 METTL27 0.96 - - - - - 0.960 Mlig455_026706 {REF} {Length: 1369} {Pfam: Methyltransferase domain [PF13649.8, score=31.4]} {Human: ENSG00000165171, METTL27, methyltransferase like 27, [Score=85.5, Expect=1e-19]} {Mouse: ENSMUSG00000040557, Mettl27, methyltransferase like 27, [Score=85.1, Expect=1e-19]} {Smed: dd_Smed_v6_5408_0_1, dd_Smed_v6_5408_0_1, [RH, Score=154, Expect=6e-47]} {RNA1509_29375} {RNA1310_31403.1, RNA1509_29375} {RNA1509_29375, RNA815_12596}
12. MligTC455_28655 49 1.03 Mlig455_048319

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.727

 RNF213 0.96 - - - - - 0.960 Mlig455_048319 {REF} {Length: 12875} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=25.3]; AAA domain (dynein-related subfamily) [PF07728.16, score=23.1]} {Human: ENSG00000173821, RNF213, ring finger protein 213, [Score=329, Expect=5e-89]} {Mouse: ENSMUSG00000070327, Rnf213, ring finger protein 213, [Score=319, Expect=3e-86]} {RNA1509_30363} {RNA1310_550} {RNA815_15}
13. MligTC455_36631 85 1.78 Mlig455_045136, Mlig455_045171

Neo: -

Age: -

 0.954 - - - - - 0.954

Mlig455_045136 {REF} {Length: 1192} {NoTransDecoderORF} {RNA1509_57421} {RNA1310_19938.1} {RNA815_11593}

Mlig455_045171 {REF} {Length: 2421} {RNA1509_57421} {RNA1310_19938.1} {RNA815_11593}
14. MligTC455_11926 101 2.11 Mlig455_021319

Neo: -

Age: -

Region-enriched R7: 4.905/0.00107

 0.953 - - - - - 0.953 Mlig455_021319 {REF} {Length: 2758} {Pfam: Mab-21 protein [PF03281.16, score=23.9]} {RNA1509_41055} {RNA1310_11481.1} {RNA815_44675}
15. MligTC455_26006 278 5.8 Mlig455_028111

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_028111 {REF} {Length: 2039} {RNA1509_21210, RNA1509_25057, RNA1509_37447, RNA1509_40812} {RNA1310_16827, RNA1509_21210, RNA1509_25057, RNA1509_37447, RNA1509_40812} {RNA1509_21210, RNA1509_25057, RNA1509_37447, RNA1509_40812, RNA815_5895}
16. MligTC455_28617 96 2 Mlig455_023492, Mlig455_049195

Neo: -

Age: -

 RPIA 0.951 - - - - - 0.951

Mlig455_023492 {REF} {Length: 6153} {Celegans: WBGene00021290, clec-122, C-type LECtin, [Score=50.8, Expect=6e-08]} {RNA1509_39265} {RNA1310_73176} {RNA815_35614}

Mlig455_049195 {REF} {Length: 2649} {Pfam: Ribose 5-phosphate isomerase A (phosphoriboisomerase A) [PF06026.16, score=60.7]} {Human: ENSG00000153574, RPIA, ribose 5-phosphate isomerase A, [Score=82.0, Expect=4e-20]} {Mouse: ENSMUSG00000053604, Rpia, ribose 5-phosphate isomerase A, [Score=79.3, Expect=3e-19]} {Dmel: FBgn0050410, Rpi, Ribose-5-phosphate isomerase, [Score=73.6, Expect=1e-17]} {Celegans: WBGene00015101, rpia-1, Probable-ribose 5-phosphate isomerase, [Score=67.0, Expect=3e-15]} {Smed: dd_Smed_v6_12956_0_2, dd_Smed_v6_12956_0_2, [Score=82.8, Expect=2e-21]} {RNA1509_39265} {RNA1310_63659} {RNA815_35614}
17. MligTC455_28130 73 1.52 Mlig455_017884

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_017884 {REF} {Length: 3157} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}
18. MligTC455_31201 73 1.53 Mlig455_045851, Mlig455_045867

Neo: -

Age: Up-Down-Up

 LRRC9 0.95 - - - - - 0.950

Mlig455_045851 {REF} {Length: 5484} {TRANSSPLICED} {Pfam: Leucine-rich repeat [PF14580.8, score=159.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=149.6]; Leucine rich repeat [PF13855.8, score=111.6]} {Human: ENSG00000131951, LRRC9, leucine rich repeat containing 9, [RH, Score=437, Expect=1e-129]} {Mouse: ENSMUSG00000021090, Lrrc9, leucine rich repeat containing 9, [RH, Score=639, Expect=0.0]} {Dmel: FBgn0039728, CG7896, [Score=73.6, Expect=1e-12]} {Celegans: WBGene00020266, T05H4.3, [RH, Score=80.1, Expect=7e-15]} {Smed: dd_Smed_v6_14851_0_1, dd_Smed_v6_14851_0_1, [RH, Score=368, Expect=4e-108]} {RNA1509_22179} {RNA1310_1731, RNA1509_22179} {RNA1509_22179, RNA815_589.1}

Mlig455_045867 {REF} {Length: 5480} {TRANSSPLICED} {Pfam: Leucine-rich repeat [PF14580.8, score=159.3]; Leucine Rich repeats (2 copies) [PF12799.9, score=149.0]; Leucine rich repeat [PF13855.8, score=111.3]} {Human: ENSG00000131951, LRRC9, leucine rich repeat containing 9, [RH, Score=436, Expect=2e-129]} {Mouse: ENSMUSG00000021090, Lrrc9, leucine rich repeat containing 9, [RH, Score=639, Expect=0.0]} {Dmel: FBgn0039728, CG7896, [Score=74.7, Expect=6e-13]} {Celegans: WBGene00020266, T05H4.3, [RH, Score=80.1, Expect=8e-15]} {Smed: dd_Smed_v6_14851_0_1, dd_Smed_v6_14851_0_1, [RH, Score=369, Expect=2e-108]} {RNA1509_22179} {RNA1310_1731} {RNA815_589.1}
19. MligTC455_42723 666 13.88 Mlig455_069654

Neo: Irradiation

Age: -

Region-enriched R7: 2.955/0.00360

Regeneration-upregulated BL: 3.069

Regeneration-enriched BL: 3.069

 0.95 - - - - - 0.950 Mlig455_069654 {REF} {Length: 1471} {RNA1310_30663.1} {RNA815_50207}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA