M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_15372

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_15372 24 0.51 Mlig455_021909, Mlig455_022043

Neo: -

Age: Up-Down-Down

Mlig455_021909 {REF} {Length: 168} {NoTransDecoderORF}

Mlig455_022043 {REF} {Length: 1386} {NoTransDecoderORF} {RNA1310_33672} {RNA815_41639}

Cumulative graph for MligTC455_15372

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.482 1.052 0.99997 1.00000
RegionR2 -0.533 1.052 0.99987 1.00000
RegionR3 0.147 1.052 0.99999 1.00000
RegionR4 -0.106 1.052 0.99993 1.00000
RegionR5 -0.032 1.052 0.99995 1.00000
RegionR6 -0.614 1.052 0.99994 1.00000
RegionR7 -0.175 1.052 1.00000 1.00000
RegionR8 0.83 1.052 0.99995 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.769 1.052 1.00000 1.00000
RegenerationR2 1.947 1.052 0.18979 0.63375
RegenerationR3 3.314 1.052 0.16462 0.59878
RegenerationR4 2.029 1.052 0.22228 0.67097
RegenerationR5 2.534 1.052 0.17133 0.59939
RegenerationR6 4.262 1.052 0.07074 0.33258
RegenerationBL 1.823 1.052 0.42390 0.79204
RegenerationTP -1.047 1.052 0.99995 1.00000


Genes with expression patterns similar to MligTC455_15372

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_15372 24 0.51 Mlig455_021909, Mlig455_022043

Neo: -

Age: Up-Down-Down

 3 - - - 1.000 1.000 1.000

Mlig455_021909 {REF} {Length: 168} {NoTransDecoderORF}

Mlig455_022043 {REF} {Length: 1386} {NoTransDecoderORF} {RNA1310_33672} {RNA815_41639}
2. MligTC455_09372 2 0.05 Mlig455_036007

Neo: -

Age: -

 0.983 - - - - - 0.983 Mlig455_036007 {REF} {Length: 1412} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_28683} {RNA1310_86428} {RNA815_3064.1}
3. MligTC455_26479 67 1.39 Mlig455_023315

Neo: -

Age: Up-Down-Down

 0.963 - - - - - 0.963 Mlig455_023315 {REF} {Length: 1226} {RNA1509_470} {RNA1310_1300.1} {RNA815_622}
4. MligTC455_11716 16 0.32 Mlig455_060156

Neo: -

Age: -

 0.962 - - - - - 0.962 Mlig455_060156 {REF} {Length: 2150} {RNA1509_40399} {RNA1310_86013} {RNA815_53527}
5. MligTC455_06817 4 0.08 Mlig455_017287, Mlig455_045286

Neo: -

Age: -

 CLEC17A 0.961 - - - - - 0.961

Mlig455_017287 {REF} {Length: 7880} {Pfam: Lectin C-type domain [PF00059.23, score=36.5]; F5/8 type C domain [PF00754.27, score=21.4]} {RNA1310_132176}

Mlig455_045286 {REF} {Length: 8489} {Pfam: Lectin C-type domain [PF00059.23, score=40.4]} {Human: ENSG00000187912, CLEC17A, C-type lectin domain containing 17A, [Score=53.5, Expect=4e-06]} {RNA1310_132176} {RNA815_15431.1}
6. MligTC455_44420 1066 22.21 Mlig455_020305

Neo: Int S/G2/M

Age: Down-Down-Down, logFC(26M/2M)=-0.799

 0.959 - - - - - 0.959 Mlig455_020305 {REF} {Length: 443} {TRANSSPLICED} {RNA1509_12741} {RNA1310_71176, RNA1509_12741} {RNA1509_12741, RNA815_36246}
7. MligTC455_14945 72 1.49 Mlig455_014050

Neo: -

Age: logFC(26M/2M)=-0.387

 0.956 - - - 0.956 - - Mlig455_014050 {REF} {Length: 3190} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=53.2]} {Smed: dd_Smed_v6_6819_0_1, dd_Smed_v6_6819_0_1, [Score=143, Expect=6e-39]} {RNA1509_41226} {RNA1310_15569} {RNA815_3347.1}
8. MligTC455_22458 3020 62.91 Mlig455_004517, Mlig455_064242

Neo: Neoblast

Age: Up-Down-Up

 TCF25 0.955 - - - - - 0.955

Mlig455_004517 {REF} {Length: 1719} {Pfam: Transcriptional repressor TCF25 [PF04910.16, score=285.7]} {Human: ENSG00000141002, TCF25, transcription factor 25, [RH, Score=301, Expect=3e-94]} {Mouse: ENSMUSG00000001472, Tcf25, transcription factor 25 (basic helix-loop-helix), [RH, Score=297, Expect=4e-93]} {Dmel: FBgn0027549, CG7927, [Score=220, Expect=3e-64]} {Celegans: WBGene00010620, K07A12.1, [Score=178, Expect=7e-49]} {Smed: dd_Smed_v6_7136_0_1, dd_Smed_v6_7136_0_1, [Score=144, Expect=2e-37]} {RNA1509_2192} {RNA1310_9021} {RNA815_8563}

Mlig455_064242 {REF} {Length: 2212} {TRANSSPLICED} {Pfam: Transcriptional repressor TCF25 [PF04910.16, score=287.2]} {Human: ENSG00000141002, TCF25, transcription factor 25, [RH, Score=310, Expect=7e-96]} {Mouse: ENSMUSG00000001472, Tcf25, transcription factor 25 (basic helix-loop-helix), [RH, Score=309, Expect=5e-96]} {Dmel: FBgn0027549, CG7927, [RH, Score=241, Expect=4e-70]} {Celegans: WBGene00010620, K07A12.1, [Score=192, Expect=5e-53]} {Smed: dd_Smed_v6_7136_0_1, dd_Smed_v6_7136_0_1, [RH, Score=151, Expect=7e-39]} {RNA1509_2192} {RNA1310_9021} {RNA815_8563}
9. MligTC455_18213 712 14.83 Mlig455_009427

Neo: -

Age: -

Region-enriched R4: 1.137/0.02932

 TAF8 0.953 - - - - 0.953 - Mlig455_009427 {REF} {Length: 1128} {TRANSSPLICED} {Pfam: Bromodomain associated [PF07524.15, score=42.4]; Transcription factor TFIID complex subunit 8 C-term [PF10406.11, score=34.7]} {Human: ENSG00000137413, TAF8, TATA-box binding protein associated factor 8, [RH, Score=115, Expect=1e-29]} {Mouse: ENSMUSG00000023980, Taf8, TATA-box binding protein associated factor 8, [RH, Score=115, Expect=7e-30]} {Celegans: WBGene00006390, taf-8, TAF (TBP-associated transcription factor) family, [RH, Score=54.3, Expect=4e-08]} {RNA1509_45224} {RNA1310_31695} {RNA815_5220}
10. MligTC455_00892 28 0.59 Mlig455_025905

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_025905 {REF} {Length: 994} {NoTransDecoderORF} {RNA1509_33187} {RNA1310_15716.1} {RNA815_44681}
11. MligTC455_14944 68 1.43 Mlig455_014042

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_014042 {REF} {Length: 2089} {RNA1509_41226} {RNA1310_8869.3} {RNA815_39170}
12. MligTC455_26850 10 0.2 Mlig455_053810, Mlig455_062626, Mlig455_065211, Mlig455_067535

Neo: -

Age: Down-Up-Down

 PIF1 0.95 - - - - - 0.950

Mlig455_053810 {REF} {Length: 7740} {Pfam: PIF1-like helicase [PF05970.16, score=324.4]; Helitron helicase-like domain at N-terminus [PF14214.8, score=198.3]; AAA domain [PF13604.8, score=47.6]; Helicase [PF02689.16, score=22.4]; UvrD-like helicase C-terminal domain [PF13538.8, score=19.8]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=97.4, Expect=1e-19]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=91.3, Expect=4e-18]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=89.7, Expect=1e-17]} {Celegans: WBGene00019136, F59H6.5, [RH, Score=791, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=105, Expect=8e-23]} {RNA1509_48797} {RNA1310_4110, RNA1509_48797} {RNA1509_48797, RNA815_358.1}

Mlig455_062626 {REF} {Length: 2702} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=197.3]} {Celegans: WBGene00019136, F59H6.5, [Score=425, Expect=9e-130]} {Smed: dd_Smed_v6_22430_0_1, dd_Smed_v6_22430_0_1, [Score=66.2, Expect=4e-13]} {RNA1509_45012} {RNA1310_4110} {RNA815_358.1}

Mlig455_065211 {REF} {Length: 6180} {Pfam: PIF1-like helicase [PF05970.16, score=253.4]; Helitron helicase-like domain at N-terminus [PF14214.8, score=189.6]; AAA domain [PF13604.8, score=47.8]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=58.2, Expect=1e-07]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=56.6, Expect=1e-07]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=63.5, Expect=1e-09]} {Celegans: WBGene00022692, ZK250.9, [Score=624, Expect=0.0]} {Smed: dd_Smed_v6_22430_0_1, dd_Smed_v6_22430_0_1, [Score=75.9, Expect=3e-16]} {RNA1509_48797, RNA1509_51142} {RNA1310_4110, RNA1509_51142} {RNA1509_51142, RNA815_358.1}

Mlig455_067535 {REF} {Length: 2702} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=197.3]} {Celegans: WBGene00019136, F59H6.5, [Score=423, Expect=3e-129]} {Smed: dd_Smed_v6_22430_0_1, dd_Smed_v6_22430_0_1, [Score=66.2, Expect=4e-13]} {RNA1509_45012} {RNA1310_4110} {RNA815_358.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA