TomoSeq data search

Data search

Results for MligTC455_15058

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_15058	141	2.93	Mlig455_060914, Mlig455_060977	Neo: - Age: -	KCNC1	Mlig455_060914 {REF} {Length: 3094} {Pfam: Ion transport protein [PF00520.33, score=101.8]; BTB/POZ domain [PF02214.24, score=60.2]; Ion channel [PF07885.18, score=59.1]} {Human: ENSG00000129159, KCNC1, potassium voltage-gated channel subfamily C member 1, [Score=209, Expect=3e-58]; ENSG00000166006, KCNC2, potassium voltage-gated channel subfamily C member 2, [Score=205, Expect=1e-56]; ENSG00000116396, KCNC4, potassium voltage-gated channel subfamily C member 4, [Score=203, Expect=8e-56]; ENSG00000158445, KCNB1, potassium voltage-gated channel subfamily B member 1, [Score=199, Expect=4e-53]} {Mouse: ENSMUSG00000058975, Kcnc1, potassium voltage gated channel, Shaw-related subfamily, member 1, [Score=209, Expect=3e-58]; ENSMUSG00000035681, Kcnc2, potassium voltage gated channel, Shaw-related subfamily, member 2, [Score=207, Expect=3e-57]; ENSMUSG00000027895, Kcnc4, potassium voltage gated channel, Shaw-related subfamily, member 4, [Score=205, Expect=1e-56]; ENSMUSG00000092083, Kcnb2, potassium voltage gated channel, Shab-related subfamily, member 2, [Score=199, Expect=4e-53]} {Dmel: FBgn0003386, Shaw, Shaker cognate w, [Score=214, Expect=2e-60]} {Celegans: WBGene00001202, egl-36, Potassium voltage-gated channel protein egl-36, [Score=209, Expect=6e-59]} {Smed: dd_Smed_v6_9740_0_1, dd_Smed_v6_9740_0_1, [Score=210, Expect=4e-59]} {RNA1310_16762} {RNA815_36114} Mlig455_060977 {REF} {Length: 3075} {Pfam: Ion transport protein [PF00520.33, score=101.8]; BTB/POZ domain [PF02214.24, score=60.2]; Ion channel [PF07885.18, score=59.1]} {Human: ENSG00000129159, KCNC1, potassium voltage-gated channel subfamily C member 1, [Score=209, Expect=3e-58]; ENSG00000166006, KCNC2, potassium voltage-gated channel subfamily C member 2, [Score=205, Expect=1e-56]; ENSG00000116396, KCNC4, potassium voltage-gated channel subfamily C member 4, [Score=203, Expect=8e-56]; ENSG00000158445, KCNB1, potassium voltage-gated channel subfamily B member 1, [Score=199, Expect=4e-53]} {Mouse: ENSMUSG00000058975, Kcnc1, potassium voltage gated channel, Shaw-related subfamily, member 1, [Score=209, Expect=3e-58]; ENSMUSG00000035681, Kcnc2, potassium voltage gated channel, Shaw-related subfamily, member 2, [Score=207, Expect=3e-57]; ENSMUSG00000027895, Kcnc4, potassium voltage gated channel, Shaw-related subfamily, member 4, [Score=205, Expect=1e-56]; ENSMUSG00000092083, Kcnb2, potassium voltage gated channel, Shab-related subfamily, member 2, [Score=199, Expect=4e-53]} {Dmel: FBgn0003386, Shaw, Shaker cognate w, [Score=214, Expect=2e-60]} {Celegans: WBGene00001202, egl-36, Potassium voltage-gated channel protein egl-36, [Score=209, Expect=6e-59]} {Smed: dd_Smed_v6_9740_0_1, dd_Smed_v6_9740_0_1, [Score=210, Expect=4e-59]} {RNA1310_16762} {RNA815_36114}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_15058

141

2.93

Mlig455_060914, Mlig455_060977

Neo: -

Age: -

KCNC1

Mlig455_060914 {REF} {Length: 3094} {Pfam: Ion transport protein [PF00520.33, score=101.8]; BTB/POZ domain [PF02214.24, score=60.2]; Ion channel [PF07885.18, score=59.1]} {Human: ENSG00000129159, KCNC1, potassium voltage-gated channel subfamily C member 1, [Score=209, Expect=3e-58]; ENSG00000166006, KCNC2, potassium voltage-gated channel subfamily C member 2, [Score=205, Expect=1e-56]; ENSG00000116396, KCNC4, potassium voltage-gated channel subfamily C member 4, [Score=203, Expect=8e-56]; ENSG00000158445, KCNB1, potassium voltage-gated channel subfamily B member 1, [Score=199, Expect=4e-53]} {Mouse: ENSMUSG00000058975, Kcnc1, potassium voltage gated channel, Shaw-related subfamily, member 1, [Score=209, Expect=3e-58]; ENSMUSG00000035681, Kcnc2, potassium voltage gated channel, Shaw-related subfamily, member 2, [Score=207, Expect=3e-57]; ENSMUSG00000027895, Kcnc4, potassium voltage gated channel, Shaw-related subfamily, member 4, [Score=205, Expect=1e-56]; ENSMUSG00000092083, Kcnb2, potassium voltage gated channel, Shab-related subfamily, member 2, [Score=199, Expect=4e-53]} {Dmel: FBgn0003386, Shaw, Shaker cognate w, [Score=214, Expect=2e-60]} {Celegans: WBGene00001202, egl-36, Potassium voltage-gated channel protein egl-36, [Score=209, Expect=6e-59]} {Smed: dd_Smed_v6_9740_0_1, dd_Smed_v6_9740_0_1, [Score=210, Expect=4e-59]} {RNA1310_16762} {RNA815_36114}

Mlig455_060977 {REF} {Length: 3075} {Pfam: Ion transport protein [PF00520.33, score=101.8]; BTB/POZ domain [PF02214.24, score=60.2]; Ion channel [PF07885.18, score=59.1]} {Human: ENSG00000129159, KCNC1, potassium voltage-gated channel subfamily C member 1, [Score=209, Expect=3e-58]; ENSG00000166006, KCNC2, potassium voltage-gated channel subfamily C member 2, [Score=205, Expect=1e-56]; ENSG00000116396, KCNC4, potassium voltage-gated channel subfamily C member 4, [Score=203, Expect=8e-56]; ENSG00000158445, KCNB1, potassium voltage-gated channel subfamily B member 1, [Score=199, Expect=4e-53]} {Mouse: ENSMUSG00000058975, Kcnc1, potassium voltage gated channel, Shaw-related subfamily, member 1, [Score=209, Expect=3e-58]; ENSMUSG00000035681, Kcnc2, potassium voltage gated channel, Shaw-related subfamily, member 2, [Score=207, Expect=3e-57]; ENSMUSG00000027895, Kcnc4, potassium voltage gated channel, Shaw-related subfamily, member 4, [Score=205, Expect=1e-56]; ENSMUSG00000092083, Kcnb2, potassium voltage gated channel, Shab-related subfamily, member 2, [Score=199, Expect=4e-53]} {Dmel: FBgn0003386, Shaw, Shaker cognate w, [Score=214, Expect=2e-60]} {Celegans: WBGene00001202, egl-36, Potassium voltage-gated channel protein egl-36, [Score=209, Expect=6e-59]} {Smed: dd_Smed_v6_9740_0_1, dd_Smed_v6_9740_0_1, [Score=210, Expect=4e-59]} {RNA1310_16762} {RNA815_36114}

Cumulative graph for MligTC455_15058

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	1.335	2.028	0.55413	1.00000
RegionR2	-0.788	2.028	0.40430	0.79800
RegionR3	-0.076	2.028	0.92488	1.00000
RegionR4	-1.015	2.028	0.30824	0.62236
RegionR5	-1.361	2.028	0.08600	0.27519
RegionR6	-0.986	2.028	0.23431	0.81770
RegionR7	0.748	2.028	0.43429	1.00000
RegionR8	2.141	2.028	0.05859	0.47293

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-6.985	2.028	0.19943	0.93959
RegenerationR2	-0.127	2.028	0.87262	1.00000
RegenerationR3	-0.89	2.028	0.29449	0.72645
RegenerationR4	-0.755	2.028	0.44637	0.84020
RegenerationR5	-0.375	2.028	0.67884	0.94377
RegenerationR6	-0.262	2.028	0.77230	0.96342
RegenerationBL	-0.117	2.028	0.86996	1.00000
RegenerationTP	-1.169	2.028	0.23662	0.68235

Genes with expression patterns similar to MligTC455_15058

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_15058	141	2.93	Mlig455_060914, Mlig455_060977	Neo: - Age: -	KCNC1	5	1.000	-	1.000	1.000	1.000	1.000	Mlig455_060914 {REF} {Length: 3094} {Pfam: Ion transport protein [PF00520.33, score=101.8]; BTB/POZ domain [PF02214.24, score=60.2]; Ion channel [PF07885.18, score=59.1]} {Human: ENSG00000129159, KCNC1, potassium voltage-gated channel subfamily C member 1, [Score=209, Expect=3e-58]; ENSG00000166006, KCNC2, potassium voltage-gated channel subfamily C member 2, [Score=205, Expect=1e-56]; ENSG00000116396, KCNC4, potassium voltage-gated channel subfamily C member 4, [Score=203, Expect=8e-56]; ENSG00000158445, KCNB1, potassium voltage-gated channel subfamily B member 1, [Score=199, Expect=4e-53]} {Mouse: ENSMUSG00000058975, Kcnc1, potassium voltage gated channel, Shaw-related subfamily, member 1, [Score=209, Expect=3e-58]; ENSMUSG00000035681, Kcnc2, potassium voltage gated channel, Shaw-related subfamily, member 2, [Score=207, Expect=3e-57]; ENSMUSG00000027895, Kcnc4, potassium voltage gated channel, Shaw-related subfamily, member 4, [Score=205, Expect=1e-56]; ENSMUSG00000092083, Kcnb2, potassium voltage gated channel, Shab-related subfamily, member 2, [Score=199, Expect=4e-53]} {Dmel: FBgn0003386, Shaw, Shaker cognate w, [Score=214, Expect=2e-60]} {Celegans: WBGene00001202, egl-36, Potassium voltage-gated channel protein egl-36, [Score=209, Expect=6e-59]} {Smed: dd_Smed_v6_9740_0_1, dd_Smed_v6_9740_0_1, [Score=210, Expect=4e-59]} {RNA1310_16762} {RNA815_36114} Mlig455_060977 {REF} {Length: 3075} {Pfam: Ion transport protein [PF00520.33, score=101.8]; BTB/POZ domain [PF02214.24, score=60.2]; Ion channel [PF07885.18, score=59.1]} {Human: ENSG00000129159, KCNC1, potassium voltage-gated channel subfamily C member 1, [Score=209, Expect=3e-58]; ENSG00000166006, KCNC2, potassium voltage-gated channel subfamily C member 2, [Score=205, Expect=1e-56]; ENSG00000116396, KCNC4, potassium voltage-gated channel subfamily C member 4, [Score=203, Expect=8e-56]; ENSG00000158445, KCNB1, potassium voltage-gated channel subfamily B member 1, [Score=199, Expect=4e-53]} {Mouse: ENSMUSG00000058975, Kcnc1, potassium voltage gated channel, Shaw-related subfamily, member 1, [Score=209, Expect=3e-58]; ENSMUSG00000035681, Kcnc2, potassium voltage gated channel, Shaw-related subfamily, member 2, [Score=207, Expect=3e-57]; ENSMUSG00000027895, Kcnc4, potassium voltage gated channel, Shaw-related subfamily, member 4, [Score=205, Expect=1e-56]; ENSMUSG00000092083, Kcnb2, potassium voltage gated channel, Shab-related subfamily, member 2, [Score=199, Expect=4e-53]} {Dmel: FBgn0003386, Shaw, Shaker cognate w, [Score=214, Expect=2e-60]} {Celegans: WBGene00001202, egl-36, Potassium voltage-gated channel protein egl-36, [Score=209, Expect=6e-59]} {Smed: dd_Smed_v6_9740_0_1, dd_Smed_v6_9740_0_1, [Score=210, Expect=4e-59]} {RNA1310_16762} {RNA815_36114}
2.	MligTC455_39370	144	2.99	Mlig455_064116	Neo: - Age: -		1.782	-	-	-	0.954	-	0.828	Mlig455_064116 {REF} {Length: 1851} {NoTransDecoderORF} {RNA1310_47097} {RNA815_28937}
3.	MligTC455_20390	87	1.82	Mlig455_051716	Neo: - Age: -	SLC1A2	0.974	-	-	-	0.974	-	-	Mlig455_051716 {REF} {Length: 4683} {Pfam: Sodium:dicarboxylate symporter family [PF00375.20, score=432.6]} {Human: ENSG00000110436, SLC1A2, solute carrier family 1 member 2, [RH, Score=530, Expect=0.0]} {Mouse: ENSMUSG00000005089, Slc1a2, solute carrier family 1 (glial high affinity glutamate transporter), member 2, [RH, Score=545, Expect=0.0]} {Dmel: FBgn0026439, Eaat1, Excitatory amino acid transporter 1, [RH, Score=375, Expect=4e-124]} {Celegans: WBGene00001620, glt-1, Excitatory amino acid transporter, [RH, Score=517, Expect=1e-179]} {Smed: dd_Smed_v6_7570_0_1, dd_Smed_v6_7570_0_1, [RH, Score=611, Expect=0.0]} {RNA1509_31315} {RNA1310_5180} {RNA815_8754}
4.	MligTC455_43962	120	2.5	Mlig455_020783	Neo: - Age: -	TRAF5	0.962	-	-	-	0.962	-	-	Mlig455_020783 {REF} {Length: 3242} {Human: ENSG00000082512, TRAF5, TNF receptor associated factor 5, [Score=90.5, Expect=3e-20]} {Mouse: ENSMUSG00000026637, Traf5, TNF receptor-associated factor 5, [Score=88.6, Expect=1e-20]; ENSMUSG00000111385, Traf5, TNF receptor-associated factor 5, [Score=88.6, Expect=1e-20]} {Dmel: FBgn0026319, Traf4, TNF-receptor-associated factor 4, [Score=70.9, Expect=6e-14]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=99.0, Expect=8e-24]} {Smed: dd_Smed_v6_13517_0_1, dd_Smed_v6_13517_0_1, [Score=132, Expect=8e-36]} {RNA1310_36792.1} {RNA815_40908}
5.	MligTC455_36750	302	6.29	Mlig455_048034	Neo: - Age: - Region-enriched R7: 2.825/0.00248 Region-enriched R2: 2.548/0.00995		0.959	-	-	-	-	-	0.959	Mlig455_048034 {REF} {Length: 809} {RNA1310_41963} {RNA815_46048}
6.	MligTC455_49663	245	5.1	Mlig455_013565	Neo: - Age: -	CDH23	0.959	-	-	-	0.959	-	-	Mlig455_013565 {REF} {Length: 7289} {Pfam: Cadherin domain [PF00028.19, score=361.2]; Cadherin-like [PF08266.14, score=38.9]} {Human: ENSG00000107736, CDH23, cadherin related 23, [Score=372, Expect=1e-103]} {Mouse: ENSMUSG00000012819, Cdh23, cadherin 23 (otocadherin), [Score=375, Expect=6e-105]} {Dmel: FBgn0038247, Cad88C, Cadherin 88C, [Score=362, Expect=2e-101]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=224, Expect=2e-58]} {Smed: dd_Smed_v6_15356_0_1, dd_Smed_v6_15356_0_1, [Score=414, Expect=3e-118]} {RNA1509_16482} {RNA1310_682} {RNA815_249}
7.	MligTC455_05870	60	1.25	Mlig455_062138	Neo: - Age: -		0.958	-	-	-	-	-	0.958	Mlig455_062138 {REF} {Length: 1049} {NoTransDecoderORF} {RNA1310_117144}
8.	MligTC455_51194	408	8.5	Mlig455_007624, Mlig455_007645	Neo: - Age: - Region-specific R2: 3.993 Region-enriched R2: 3.717/0.00015	CDK5R1	0.958	-	-	-	0.958	-	-	Mlig455_007624 {REF} {Length: 1990} {Pfam: Cyclin-dependent kinase 5 activator protein [PF03261.17, score=249.2]} {Human: ENSG00000176749, CDK5R1, cyclin dependent kinase 5 regulatory subunit 1, [RH, Score=191, Expect=7e-57]} {Mouse: ENSMUSG00000048895, Cdk5r1, cyclin-dependent kinase 5, regulatory subunit 1 (p35), [RH, Score=191, Expect=6e-57]} {Dmel: FBgn0027491, Cdk5alpha, Cdk5 activator-like protein, [RH, Score=199, Expect=2e-58]} {Celegans: WBGene00011955, cdka-1, Cyclin-dependent kinase 5 activator 1, [RH, Score=176, Expect=6e-51]} {Smed: dd_Smed_v6_13788_0_1, dd_Smed_v6_13788_0_1, [RH, Score=215, Expect=1e-66]} {RNA1509_28436} {RNA1310_14097} {RNA815_13436} Mlig455_007645 {REF} {Length: 1937} {Pfam: Cyclin-dependent kinase 5 activator protein [PF03261.17, score=249.3]} {Human: ENSG00000176749, CDK5R1, cyclin dependent kinase 5 regulatory subunit 1, [RH, Score=191, Expect=8e-57]} {Mouse: ENSMUSG00000048895, Cdk5r1, cyclin-dependent kinase 5, regulatory subunit 1 (p35), [RH, Score=191, Expect=5e-57]} {Dmel: FBgn0027491, Cdk5alpha, Cdk5 activator-like protein, [RH, Score=199, Expect=3e-58]} {Celegans: WBGene00011955, cdka-1, Cyclin-dependent kinase 5 activator 1, [RH, Score=177, Expect=2e-51]} {Smed: dd_Smed_v6_13788_0_1, dd_Smed_v6_13788_0_1, [RH, Score=216, Expect=1e-66]} {RNA1509_28436} {RNA1310_14097} {RNA815_13436}
9.	MligTC455_41929	42	0.87	Mlig455_058092	Neo: - Age: Down-Up-Down		0.956	-	-	-	0.956	-	-	Mlig455_058092 {REF} {Length: 1217} {NoTransDecoderORF} {RNA1509_11856} {RNA1310_9867.2} {RNA815_18841.1}
10.	MligTC455_33704	135	2.81	Mlig455_002733	Neo: - Age: Up-Down-Down	COL5A2	0.954	-	-	-	0.954	-	-	Mlig455_002733 {REF} {Length: 6615} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=136.4]; Myotubularin protein [PF12335.10, score=23.9]} {Human: ENSG00000204262, COL5A2, collagen type V alpha 2 chain, [Score=113, Expect=6e-25]; ENSG00000049089, COL9A2, collagen type IX alpha 2 chain, [Score=111, Expect=1e-24]} {Mouse: ENSMUSG00000026147, Col9a1, collagen, type IX, alpha 1, [Score=124, Expect=2e-28]; ENSMUSG00000026042, Col5a2, collagen, type V, alpha 2, [Score=122, Expect=1e-27]; ENSMUSG00000041984, Rptn, repetin, [Score=121, Expect=1e-27]; ENSMUSG00000045672, Col27a1, collagen, type XXVII, alpha 1, [Score=120, Expect=3e-27]} {Dmel: FBgn0016075, vkg, viking, [Score=106, Expect=5e-23]} {Celegans: WBGene00000708, col-135, COLlagen, [Score=84.0, Expect=2e-16]} {Smed: dd_Smed_v6_8075_0_1, dd_Smed_v6_8075_0_1, [Score=140, Expect=9e-34]} {RNA1310_28728} {RNA815_22052}
11.	MligTC455_34454	243	5.07	Mlig455_037172	Neo: - Age: -		0.953	-	-	-	0.953	-	-	Mlig455_037172 {REF} {Length: 2260} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=22.3]; RING-type zinc-finger [PF13445.8, score=22.0]; zinc finger of C3HC4-type, RING [PF15227.8, score=21.0]} {RNA1509_37797} {RNA1310_14955.1, RNA1509_37797} {RNA1509_37797, RNA815_10713}
12.	MligTC455_25059	318	6.63	Mlig455_011858	Neo: - Age: logFC(26M/2M)=-0.243 Regeneration-downregulated BL: -7.201 Regeneration-depleted BL: -7.201	RASEF	0.951	-	-	-	-	-	0.951	Mlig455_011858 {REF} {Length: 4102} {Pfam: Ras family [PF00071.24, score=167.3]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=104.0]; ADP-ribosylation factor family [PF00025.23, score=55.2]; EF-hand domain pair [PF13499.8, score=42.0]; EF hand [PF00036.34, score=41.4]; EF-hand domain [PF13405.8, score=39.3]; 50S ribosome-binding GTPase [PF01926.25, score=35.1]; EF-hand domain pair [PF13833.8, score=33.0]; EF hand [PF13202.8, score=28.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.9]; Gtr1/RagA G protein conserved region [PF04670.14, score=21.8]; Signal recognition particle receptor beta subunit [PF09439.12, score=21.8]} {Human: ENSG00000165105, RASEF, RAS and EF-hand domain containing, [RH, Score=221, Expect=9e-61]} {Mouse: ENSMUSG00000043003, Rasef, RAS and EF hand domain containing, [RH, Score=222, Expect=9e-63]} {Dmel: FBgn0285937, Rab1, [Score=145, Expect=2e-39]} {Celegans: WBGene00016344, rsef-1, Ras and EF-hand domain-containing protein homolog, [RH, Score=188, Expect=3e-50]} {Smed: dd_Smed_v6_4284_0_1, dd_Smed_v6_4284_0_1, [RH, Score=225, Expect=2e-62]} {RNA1509_21698} {RNA1310_2939.1, RNA1509_21698} {RNA1509_21698, RNA815_9067}