M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_14577

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_14577 51 1.06 Mlig455_024026, Mlig455_024091

Neo: -

Age: logFC(26M/2M)=-0.714

Mlig455_024026 {REF} {Length: 243} {NoTransDecoderORF} {RNA1310_72624}

Mlig455_024091 {REF} {Length: 2685} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=137.7]} {Smed: dd_Smed_v6_19599_0_1, dd_Smed_v6_19599_0_1, [Score=64.7, Expect=1e-10]} {RNA1310_28762} {RNA815_42177}

Cumulative graph for MligTC455_14577

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.686 1.321 0.99995 1.00000
RegionR2 1.215 1.321 0.41565 0.80862
RegionR3 3.054 1.321 0.09054 0.53138
RegionR4 -0.276 1.321 1.00000 1.00000
RegionR5 -0.996 1.321 0.99991 1.00000
RegionR6 1.664 1.321 0.23580 0.81949
RegionR7 1.281 1.321 0.35322 0.98931
RegionR8 -2.256 1.321 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.118 1.321 0.99990 1.00000
RegenerationR2 -0.136 1.321 0.83818 1.00000
RegenerationR3 -0.273 1.321 0.80088 0.98293
RegenerationR4 0.415 1.321 0.41532 0.82352
RegenerationR5 2.281 1.321 0.24538 0.67859
RegenerationR6 -2.574 1.321 0.32908 0.67539
RegenerationBL -3.36 1.321 0.99995 1.00000
RegenerationTP 0.476 1.321 0.79632 1.00000


Genes with expression patterns similar to MligTC455_14577

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_14577 51 1.06 Mlig455_024026, Mlig455_024091

Neo: -

Age: logFC(26M/2M)=-0.714

 4 - 1.000 1.000 1.000 1.000 -

Mlig455_024026 {REF} {Length: 243} {NoTransDecoderORF} {RNA1310_72624}

Mlig455_024091 {REF} {Length: 2685} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=137.7]} {Smed: dd_Smed_v6_19599_0_1, dd_Smed_v6_19599_0_1, [Score=64.7, Expect=1e-10]} {RNA1310_28762} {RNA815_42177}
2. MligTC455_16667 20 0.42 Mlig455_040694, Mlig455_064563

Neo: -

Age: -

 1.822 - - 0.859 0.963 - -

Mlig455_040694 {REF} {Length: 1748} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=18.9]} {Smed: dd_Smed_v6_29877_0_1, dd_Smed_v6_29877_0_1, [Score=79.3, Expect=3e-16]} {RNA1310_144465}

Mlig455_064563 {REF} {Length: 2190} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=20.3]} {Smed: dd_Smed_v6_29877_0_1, dd_Smed_v6_29877_0_1, [Score=78.6, Expect=6e-16]} {RNA1310_118049}
3. MligTC455_13389 35 0.74 Mlig455_030163

Neo: -

Age: -

 1.748 - - - 0.958 0.790 - Mlig455_030163 {REF} {Length: 3160} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=97.3]} {Smed: dd_Smed_v6_13880_0_1, dd_Smed_v6_13880_0_1, [Score=93.2, Expect=4e-20]} {RNA1310_55606} {RNA815_37627}
4. MligTC455_39100 62 1.29 Mlig455_009476

Neo: -

Age: Down-Up-Down

Region-enriched R4: 3.504/0.03677

 CABP7 0.989 - - - - 0.989 - Mlig455_009476 {REF} {Length: 960} {Pfam: EF hand [PF00036.34, score=45.6]; EF-hand domain [PF13405.8, score=35.6]; EF-hand domain pair [PF13499.8, score=30.4]; EF-hand domain pair [PF13833.8, score=29.2]; EF hand [PF13202.8, score=28.1]} {Human: ENSG00000100314, CABP7, calcium binding protein 7, [Score=46.6, Expect=1e-05]} {Mouse: ENSMUSG00000009075, Cabp7, calcium binding protein 7, [Score=46.6, Expect=8e-06]} {Celegans: WBGene00015264, B0563.7, Uncharacterized calcium-binding protein B0563.7, [Score=50.4, Expect=3e-07]} {Smed: dd_Smed_v6_13677_0_1, dd_Smed_v6_13677_0_1, [RH, Score=185, Expect=1e-57]} {RNA1509_25282} {RNA1310_29885.1} {RNA815_14774.1}
5. MligTC455_14984 20 0.42 Mlig455_001609, Mlig455_060113

Neo: -

Age: Up-Down-Up

 TH 0.985 - 0.985 - - - -

Mlig455_001609 {REF} {Length: 2432} {Pfam: Biopterin-dependent aromatic amino acid hydroxylase [PF00351.23, score=530.6]} {Human: ENSG00000180176, TH, tyrosine hydroxylase, [RH, Score=461, Expect=8e-159]} {Mouse: ENSMUSG00000000214, Th, tyrosine hydroxylase, [RH, Score=452, Expect=3e-155]} {Dmel: FBgn0005626, ple, pale, [RH, Score=441, Expect=6e-151]} {Celegans: WBGene00000296, cat-2, Tyrosine 3-monooxygenase, [RH, Score=367, Expect=6e-122]} {Smed: dd_Smed_v6_16581_0_1, dd_Smed_v6_16581_0_1, [RH, Score=521, Expect=0.0]} {RNA1310_39883} {RNA815_37090}

Mlig455_060113 {REF} {Length: 2441} {Pfam: Biopterin-dependent aromatic amino acid hydroxylase [PF00351.23, score=530.6]} {Human: ENSG00000180176, TH, tyrosine hydroxylase, [RH, Score=461, Expect=9e-159]} {Mouse: ENSMUSG00000000214, Th, tyrosine hydroxylase, [RH, Score=452, Expect=3e-155]} {Dmel: FBgn0005626, ple, pale, [RH, Score=439, Expect=3e-150]} {Celegans: WBGene00000296, cat-2, Tyrosine 3-monooxygenase, [RH, Score=365, Expect=3e-121]} {Smed: dd_Smed_v6_16581_0_1, dd_Smed_v6_16581_0_1, [RH, Score=520, Expect=0.0]} {RNA1310_39883} {RNA815_37090}
6. MligTC455_35834 86 1.8 Mlig455_011961

Neo: -

Age: -

 CES4A 0.98 - - - - 0.980 - Mlig455_011961 {REF} {Length: 3668} {Pfam: Carboxylesterase family [PF00135.30, score=101.0]} {Human: ENSG00000172824, CES4A, carboxylesterase 4A, [Score=79.0, Expect=9e-15]} {Mouse: ENSMUSG00000050097, Ces2b, carboxyesterase 2B, [Score=81.6, Expect=1e-15]; ENSMUSG00000061825, Ces2c, carboxylesterase 2C, [Score=81.6, Expect=1e-15]} {Dmel: FBgn0004108, Nrt, Neurotactin, [RH, Score=104, Expect=7e-23]} {Celegans: WBGene00019477, K07C11.4, Carboxylic ester hydrolase, [Score=77.0, Expect=2e-14]} {Smed: dd_Smed_v6_4800_0_2, dd_Smed_v6_4800_0_2, [Score=56.6, Expect=4e-08]} {RNA1310_8940} {RNA815_4325.1}
7. MligTC455_32561 507 10.57 Mlig455_005261

Neo: -

Age: logFC(26M/2M)=-0.281

 NWD2 0.975 - - - - 0.975 - Mlig455_005261 {REF} {Length: 6130} {Human: ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=172, Expect=3e-42]} {Mouse: ENSMUSG00000090061, Nwd2, NACHT and WD repeat domain containing 2, [Score=159, Expect=2e-38]} {Dmel: FBgn0038397, CG10185, [Score=226, Expect=3e-59]} {Celegans: WBGene00020254, T05C3.2, [Score=233, Expect=3e-61]} {Smed: dd_Smed_v6_9637_0_1, dd_Smed_v6_9637_0_1, [RH, Score=669, Expect=0.0]} {RNA1509_2854, RNA1509_32196, RNA1509_40786} {RNA1310_588, RNA1509_2854, RNA1509_32196, RNA1509_40786} {RNA1509_2854, RNA1509_32196, RNA1509_40786, RNA815_179}
8. MligTC455_25671 1688 35.17 Mlig455_003489

Neo: -

Age: -

Region-enriched R4: 1.264/0.00364

 SLC15A1 0.974 - - - - 0.974 - Mlig455_003489 {REF} {Length: 5181} {TRANSSPLICED} {Pfam: POT family [PF00854.23, score=324.4]} {Human: ENSG00000088386, SLC15A1, solute carrier family 15 member 1, [RH, Score=424, Expect=8e-138]; ENSG00000163406, SLC15A2, solute carrier family 15 member 2, [RH, Score=405, Expect=2e-130]} {Mouse: ENSMUSG00000022899, Slc15a2, solute carrier family 15 (H+/peptide transporter), member 2, [RH, Score=431, Expect=6e-140]; ENSMUSG00000025557, Slc15a1, solute carrier family 15 (oligopeptide transporter), member 1, [RH, Score=429, Expect=8e-140]} {Dmel: FBgn0028491, CG2930, [RH, Score=429, Expect=6e-139]} {Celegans: WBGene00003876, pept-2, Peptide transporter family 2, [RH, Score=333, Expect=1e-102]} {Smed: dd_Smed_v6_6994_0_1, dd_Smed_v6_6994_0_1, [RH, Score=354, Expect=3e-111]} {RNA1509_5186} {RNA1310_7848} {RNA815_2366.1}
9. MligTC455_37761 12 0.26 Mlig455_014845

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_014845 {REF} {Length: 2142} {Pfam: CUB domain [PF00431.22, score=21.3]} {RNA1310_77188}
10. MligTC455_49211 30 0.63 Mlig455_044533

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_044533 {REF} {Length: 2489} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=139.7]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=62.0, Expect=5e-10]} {Smed: dd_Smed_v6_26469_0_1, dd_Smed_v6_26469_0_1, [Score=51.6, Expect=1e-07]} {RNA1509_50956} {RNA1310_27155} {RNA815_39321}
11. MligTC455_06043 3 0.06 Mlig455_056332

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_056332 {REF} {Length: 356} {NoTransDecoderORF}
12. MligTC455_37760 15 0.3 Mlig455_014788

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_014788 {REF} {Length: 2694} {Pfam: CUB domain [PF00431.22, score=48.3]} {RNA1310_77188}
13. MligTC455_33637 187 3.9 Mlig455_027211, Mlig455_027458

Neo: -

Age: -

Region-enriched R2: 3.458/0.04514

 CHRNA10, CHRNA7 0.966 - - - - 0.966 -

Mlig455_027211 {REF} {Length: 782} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=71.6]} {Human: ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=89.4, Expect=4e-20]; ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=89.4, Expect=4e-20]; ENSG00000166664, CHRFAM7A, CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, [Score=89.0, Expect=2e-20]; ENSG00000275917, CHRFAM7A, CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, [Score=89.0, Expect=1e-20]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=88.6, Expect=7e-20]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=88.6, Expect=7e-20]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=92.0, Expect=4e-21]} {Dmel: FBgn0004118, nAChRbeta2, nicotinic Acetylcholine Receptor beta2, [Score=81.6, Expect=9e-18]} {Celegans: WBGene00000048, acr-9, AcetylCholine Receptor, [Score=71.6, Expect=2e-14]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [Score=86.3, Expect=1e-19]} {RNA1310_19147.2} {RNA815_8553.2}

Mlig455_027458 {REF} {Length: 1493} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=93.3]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=71.5]} {Human: ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=149, Expect=1e-39]} {Mouse: ENSMUSG00000066279, Chrna10, cholinergic receptor, nicotinic, alpha polypeptide 10, [Score=148, Expect=1e-39]} {Dmel: FBgn0004118, nAChRbeta2, nicotinic Acetylcholine Receptor beta2, [Score=133, Expect=5e-34]} {Celegans: WBGene00000048, acr-9, AcetylCholine Receptor, [Score=144, Expect=6e-38]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [Score=144, Expect=7e-38]} {RNA1310_19147.2} {RNA815_8553.2}
14. MligTC455_26774 54 1.12 Mlig455_038949

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.339

 ANO7 0.965 - - - - 0.965 - Mlig455_038949 {REF} {Length: 4653} {Pfam: Calcium-activated chloride channel [PF04547.14, score=519.7]; Dimerisation domain of Ca+-activated chloride-channel, anoctamin [PF16178.7, score=243.5]} {Human: ENSG00000146205, ANO7, anoctamin 7, [RH, Score=875, Expect=0.0]} {Mouse: ENSMUSG00000034107, Ano7, anoctamin 7, [RH, Score=886, Expect=0.0]} {Dmel: FBgn0038721, subdued, [RH, Score=596, Expect=0.0]} {Celegans: WBGene00010138, anoh-1, Anoctamin, [Score=242, Expect=6e-68]} {Smed: dd_Smed_v6_4761_0_1, dd_Smed_v6_4761_0_1, [RH, Score=1092, Expect=0.0]} {RNA1509_15570} {RNA1310_5583.1} {RNA815_1646.1}
15. MligTC455_10605 2 0.04 Mlig455_047968

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_047968 {REF} {Length: 297} {NoTransDecoderORF} {RNA1509_34377} {RNA1310_100135} {RNA815_25886}
16. MligTC455_19126 10 0.2 Mlig455_009225

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_009225 {REF} {Length: 1570} {Pfam: Galactosyltransferase [PF01762.23, score=21.4]} {Mouse: ENSMUSG00000031803, B3gnt3, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3, [Score=50.4, Expect=1e-06]} {RNA1310_57689} {RNA815_57743}
17. MligTC455_55494 2 0.05 Mlig455_004790

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_004790 {REF} {Length: 600} {Pfam: Receptor family ligand binding region [PF01094.30, score=64.3]; Periplasmic binding protein [PF13458.8, score=19.1]}
18. MligTC455_00622 2 0.05 Mlig455_047108

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_047108 {REF} {Length: 64} {NoTransDecoderORF}
19. MligTC455_24950 10 0.21 Mlig455_054045

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.585

 AHNAK 0.959 - - - - 0.959 - Mlig455_054045 {REF} {Length: 4123} {Pfam: Herpes virus major outer envelope glycoprotein (BLLF1) [PF05109.15, score=23.5]; AAA domain [PF13166.8, score=18.0]} {Human: ENSG00000124942, AHNAK, AHNAK nucleoprotein, [Score=90.9, Expect=2e-17]} {Mouse: ENSMUSG00000069833, Ahnak, AHNAK nucleoprotein (desmoyokin), [Score=94.0, Expect=1e-18]} {Dmel: FBgn0259108, futsch, [Score=54.3, Expect=1e-06]} {RNA1310_26440.1} {RNA815_25850.1}
20. MligTC455_38997 19 0.39 Mlig455_066918

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_066918 {REF} {Length: 1492} {NoTransDecoderORF} {RNA1509_2373} {RNA1310_20626} {RNA815_9142}
21. MligTC455_06678 10 0.22 Mlig455_051040

Neo: -

Age: -

 SLC7A1 0.955 - - - - 0.955 - Mlig455_051040 {REF} {Length: 1969} {Pfam: Amino acid permease [PF13520.8, score=122.2]; Amino acid permease [PF00324.23, score=107.8]; C-terminus of AA_permease [PF13906.8, score=56.1]} {Human: ENSG00000139514, SLC7A1, solute carrier family 7 member 1, [Score=297, Expect=3e-92]} {Mouse: ENSMUSG00000041313, Slc7a1, solute carrier family 7 (cationic amino acid transporter, y+ system), member 1, [Score=300, Expect=2e-93]; ENSMUSG00000022756, Slc7a4, solute carrier family 7 (cationic amino acid transporter, y+ system), member 4, [Score=297, Expect=3e-92]; ENSMUSG00000054753, AU018091, expressed sequence AU018091, [Score=290, Expect=5e-89]; ENSMUSG00000107871, AU018091, expressed sequence AU018091, [Score=290, Expect=5e-89]} {Dmel: FBgn0036984, CG13248, [Score=290, Expect=1e-89]} {Celegans: WBGene00016806, C50D2.2, [Score=293, Expect=1e-91]} {Smed: dd_Smed_v6_8652_0_4, dd_Smed_v6_8652_0_4, [Score=436, Expect=3e-147]} {RNA1310_82370} {RNA815_51664}
22. MligTC455_32137 3 0.06 Mlig455_032362

Neo: -

Age: -

 PIF1 0.954 - - - - 0.954 - Mlig455_032362 {REF} {Length: 1962} {Pfam: PIF1-like helicase [PF05970.16, score=22.6]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=49.3, Expect=1e-05]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=49.7, Expect=8e-06]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=50.1, Expect=2e-06]} {RNA1509_2607} {RNA1310_5853.1} {RNA815_5517.1}
23. MligTC455_15081 19 0.39 Mlig455_065134

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_065134 {REF} {Length: 1297} {RNA1310_74150}
24. MligTC455_47158 42 0.88 Mlig455_002804

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_002804 {REF} {Length: 2223} {TRANSSPLICED} {RNA1509_26680} {RNA1310_28369.1} {RNA815_11304}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA