M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_15325

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_15325 388 8.09 Mlig455_018815

Neo: -

Age: -

 CAPN7 Mlig455_018815 {REF} {Length: 2835} {TRANSSPLICED} {Pfam: Calpain family cysteine protease [PF00648.23, score=151.6]; Calpain large subunit, domain III [PF01067.24, score=65.9]; MIT (microtubule interacting and transport) domain [PF04212.20, score=57.8]} {Human: ENSG00000131375, CAPN7, calpain 7, [RH, Score=817, Expect=0.0]} {Mouse: ENSMUSG00000021893, Capn7, calpain 7, [RH, Score=829, Expect=0.0]} {Dmel: FBgn0003464, sol, small optic lobes, [Score=121, Expect=1e-27]} {Celegans: WBGene00000543, clp-2, CaLPain family, [RH, Score=622, Expect=0.0]} {Smed: dd_Smed_v6_6402_0_1, dd_Smed_v6_6402_0_1, [RH, Score=811, Expect=0.0]} {RNA1509_9441} {RNA1310_7284} {RNA815_5790}

Cumulative graph for MligTC455_15325

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.559 3.463 0.12347 0.71763
RegionR2 0.721 3.463 0.20589 0.56839
RegionR3 0.282 3.463 0.54746 1.00000
RegionR4 0.278 3.463 0.60501 0.91717
RegionR5 0.083 3.463 0.84886 1.00000
RegionR6 0.519 3.463 0.27200 0.86118
RegionR7 0.27 3.463 0.65227 1.00000
RegionR8 0.406 3.463 0.55322 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.143 3.463 0.51072 1.00000
RegenerationR2 0.208 3.463 0.61485 0.92112
RegenerationR3 0.229 3.463 0.64587 0.92713
RegenerationR4 0.126 3.463 0.80197 0.98720
RegenerationR5 0.392 3.463 0.38697 0.78967
RegenerationR6 0.337 3.463 0.49516 0.80243
RegenerationBL -1.886 3.463 0.02566 0.17622
RegenerationTP 0.324 3.463 0.59345 0.95674


Genes with expression patterns similar to MligTC455_15325

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_15325 388 8.09 Mlig455_018815

Neo: -

Age: -

 CAPN7 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_018815 {REF} {Length: 2835} {TRANSSPLICED} {Pfam: Calpain family cysteine protease [PF00648.23, score=151.6]; Calpain large subunit, domain III [PF01067.24, score=65.9]; MIT (microtubule interacting and transport) domain [PF04212.20, score=57.8]} {Human: ENSG00000131375, CAPN7, calpain 7, [RH, Score=817, Expect=0.0]} {Mouse: ENSMUSG00000021893, Capn7, calpain 7, [RH, Score=829, Expect=0.0]} {Dmel: FBgn0003464, sol, small optic lobes, [Score=121, Expect=1e-27]} {Celegans: WBGene00000543, clp-2, CaLPain family, [RH, Score=622, Expect=0.0]} {Smed: dd_Smed_v6_6402_0_1, dd_Smed_v6_6402_0_1, [RH, Score=811, Expect=0.0]} {RNA1509_9441} {RNA1310_7284} {RNA815_5790}
2. MligTC455_15324 212 4.42 Mlig455_018628

Neo: -

Age: -

 CAPN7 4.186 0.980 0.962 - 0.717 0.739 0.788 Mlig455_018628 {REF} {Length: 2837} {TRANSSPLICED} {Pfam: Calpain family cysteine protease [PF00648.23, score=151.6]; Calpain large subunit, domain III [PF01067.24, score=65.5]; MIT (microtubule interacting and transport) domain [PF04212.20, score=58.0]} {Human: ENSG00000131375, CAPN7, calpain 7, [RH, Score=818, Expect=0.0]} {Mouse: ENSMUSG00000021893, Capn7, calpain 7, [RH, Score=830, Expect=0.0]} {Dmel: FBgn0003464, sol, small optic lobes, [Score=121, Expect=1e-27]} {Celegans: WBGene00000543, clp-2, CaLPain family, [RH, Score=621, Expect=0.0]} {Smed: dd_Smed_v6_6402_0_1, dd_Smed_v6_6402_0_1, [RH, Score=812, Expect=0.0]} {RNA1509_9441} {RNA1310_7284} {RNA815_5790}
3. MligTC455_45128 622 12.96 Mlig455_038950

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.414

 MINDY3 0.956 - - - - 0.956 - Mlig455_038950 {REF} {Length: 8585} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4205) [PF13898.8, score=141.0]; EF-hand domain [PF14658.8, score=19.8]} {Human: ENSG00000148481, MINDY3, MINDY lysine 48 deubiquitinase 3, [RH, Score=267, Expect=2e-84]} {Mouse: ENSMUSG00000026767, Mindy3, MINDY lysine 48 deubiquitinase 3, [RH, Score=266, Expect=4e-84]} {Dmel: FBgn0030973, CG7332, [RH, Score=231, Expect=8e-70]} {Smed: dd_Smed_v6_11651_0_1, dd_Smed_v6_11651_0_1, [RH, Score=297, Expect=1e-96]} {RNA1509_12442, RNA1509_15960, RNA1509_29919, RNA1509_33752, RNA1509_35628, RNA1509_37245, RNA1509_45651, RNA1509_46658, RNA1509_48436, RNA1509_5089, RNA1509_51876, RNA1509_56805} {RNA1310_21259, RNA1509_12442, RNA1509_15960, RNA1509_29919, RNA1509_33752, RNA1509_35628, RNA1509_37245, RNA1509_45651, RNA1509_46658, RNA1509_48436, RNA1509_5089, RNA1509_51876, RNA1509_56805} {RNA1509_12442, RNA1509_15960, RNA1509_29919, RNA1509_33752, RNA1509_35628, RNA1509_37245, RNA1509_45651, RNA1509_46658, RNA1509_48436, RNA1509_5089, RNA1509_51876, RNA1509_56805, RNA815_9061}
4. MligTC455_53300 365 7.6 Mlig455_070521

Neo: -

Age: -

 PRKCA 0.95 - - - 0.950 - - Mlig455_070521 {REF} {Length: 3976} {Pfam: Protein kinase domain [PF00069.27, score=211.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=124.8]; C2 domain [PF00168.32, score=100.4]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=81.1]; Protein kinase C terminal domain [PF00433.26, score=23.6]; C1 domain [PF03107.18, score=22.4]} {Human: ENSG00000154229, PRKCA, protein kinase C alpha, [Score=907, Expect=0.0]; ENSG00000166501, PRKCB, protein kinase C beta, [Score=905, Expect=0.0]} {Mouse: ENSMUSG00000050965, Prkca, protein kinase C, alpha, [Score=908, Expect=0.0]; ENSMUSG00000052889, Prkcb, protein kinase C, beta, [Score=907, Expect=0.0]} {Dmel: FBgn0003091, Pkc53E, Protein C kinase 53E, [Score=872, Expect=0.0]} {Celegans: WBGene00004033, pkc-2, Protein kinase C-like 2, [Score=858, Expect=0.0]} {Smed: dd_Smed_v6_4244_0_2, dd_Smed_v6_4244_0_2, [Score=968, Expect=0.0]} {RNA1509_23339} {RNA1310_7395} {RNA815_2012.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA