M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_14901

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_14901 21 0.45 Mlig455_005866

Neo: Int S/G2/M

Age: Down-Up-Down

 Mlig455_005866 {REF} {Length: 1393} {RNA1310_44623.1} {RNA815_21422}

Cumulative graph for MligTC455_14901

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.126 0.82 1.00000 1.00000
RegionR2 0.658 0.82 1.00000 1.00000
RegionR3 0.344 0.82 1.00000 1.00000
RegionR4 -0.476 0.82 0.99994 1.00000
RegionR5 0.167 0.82 1.00000 1.00000
RegionR6 0.323 0.82 0.99998 1.00000
RegionR7 0.154 0.82 0.99999 1.00000
RegionR8 -0.044 0.82 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.521 0.82 1.00000 1.00000
RegenerationR2 2.876 0.82 0.06300 0.41190
RegenerationR3 4.385 0.82 0.03183 0.31834
RegenerationR4 3.9 0.82 0.03570 0.30539
RegenerationR5 2.627 0.82 0.09024 0.46197
RegenerationR6 3.397 0.82 0.10798 0.40662
RegenerationBL 1.919 0.82 0.40325 0.77257
RegenerationTP 3.444 0.82 0.24576 0.69248


Genes with expression patterns similar to MligTC455_14901

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_14901 21 0.45 Mlig455_005866

Neo: Int S/G2/M

Age: Down-Up-Down

 2 - - - - 1.000 1.000 Mlig455_005866 {REF} {Length: 1393} {RNA1310_44623.1} {RNA815_21422}
2. MligTC455_14535 169 3.53 Mlig455_046051

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.630

 ANK2 0.966 - - - - 0.966 - Mlig455_046051 {REF} {Length: 4680} {tRNA: Val(CAC),pseudo, score=31.6} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=243.3]; Ankyrin repeats (many copies) [PF13637.8, score=189.3]; Ankyrin repeat [PF00023.32, score=180.0]; Ankyrin repeats (many copies) [PF13857.8, score=142.3]; Ankyrin repeat [PF13606.8, score=133.9]; Caspase domain [PF00656.24, score=116.7]} {Human: ENSG00000145362, ANK2, ankyrin 2, [Score=177, Expect=1e-44]; ENSG00000151150, ANK3, ankyrin 3, [Score=169, Expect=6e-42]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=172, Expect=7e-43]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=169, Expect=6e-42]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=182, Expect=1e-46]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=168, Expect=4e-42]} {Smed: dd_Smed_v6_10835_0_2, dd_Smed_v6_10835_0_2, [Score=174, Expect=5e-44]} {RNA1509_20997, RNA1509_46578} {RNA1310_3110, RNA1509_20997, RNA1509_46578} {RNA1509_20997, RNA1509_46578, RNA815_5750}
3. MligTC455_20981 42 0.87 Mlig455_069544

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_069544 {REF} {Length: 1461} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_47234} {RNA1310_2938.1} {RNA815_14343.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA