M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_15411

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_15411 21 0.43 Mlig455_030224

Neo: -

Age: -

 Mlig455_030224 {REF} {Length: 1593} {RNA1509_36146} {RNA1310_74878} {RNA815_9852.1}

Cumulative graph for MligTC455_15411

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.393 0.71 0.63983 1.00000
RegionR2 1.528 0.71 0.76538 1.00000
RegionR3 0.236 0.71 0.20490 0.74496
RegionR4 -0.259 0.71 0.19563 0.47375
RegionR5 -2.084 0.71 0.84612 1.00000
RegionR6 0.756 0.71 0.48574 1.00000
RegionR7 0.712 0.71 0.99996 1.00000
RegionR8 1.504 0.71 0.99988 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.829 0.71 0.99991 1.00000
RegenerationR2 -2.376 0.71 0.32039 0.75863
RegenerationR3 -1.535 0.71 0.38370 0.79221
RegenerationR4 -1.175 0.71 0.51924 0.87893
RegenerationR5 -0.057 0.71 0.41480 0.80833
RegenerationR6 -1.698 0.71 0.43199 0.75870
RegenerationBL -1.992 0.71 0.41851 0.78706
RegenerationTP -3.046 0.71 0.60260 0.96228


Genes with expression patterns similar to MligTC455_15411

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_15411 21 0.43 Mlig455_030224

Neo: -

Age: -

 1 1.000 - - - - - Mlig455_030224 {REF} {Length: 1593} {RNA1509_36146} {RNA1310_74878} {RNA815_9852.1}
2. MligTC455_06991 81 1.69 Mlig455_015692, Mlig455_062493

Neo: -

Age: -

Region-enriched R2: 3.583/0.01832

 0.984 0.984 - - - - -

Mlig455_015692 {REF} {Length: 1595} {RNA1310_41614} {RNA815_59773}

Mlig455_062493 {REF} {Length: 1381} {RNA1310_41614} {RNA815_59773}
3. MligTC455_37811 192 3.99 Mlig455_010190, Mlig455_058688

Neo: -

Age: Down-Up-Down

 0.969 0.969 - - - - -

Mlig455_010190 {REF} {Length: 2948} {Smed: dd_Smed_v6_62611_0_1, dd_Smed_v6_62611_0_1, [RH, Score=71.6, Expect=3e-15]} {RNA1509_46223} {RNA1310_14882} {RNA815_30586}

Mlig455_058688 {REF} {Length: 3085} {Smed: dd_Smed_v6_62611_0_1, dd_Smed_v6_62611_0_1, [RH, Score=71.6, Expect=3e-15]} {RNA1509_46223} {RNA1310_14882} {RNA815_30586}
4. MligTC455_34279 55 1.15 Mlig455_056988

Neo: -

Age: -

 ZBTB16 0.966 0.966 - - - - - Mlig455_056988 {REF} {Length: 3794} {Pfam: C2H2-type zinc-finger domain [PF13909.8, score=57.5]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=23.3]} {Human: ENSG00000109906, ZBTB16, zinc finger and BTB domain containing 16, [Score=52.8, Expect=2e-06]; ENSG00000084093, REST, RE1 silencing transcription factor, [Score=52.0, Expect=5e-06]} {Mouse: ENSMUSG00000026135, Zfp142, zinc finger protein 142, [Score=62.4, Expect=3e-09]} {Dmel: FBgn0262160, CG9932, [RH, Score=66.6, Expect=9e-11]} {Celegans: WBGene00001824, hbl-1, Hunchback-like protein, [Score=50.4, Expect=6e-06]} {Smed: dd_Smed_v6_36433_0_1, dd_Smed_v6_36433_0_1, [Score=176, Expect=9e-48]} {RNA1509_19024} {RNA1310_45424} {RNA815_39699}
5. MligTC455_53187 15 0.31 Mlig455_051786

Neo: -

Age: -

 0.966 0.966 - - - - - Mlig455_051786 {REF} {Length: 2143} {Pfam: Globin [PF00042.24, score=45.7]} {RNA1509_20081} {RNA1310_43580} {RNA815_48130}
6. MligTC455_49338 92 1.92 Mlig455_019714

Neo: -

Age: -

Region-enriched R2: 3.827/0.02214
Region-enriched R7: 3.806/0.00162
Region-enriched R6: 3.186/0.02925

 CA7 0.965 0.965 - - - - - Mlig455_019714 {REF} {Length: 2496} {Pfam: Eukaryotic-type carbonic anhydrase [PF00194.23, score=207.6]} {Human: ENSG00000168748, CA7, carbonic anhydrase 7, [Score=157, Expect=2e-45]} {Mouse: ENSMUSG00000031883, Car7, carbonic anhydrase 7, [Score=156, Expect=3e-45]} {Dmel: FBgn0027844, CAH1, Carbonic anhydrase 1, [Score=129, Expect=8e-35]} {Celegans: WBGene00000283, cah-5, Putative carbonic anhydrase 5, [Score=89.0, Expect=6e-20]} {Smed: dd_Smed_v6_11683_0_1, dd_Smed_v6_11683_0_1, [Score=159, Expect=4e-46]} {RNA1509_43765} {RNA1310_22186, RNA1509_43765} {RNA1509_43765, RNA815_18428}
7. MligTC455_43486 59 1.22 Mlig455_056889

Neo: -

Age: Up-Down-Down

 RCVRN 0.963 0.963 - - - - - Mlig455_056889 {REF} {Length: 1808} {Pfam: EF-hand domain pair [PF13499.8, score=46.2]; EF hand [PF00036.34, score=42.1]; EF-hand domain [PF13405.8, score=40.1]; EF hand [PF13202.8, score=18.6]} {Human: ENSG00000109047, RCVRN, recoverin, [Score=51.6, Expect=4e-08]; ENSG00000138472, GUCA1C, guanylate cyclase activator 1C, [Score=50.4, Expect=1e-07]} {Mouse: ENSMUSG00000020907, Rcvrn, recoverin, [Score=48.9, Expect=2e-07]} {Smed: dd_Smed_v6_6534_0_2, dd_Smed_v6_6534_0_2, [Score=48.5, Expect=1e-07]} {RNA1509_37879} {RNA1310_35664, RNA1509_37879} {RNA1509_37879, RNA815_32400}
8. MligTC455_47244 216 4.49 Mlig455_016130

Neo: -

Age: -

Region-enriched R2: 3.391/0.02151
Region-enriched R6: 2.922/0.03099

 0.963 0.963 - - - - - Mlig455_016130 {REF} {Length: 3312} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=27.9]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=20.5]} {Smed: dd_Smed_v6_24733_0_1, dd_Smed_v6_24733_0_1, [RH, Score=231, Expect=1e-71]} {RNA1509_41111} {RNA1310_18481.1} {RNA815_10445}
9. MligTC455_10351 12 0.25 Mlig455_058454

Neo: -

Age: -

 0.959 0.959 - - - - - Mlig455_058454 {REF} {Length: 1338} {RNA1310_148920}
10. MligTC455_17579 76 1.58 Mlig455_042836, Mlig455_045854, Mlig455_045870

Neo: -

Age: -

 RNF217 0.957 0.957 - - - - -

Mlig455_042836 {REF} {Length: 3004} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=75.3]} {Human: ENSG00000146373, RNF217, ring finger protein 217, [Score=83.6, Expect=5e-16]} {Mouse: ENSMUSG00000063760, Rnf217, ring finger protein 217, [Score=83.2, Expect=4e-16]} {Dmel: FBgn0036082, CG12362, [Score=57.0, Expect=4e-08]} {Celegans: WBGene00020462, T12E12.1, Potential E3 ubiquitin-protein ligase ariadne-2, [Score=57.0, Expect=4e-08]} {Smed: dd_Smed_v6_7986_0_1, dd_Smed_v6_7986_0_1, [Score=61.2, Expect=1e-09]} {RNA1310_42946} {RNA815_24345}

Mlig455_045854 {REF} {Length: 3004} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=74.7]} {Human: ENSG00000146373, RNF217, ring finger protein 217, [Score=83.2, Expect=5e-16]} {Mouse: ENSMUSG00000063760, Rnf217, ring finger protein 217, [Score=83.2, Expect=4e-16]} {Dmel: FBgn0036082, CG12362, [Score=57.4, Expect=3e-08]} {Celegans: WBGene00020462, T12E12.1, Potential E3 ubiquitin-protein ligase ariadne-2, [Score=57.8, Expect=2e-08]} {Smed: dd_Smed_v6_7986_0_1, dd_Smed_v6_7986_0_1, [Score=61.2, Expect=1e-09]} {RNA1310_42946} {RNA815_24345}

Mlig455_045870 {REF} {Length: 3004} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=74.9]} {Human: ENSG00000146373, RNF217, ring finger protein 217, [Score=83.2, Expect=5e-16]} {Mouse: ENSMUSG00000063760, Rnf217, ring finger protein 217, [Score=83.2, Expect=4e-16]} {Dmel: FBgn0036082, CG12362, [Score=57.4, Expect=3e-08]} {Celegans: WBGene00020462, T12E12.1, Potential E3 ubiquitin-protein ligase ariadne-2, [Score=57.0, Expect=4e-08]} {Smed: dd_Smed_v6_7986_0_1, dd_Smed_v6_7986_0_1, [Score=61.2, Expect=1e-09]} {RNA1310_42946} {RNA815_24345}
11. MligTC455_39632 71 1.48 Mlig455_039338

Neo: -

Age: Up-Down-Down

Region-enriched R2: 4.404/0.02299

 APBA1 0.953 0.953 - - - - - Mlig455_039338 {REF} {Length: 5781} {Pfam: Phosphotyrosine interaction domain (PTB/PID) [PF00640.25, score=122.8]; PDZ domain [PF00595.26, score=87.0]; PDZ domain [PF17820.3, score=50.7]} {Human: ENSG00000107282, APBA1, amyloid beta precursor protein binding family A member 1, [RH, Score=476, Expect=5e-157]; ENSG00000276497, APBA1, amyloid beta precursor protein binding family A member 1, [RH, Score=474, Expect=2e-161]; ENSG00000276495, APBA2, amyloid beta precursor protein binding family A member 2, [RH, Score=474, Expect=3e-157]; ENSG00000034053, APBA2, amyloid beta precursor protein binding family A member 2, [RH, Score=474, Expect=3e-157]} {Mouse: ENSMUSG00000030519, Apba2, amyloid beta (A4) precursor protein-binding, family A, member 2, [RH, Score=476, Expect=3e-158]; ENSMUSG00000024897, Apba1, amyloid beta (A4) precursor protein binding, family A, member 1, [RH, Score=475, Expect=2e-156]} {Dmel: FBgn0052677, X11Lbeta, [Score=532, Expect=2e-168]} {Celegans: WBGene00002999, lin-10, [Score=519, Expect=1e-172]} {Smed: dd_Smed_v6_2836_0_2, dd_Smed_v6_2836_0_2, [Score=550, Expect=0.0]} {RNA1509_43941, RNA1509_55204} {RNA1310_18864.1, RNA1509_43941} {RNA1509_43941, RNA815_11653}
12. MligTC455_21174 52 1.08 Mlig455_063747

Neo: -

Age: -

 0.952 0.952 - - - - - Mlig455_063747 {REF} {Length: 1497} {RNA1310_66384} {RNA815_34655}
13. MligTC455_27801 113 2.36 Mlig455_033476

Neo: -

Age: -

 PLCH2 0.952 0.952 - - - - - Mlig455_033476 {REF} {Length: 8788} {Pfam: Phosphatidylinositol-specific phospholipase C, X domain [PF00388.21, score=200.3]; Phosphatidylinositol-specific phospholipase C, Y domain [PF00387.21, score=106.2]; RasGEF domain [PF00617.21, score=54.0]; Ras association (RalGDS/AF-6) domain [PF00788.25, score=39.7]; C2 domain [PF00168.32, score=29.3]} {Human: ENSG00000149527, PLCH2, phospholipase C eta 2, [Score=326, Expect=4e-90]; ENSG00000276429, PLCH2, phospholipase C eta 2, [Score=326, Expect=4e-90]; ENSG00000101333, PLCB4, phospholipase C beta 4, [Score=325, Expect=1e-90]} {Mouse: ENSMUSG00000024998, Plce1, phospholipase C, epsilon 1, [RH, Score=282, Expect=1e-75]} {Dmel: FBgn0003416, sl, small wing, [Score=164, Expect=3e-40]} {Celegans: WBGene00004036, plc-1, 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1, [Score=432, Expect=6e-123]} {Smed: dd_Smed_v6_9716_1_1, dd_Smed_v6_9716_1_1, [Score=752, Expect=0.0]} {RNA1509_26054} {RNA1310_1143.2} {RNA815_10233}
14. MligTC455_28725 281 5.84 Mlig455_057062

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.361

Region-enriched R2: 3.359/0.00096

 ANK1 0.951 0.951 - - - - - Mlig455_057062 {REF} {Length: 9594} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=657.0]; Ankyrin repeats (many copies) [PF13637.8, score=564.6]; Ankyrin repeats (many copies) [PF13857.8, score=451.3]; Ankyrin repeat [PF13606.8, score=367.3]; Ankyrin repeat [PF00023.32, score=184.4]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=148, Expect=9e-35]; ENSG00000145362, ANK2, ankyrin 2, [Score=147, Expect=1e-34]; ENSG00000151150, ANK3, ankyrin 3, [Score=146, Expect=4e-34]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=149, Expect=1e-35]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=149, Expect=4e-35]; ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=145, Expect=7e-34]; ENSMUSG00000014496, Ankrd28, ankyrin repeat domain 28, [Score=144, Expect=8e-34]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=149, Expect=5e-35]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=135, Expect=2e-31]} {Smed: dd_Smed_v6_5303_0_2, dd_Smed_v6_5303_0_2, [Score=172, Expect=3e-43]} {RNA1509_11517} {RNA1310_203} {RNA815_6981}
15. MligTC455_26832 211 4.39 Mlig455_000690

Neo: -

Age: Down-Up-Down

 ANK3 0.95 0.950 - - - - - Mlig455_000690 {REF} {Length: 2225} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=184.0]; Ankyrin repeats (many copies) [PF13637.8, score=128.0]; Ankyrin repeat [PF00023.32, score=96.2]; Ankyrin repeats (many copies) [PF13857.8, score=94.5]; Ankyrin repeat [PF13606.8, score=92.4]; SOCS box [PF07525.18, score=29.0]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=120, Expect=6e-28]; ENSG00000135299, ANKRD6, ankyrin repeat domain 6, [Score=119, Expect=7e-28]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=122, Expect=1e-28]; ENSMUSG00000040183, Ankrd6, ankyrin repeat domain 6, [Score=122, Expect=6e-29]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=121, Expect=1e-28]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=97.4, Expect=6e-21]} {Smed: dd_Smed_v6_17293_0_1, dd_Smed_v6_17293_0_1, [RH, Score=549, Expect=0.0]} {RNA1509_43489} {RNA1310_16486.1} {RNA815_13229}
16. MligTC455_48568 56 1.18 Mlig455_066807

Neo: -

Age: -

 0.95 0.950 - - - - - Mlig455_066807 {REF} {Length: 1749} {NoTransDecoderORF} {RNA1310_59259}
17. MligTC455_51276 83 1.74 Mlig455_014757, Mlig455_014817

Neo: -

Age: Down-Up-Down

 CTGF 0.95 0.950 - - - - -

Mlig455_014757 {REF} {Length: 2922} {Pfam: CCN3 Nov like TSP1 domain [PF19035.2, score=54.0]; Insulin-like growth factor binding protein [PF00219.20, score=36.3]; von Willebrand factor type C domain [PF00093.20, score=24.9]} {Human: ENSG00000118523, CTGF, connective tissue growth factor, [RH, Score=191, Expect=6e-57]} {Mouse: ENSMUSG00000019997, Ctgf, connective tissue growth factor, [RH, Score=182, Expect=1e-53]; ENSMUSG00000005124, Wisp1, WNT1 inducible signaling pathway protein 1, [RH, Score=180, Expect=9e-53]; ENSMUSG00000028195, Cyr61, cysteine rich protein 61, [RH, Score=179, Expect=2e-52]} {Dmel: FBgn0052183, Ccn, [RH, Score=73.9, Expect=4e-14]} {Smed: dd_Smed_v6_18465_0_1, dd_Smed_v6_18465_0_1, [RH, Score=152, Expect=2e-42]} {RNA1310_28561} {RNA815_18173}

Mlig455_014817 {REF} {Length: 2230} {Pfam: CCN3 Nov like TSP1 domain [PF19035.2, score=54.1]; Insulin-like growth factor binding protein [PF00219.20, score=36.3]; von Willebrand factor type C domain [PF00093.20, score=24.9]} {Human: ENSG00000118523, CTGF, connective tissue growth factor, [RH, Score=189, Expect=3e-56]} {Mouse: ENSMUSG00000019997, Ctgf, connective tissue growth factor, [RH, Score=180, Expect=4e-53]; ENSMUSG00000005124, Wisp1, WNT1 inducible signaling pathway protein 1, [RH, Score=178, Expect=3e-52]; ENSMUSG00000028195, Cyr61, cysteine rich protein 61, [RH, Score=176, Expect=2e-51]} {Dmel: FBgn0052183, Ccn, [RH, Score=74.7, Expect=2e-14]} {Smed: dd_Smed_v6_18465_0_1, dd_Smed_v6_18465_0_1, [RH, Score=150, Expect=5e-42]} {RNA1310_28561} {RNA815_18173}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA