M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_14619

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_14619 10 0.21 Mlig455_030430, Mlig455_030467

Neo: -

Age: -

 STXBP5L

Mlig455_030430 {REF} {Length: 4860} {Pfam: LLGL2 [PF08366.15, score=65.1]; Synaptobrevin [PF00957.23, score=30.5]; WD domain, G-beta repeat [PF00400.34, score=25.9]; Lethal giant larvae(Lgl) like, C-terminal [PF08596.12, score=21.5]} {Human: ENSG00000145087, STXBP5L, syntaxin binding protein 5 like, [RH, Score=532, Expect=5e-166]; ENSG00000164506, STXBP5, syntaxin binding protein 5, [RH, Score=522, Expect=1e-162]} {Mouse: ENSMUSG00000019790, Stxbp5, syntaxin binding protein 5 (tomosyn), [RH, Score=528, Expect=3e-165]; ENSMUSG00000022829, Stxbp5l, syntaxin binding protein 5-like, [RH, Score=525, Expect=2e-163]} {Dmel: FBgn0030412, Tomosyn, [RH, Score=519, Expect=1e-158]} {Celegans: WBGene00006594, tom-1, TOM-1 isoform E; TOMosyn synaptic protein, [RH, Score=380, Expect=2e-110]} {Smed: dd_Smed_v6_7617_0_2, dd_Smed_v6_7617_0_2, [Score=490, Expect=2e-150]} {RNA1509_24055} {RNA1310_5273.1} {RNA815_4517}

Mlig455_030467 {REF} {Length: 5126} {Pfam: Synaptobrevin [PF00957.23, score=31.2]; LLGL2 [PF08366.15, score=30.8]; WD domain, G-beta repeat [PF00400.34, score=22.9]; Lethal giant larvae(Lgl) like, C-terminal [PF08596.12, score=22.1]} {Human: ENSG00000145087, STXBP5L, syntaxin binding protein 5 like, [Score=254, Expect=1e-69]; ENSG00000164506, STXBP5, syntaxin binding protein 5, [Score=251, Expect=3e-68]} {Mouse: ENSMUSG00000019790, Stxbp5, syntaxin binding protein 5 (tomosyn), [Score=253, Expect=3e-69]; ENSMUSG00000022829, Stxbp5l, syntaxin binding protein 5-like, [Score=246, Expect=4e-67]} {Dmel: FBgn0030412, Tomosyn, [Score=252, Expect=1e-68]} {Celegans: WBGene00006594, tom-1, TOM-1 isoform E; TOMosyn synaptic protein, [Score=173, Expect=9e-44]} {Smed: dd_Smed_v6_7617_0_2, dd_Smed_v6_7617_0_2, [Score=245, Expect=1e-66]} {RNA1509_24055} {RNA1310_7433} {RNA815_4517}

Cumulative graph for MligTC455_14619

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.93 0.573 1.00000 1.00000
RegionR2 2.753 0.573 0.99995 1.00000
RegionR3 0.798 0.573 0.99996 1.00000
RegionR4 -2.56 0.573 0.99983 1.00000
RegionR5 -0.302 0.573 0.99989 1.00000
RegionR6 0.342 0.573 0.99991 1.00000
RegionR7 1.012 0.573 0.99998 1.00000
RegionR8 0.888 0.573 0.99996 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.02 0.573 0.99994 1.00000
RegenerationR2 2.064 0.573 0.99968 1.00000
RegenerationR3 2.158 0.573 1.00000 1.00000
RegenerationR4 1.323 0.573 1.00000 1.00000
RegenerationR5 -0.156 0.573 0.99993 1.00000
RegenerationR6 -0.197 0.573 0.99996 1.00000
RegenerationBL -1.011 0.573 0.99992 1.00000
RegenerationTP 2.452 0.573 0.99981 1.00000


Genes with expression patterns similar to MligTC455_14619

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_14619 10 0.21 Mlig455_030430, Mlig455_030467

Neo: -

Age: -

 STXBP5L 1 - - - - 1.000 -

Mlig455_030430 {REF} {Length: 4860} {Pfam: LLGL2 [PF08366.15, score=65.1]; Synaptobrevin [PF00957.23, score=30.5]; WD domain, G-beta repeat [PF00400.34, score=25.9]; Lethal giant larvae(Lgl) like, C-terminal [PF08596.12, score=21.5]} {Human: ENSG00000145087, STXBP5L, syntaxin binding protein 5 like, [RH, Score=532, Expect=5e-166]; ENSG00000164506, STXBP5, syntaxin binding protein 5, [RH, Score=522, Expect=1e-162]} {Mouse: ENSMUSG00000019790, Stxbp5, syntaxin binding protein 5 (tomosyn), [RH, Score=528, Expect=3e-165]; ENSMUSG00000022829, Stxbp5l, syntaxin binding protein 5-like, [RH, Score=525, Expect=2e-163]} {Dmel: FBgn0030412, Tomosyn, [RH, Score=519, Expect=1e-158]} {Celegans: WBGene00006594, tom-1, TOM-1 isoform E; TOMosyn synaptic protein, [RH, Score=380, Expect=2e-110]} {Smed: dd_Smed_v6_7617_0_2, dd_Smed_v6_7617_0_2, [Score=490, Expect=2e-150]} {RNA1509_24055} {RNA1310_5273.1} {RNA815_4517}

Mlig455_030467 {REF} {Length: 5126} {Pfam: Synaptobrevin [PF00957.23, score=31.2]; LLGL2 [PF08366.15, score=30.8]; WD domain, G-beta repeat [PF00400.34, score=22.9]; Lethal giant larvae(Lgl) like, C-terminal [PF08596.12, score=22.1]} {Human: ENSG00000145087, STXBP5L, syntaxin binding protein 5 like, [Score=254, Expect=1e-69]; ENSG00000164506, STXBP5, syntaxin binding protein 5, [Score=251, Expect=3e-68]} {Mouse: ENSMUSG00000019790, Stxbp5, syntaxin binding protein 5 (tomosyn), [Score=253, Expect=3e-69]; ENSMUSG00000022829, Stxbp5l, syntaxin binding protein 5-like, [Score=246, Expect=4e-67]} {Dmel: FBgn0030412, Tomosyn, [Score=252, Expect=1e-68]} {Celegans: WBGene00006594, tom-1, TOM-1 isoform E; TOMosyn synaptic protein, [Score=173, Expect=9e-44]} {Smed: dd_Smed_v6_7617_0_2, dd_Smed_v6_7617_0_2, [Score=245, Expect=1e-66]} {RNA1509_24055} {RNA1310_7433} {RNA815_4517}
2. MligTC455_01284 7 0.14 Mlig455_037143

Neo: -

Age: -

 0.985 - - - - 0.985 - Mlig455_037143 {REF} {Length: 370} {NoTransDecoderORF}
3. MligTC455_13850 16 0.32 Mlig455_054006

Neo: -

Age: -

 0.979 - - - - 0.979 - Mlig455_054006 {REF} {Length: 4582} {Pfam: Glycine rich protein [PF12810.9, score=23.6]} {RNA1509_27849} {RNA1310_5710.1} {RNA815_6291.1}
4. MligTC455_06856 18 0.37 Mlig455_022133

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_022133 {REF} {Length: 440}
5. MligTC455_06293 103 2.15 Mlig455_053860, Mlig455_053875, Mlig455_055343

Neo: -

Age: -

 0.968 - - - - 0.968 -

Mlig455_053860 {REF} {Length: 469} {RNA1310_95227} {RNA815_45163}

Mlig455_053875 {REF} {Length: 533} {RNA1310_95227} {RNA815_45163}

Mlig455_055343 {REF} {Length: 526} {RNA1310_95227} {RNA815_45163}
6. MligTC455_57510 15 0.31 Mlig455_031579

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_031579 {REF} {Length: 222} {NoTransDecoderORF}
7. MligTC455_46115 57 1.18 Mlig455_048801

Neo: -

Age: Up-Down-Down

 CRY1 0.965 - - - - 0.965 - Mlig455_048801 {REF} {Length: 3004} {TRANSSPLICED} {Pfam: FAD binding domain of DNA photolyase [PF03441.16, score=194.5]; DNA photolyase [PF00875.20, score=139.4]} {Human: ENSG00000008405, CRY1, cryptochrome circadian regulator 1, [RH, Score=466, Expect=3e-157]; ENSG00000121671, CRY2, cryptochrome circadian regulator 2, [RH, Score=452, Expect=5e-152]} {Mouse: ENSMUSG00000020038, Cry1, cryptochrome 1 (photolyase-like), [RH, Score=465, Expect=6e-157]; ENSMUSG00000068742, Cry2, cryptochrome 2 (photolyase-like), [RH, Score=460, Expect=3e-155]} {Dmel: FBgn0016054, phr6-4, (6-4)-photolyase, [Score=361, Expect=1e-117]} {RNA1509_28219} {RNA1310_6554, RNA1509_28219} {RNA1509_28219, RNA815_8162}
8. MligTC455_46224 20 0.42 Mlig455_016364

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_016364 {REF} {Length: 2136} {RNA1509_32739} {RNA1310_9532} {RNA815_7243}
9. MligTC455_49893 373 7.77 Mlig455_025757, Mlig455_064377, Mlig455_064404

Neo: -

Age: -

Region-enriched R2: 4.474/0.00075

 0.961 - - - - 0.961 -

Mlig455_025757 {REF} {Length: 2253} {RNA1509_32294} {RNA1310_34331} {RNA815_21628}

Mlig455_064377 {REF} {Length: 2157} {RNA1509_32294, RNA1509_53280} {RNA1310_34331, RNA1509_53280} {RNA1509_53280, RNA815_21628}

Mlig455_064404 {REF} {Length: 3877} {RNA1509_32294} {RNA1310_34331, RNA1509_32294} {RNA1509_32294, RNA815_21628}
10. MligTC455_31395 29 0.6 Mlig455_062240

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_062240 {REF} {Length: 3633} {RNA1509_13764, RNA1509_15598} {RNA1310_87.2, RNA1509_13764, RNA1509_15598} {RNA1509_13764, RNA1509_15598, RNA815_3880}
11. MligTC455_03556 34 0.7 Mlig455_037044

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_037044 {REF} {Length: 1030} {NoTransDecoderORF} {RNA1509_57090} {RNA1310_93213} {RNA815_9381.1}
12. MligTC455_38629 14 0.29 Mlig455_038964

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_038964 {REF} {Length: 1633} {NoTransDecoderORF} {RNA1509_57189} {RNA1310_356.1} {RNA815_52888}
13. MligTC455_49337 141 2.94 Mlig455_004942

Neo: -

Age: -

Region-enriched R2: 4.260/0.00004
Region-enriched R7: 4.073/0.00000
Region-enriched R6: 2.891/0.00737

 CA7 0.958 - - - - 0.958 - Mlig455_004942 {REF} {Length: 2623} {Pfam: Eukaryotic-type carbonic anhydrase [PF00194.23, score=206.7]} {Human: ENSG00000168748, CA7, carbonic anhydrase 7, [Score=157, Expect=2e-45]} {Mouse: ENSMUSG00000031883, Car7, carbonic anhydrase 7, [Score=156, Expect=2e-45]} {Dmel: FBgn0027844, CAH1, Carbonic anhydrase 1, [Score=129, Expect=8e-35]} {Celegans: WBGene00000283, cah-5, Putative carbonic anhydrase 5, [Score=89.4, Expect=4e-20]} {Smed: dd_Smed_v6_11683_0_1, dd_Smed_v6_11683_0_1, [Score=160, Expect=1e-46]} {RNA1509_43765} {RNA1310_22186} {RNA815_18428}
14. MligTC455_43807 116 2.42 Mlig455_039186

Neo: -

Age: -

 TSFM 0.955 - - - - 0.955 - Mlig455_039186 {REF} {Length: 2161} {Pfam: Elongation factor TS [PF00889.21, score=41.3]} {Human: ENSG00000123297, TSFM, Ts translation elongation factor, mitochondrial, [Score=94.0, Expect=8e-21]} {Mouse: ENSMUSG00000040521, Tsfm, Ts translation elongation factor, mitochondrial, [Score=91.7, Expect=3e-20]} {Dmel: FBgn0032646, mEFTs, mitochondrial translation elongation factor Ts, [Score=76.3, Expect=4e-15]} {Celegans: WBGene00010094, tsfm-1, Elongation factor Ts, mitochondrial, [Score=69.7, Expect=5e-13]} {RNA1509_27635} {RNA1310_23628} {RNA815_13095}
15. MligTC455_37458 120 2.49 Mlig455_037280, Mlig455_042333, Mlig455_055120

Neo: -

Age: -

 CUBN 0.954 - - - - 0.954 -

Mlig455_037280 {REF} {Length: 3846} {Pfam: CUB domain [PF00431.22, score=68.6]} {Human: ENSG00000107611, CUBN, cubilin, [Score=56.6, Expect=3e-08]; ENSG00000157211, CDCP2, CUB domain containing protein 2, [Score=55.5, Expect=5e-08]} {Mouse: ENSMUSG00000022098, Bmp1, bone morphogenetic protein 1, [Score=55.5, Expect=6e-08]} {Dmel: FBgn0031879, uif, uninflatable, [Score=69.3, Expect=1e-12]} {Celegans: WBGene00011222, R10H10.3, [RH, Score=53.1, Expect=9e-08]} {Smed: dd_Smed_v6_5652_0_1, dd_Smed_v6_5652_0_1, [Score=52.0, Expect=3e-07]} {RNA1509_23859} {RNA1310_6101.1} {RNA815_2733.1}

Mlig455_042333 {REF} {Length: 1368} {Pfam: Integrase core domain [PF00665.28, score=32.9]} {Smed: dd_Smed_v6_11155_0_2, dd_Smed_v6_11155_0_2, [Score=60.1, Expect=4e-11]} {RNA1509_21400} {RNA1310_6101.1} {RNA815_2733.1}

Mlig455_055120 {REF} {Length: 884} {NoTransDecoderORF} {RNA1509_23859} {RNA1310_25192} {RNA815_24957.1}
16. MligTC455_42485 159 3.31 Mlig455_046457

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_046457 {REF} {Length: 846} {RNA1310_40237.1} {RNA815_18246}
17. MligTC455_17411 21 0.44 Mlig455_053642

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_053642 {REF} {Length: 1316} {RNA1509_57122} {RNA1310_32260} {RNA815_19996}
18. MligTC455_34749 10 0.21 Mlig455_026129

Neo: -

Age: Up-Down-Down

 RASGRF2 0.952 - - - - 0.952 - Mlig455_026129 {REF} {Length: 5810} {Pfam: RasGEF domain [PF00617.21, score=176.1]; RhoGEF domain [PF00621.22, score=96.8]; RasGEF N-terminal motif [PF00618.22, score=65.5]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=21.2]} {Human: ENSG00000113319, RASGRF2, Ras protein specific guanine nucleotide releasing factor 2, [Score=506, Expect=3e-158]} {Mouse: ENSMUSG00000032356, Rasgrf1, RAS protein-specific guanine nucleotide-releasing factor 1, [Score=484, Expect=2e-149]} {Dmel: FBgn0001965, Sos, Son of sevenless, [Score=136, Expect=6e-32]} {Celegans: WBGene00004947, sos-1, Son of sevenless homolog, [Score=105, Expect=1e-22]} {Smed: dd_Smed_v6_18313_0_2, dd_Smed_v6_18313_0_2, [Score=747, Expect=0.0]} {RNA1509_15697} {RNA1310_18289} {RNA815_21605.1}
19. MligTC455_21980 26 0.55 Mlig455_071130

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_071130 {REF} {Length: 825} {RNA1310_35056} {RNA815_23681}
20. MligTC455_33597 18 0.37 Mlig455_064394

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_064394 {REF} {Length: 2113} {NoTransDecoderORF} {RNA1509_19399} {RNA1310_110535} {RNA815_3469.2}
21. MligTC455_19567 76 1.59 Mlig455_017855, Mlig455_047877

Neo: -

Age: -

Region-enriched R2: 7.793/0.00005

 0.95 - - - - 0.950 -

Mlig455_017855 {REF} {Length: 1874} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=26.0]} {Smed: dd_Smed_v6_7534_0_1, dd_Smed_v6_7534_0_1, [RH, Score=179, Expect=3e-51]} {RNA1509_52053} {RNA1310_13207} {RNA815_13534}

Mlig455_047877 {REF} {Length: 1820} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=28.8]} {Smed: dd_Smed_v6_7534_0_1, dd_Smed_v6_7534_0_1, [RH, Score=179, Expect=2e-51]} {RNA1509_52053} {RNA1310_13207} {RNA815_13534}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA