M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_14566

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_14566 122 2.54 Mlig455_063908

Neo: -

Age: -

 Mlig455_063908 {REF} {Length: 2743} {TRANSSPLICED} {RNA1509_11357} {RNA1310_10080.1} {RNA815_13917}

Cumulative graph for MligTC455_14566

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.738 2.019 0.33346 0.97983
RegionR2 0.215 2.019 0.78117 1.00000
RegionR3 0.142 2.019 0.81035 1.00000
RegionR4 0.963 2.019 0.37279 0.69625
RegionR5 0.442 2.019 0.65373 1.00000
RegionR6 -0.319 2.019 0.93835 1.00000
RegionR7 2.2 2.019 0.03089 0.33445
RegionR8 1.095 2.019 0.46087 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.253 2.019 0.99999 1.00000
RegenerationR2 1.021 2.019 0.09043 0.48102
RegenerationR3 1.125 2.019 0.14245 0.56907
RegenerationR4 0.634 2.019 0.39388 0.80973
RegenerationR5 1.151 2.019 0.07764 0.43500
RegenerationR6 1.523 2.019 0.08721 0.36911
RegenerationBL 0.379 2.019 0.67358 1.00000
RegenerationTP -0.286 2.019 0.77077 1.00000


Genes with expression patterns similar to MligTC455_14566

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_14566 122 2.54 Mlig455_063908

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_063908 {REF} {Length: 2743} {TRANSSPLICED} {RNA1509_11357} {RNA1310_10080.1} {RNA815_13917}
2. MligTC455_29503 492 10.25 Mlig455_059808

Neo: -

Age: -

 SZT2 1.67 - - - - 0.950 0.720 Mlig455_059808 {REF} {Length: 13680} {TRANSSPLICED} {Human: ENSG00000198198, SZT2, SZT2, KICSTOR complex subunit, [RH, Score=325, Expect=9e-88]} {Mouse: ENSMUSG00000033253, Szt2, seizure threshold 2, [RH, Score=330, Expect=1e-89]} {Celegans: WBGene00010013, F54B3.1, [RH, Score=112, Expect=7e-24]} {Smed: dd_Smed_v6_8946_0_1, dd_Smed_v6_8946_0_1, [Score=111, Expect=1e-23]} {RNA1509_25909, RNA1509_3648} {RNA1310_92.1, RNA1509_25909, RNA1509_3648} {RNA1509_25909, RNA1509_3648, RNA815_12089}
3. MligTC455_43431 1980 41.26 Mlig455_015898

Neo: -

Age: -

Region-enriched R4: 1.385/0.00468

 POR 0.985 - - - - 0.985 - Mlig455_015898 {REF} {Length: 3475} {TRANSSPLICED} {Pfam: FAD binding domain [PF00667.22, score=240.7]; Flavodoxin [PF00258.27, score=118.5]; Oxidoreductase NAD-binding domain [PF00175.23, score=61.6]} {Human: ENSG00000127948, POR, cytochrome p450 oxidoreductase, [RH, Score=773, Expect=0.0]} {Mouse: ENSMUSG00000005514, Por, P450 (cytochrome) oxidoreductase, [RH, Score=769, Expect=0.0]} {Dmel: FBgn0015623, Cpr, Cytochrome P450 reductase, [RH, Score=759, Expect=0.0]} {Celegans: WBGene00001262, emb-8, NADPH--cytochrome P450 reductase, [RH, Score=621, Expect=0.0]} {Smed: dd_Smed_v6_542_0_1, dd_Smed_v6_542_0_1, [RH, Score=746, Expect=0.0]} {RNA1509_14612, RNA1509_23595} {RNA1310_1356.1, RNA1509_23595} {RNA1509_23595, RNA815_803.1}
4. MligTC455_17647 1349 28.11 Mlig455_035989

Neo: -

Age: -

 PPP3CA 0.974 - - - - 0.974 - Mlig455_035989 {REF} {Length: 4819} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=129.1]} {Human: ENSG00000138814, PPP3CA, protein phosphatase 3 catalytic subunit alpha, [RH, Score=825, Expect=0.0]; ENSG00000107758, PPP3CB, protein phosphatase 3 catalytic subunit beta, [RH, Score=810, Expect=0.0]; ENSG00000120910, PPP3CC, protein phosphatase 3 catalytic subunit gamma, [RH, Score=803, Expect=0.0]} {Mouse: ENSMUSG00000028161, Ppp3ca, protein phosphatase 3, catalytic subunit, alpha isoform, [RH, Score=823, Expect=0.0]; ENSMUSG00000021816, Ppp3cb, protein phosphatase 3, catalytic subunit, beta isoform, [RH, Score=811, Expect=0.0]; ENSMUSG00000022092, Ppp3cc, protein phosphatase 3, catalytic subunit, gamma isoform, [RH, Score=789, Expect=0.0]} {Dmel: FBgn0011826, Pp2B-14D, Protein phosphatase 2B at 14D, [RH, Score=821, Expect=0.0]} {Celegans: WBGene00006527, tax-6, Serine/threonine-protein phosphatase 2B catalytic subunit, [RH, Score=760, Expect=0.0]} {Smed: dd_Smed_v6_2045_0_1, dd_Smed_v6_2045_0_1, [RH, Score=670, Expect=0.0]} {RNA1509_3236} {RNA1310_3919.1} {RNA815_3119.1}
5. MligTC455_46788 260 5.41 Mlig455_063761

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.663

 0.967 - - 0.967 - - - Mlig455_063761 {REF} {Length: 329} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_38481} {RNA1310_68166.1, RNA1509_38481} {RNA1509_38481, RNA815_35753}
6. MligTC455_27362 102 2.13 Mlig455_014697, Mlig455_014740

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.978

Region-enriched R7: 4.693/0.00015

 ANGPTL2 0.959 - - 0.959 - - -

Mlig455_014697 {REF} {Length: 1087} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=78.6]} {Human: ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=77.4, Expect=5e-15]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=77.4, Expect=5e-15]; ENSG00000120332, TNN, tenascin N, [Score=73.9, Expect=1e-13]} {Mouse: ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=77.8, Expect=2e-15]} {Dmel: FBgn0051832, CG31832, [Score=73.2, Expect=9e-15]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=53.9, Expect=8e-08]} {RNA1509_21789} {RNA1310_30528} {RNA815_9549.3}

Mlig455_014740 {REF} {Length: 1120} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=78.6]} {Human: ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=77.4, Expect=5e-15]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=77.4, Expect=5e-15]; ENSG00000120332, TNN, tenascin N, [Score=73.9, Expect=1e-13]} {Mouse: ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=77.8, Expect=2e-15]} {Dmel: FBgn0051832, CG31832, [Score=73.2, Expect=9e-15]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=53.9, Expect=8e-08]} {RNA1509_21789} {RNA1310_30528} {RNA815_9549.3}
7. MligTC455_23481 281 5.85 Mlig455_008434, Mlig455_071066

Neo: Irradiation

Age: -

 0.95 - - 0.950 - - -

Mlig455_008434 {REF} {Length: 2482} {TRANSSPLICED} {RNA1509_25161} {RNA1310_13086.3} {RNA815_8320}

Mlig455_071066 {REF} {Length: 2287} {TRANSSPLICED} {RNA1509_25161} {RNA1310_13086.3} {RNA815_8320}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA