M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_15470

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_15470 321 6.69 Mlig455_050480

Neo: -

Age: Down-Up-Up

 Mlig455_050480 {REF} {Length: 1038} {RNA1310_40166}

Cumulative graph for MligTC455_15470

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.527 2.934 0.66005 1.00000
RegionR2 -0.481 2.934 0.38038 0.77522
RegionR3 -0.061 2.934 0.89767 1.00000
RegionR4 0.327 2.934 0.53402 0.85726
RegionR5 -0.182 2.934 0.68308 1.00000
RegionR6 -1.202 2.934 0.03559 0.35172
RegionR7 0.3 2.934 0.63147 1.00000
RegionR8 0.772 2.934 0.26930 0.89207

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.082 2.934 0.95498 1.00000
RegenerationR2 0.539 2.934 0.23863 0.68653
RegenerationR3 0.517 2.934 0.30589 0.73676
RegenerationR4 0.603 2.934 0.23073 0.67967
RegenerationR5 -0.014 2.934 0.98050 1.00000
RegenerationR6 1.374 2.934 0.02971 0.21514
RegenerationBL -1.329 2.934 0.11752 0.40577
RegenerationTP -0.037 2.934 0.95342 1.00000


Genes with expression patterns similar to MligTC455_15470

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_15470 321 6.69 Mlig455_050480

Neo: -

Age: Down-Up-Up

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_050480 {REF} {Length: 1038} {RNA1310_40166}
2. MligTC455_21043 200 4.16 Mlig455_005970

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.437

 2.578 - - 0.965 0.735 0.878 - Mlig455_005970 {REF} {Length: 2137} {RNA1509_55141} {RNA1310_17966} {RNA815_4985.1}
3. MligTC455_19071 245 5.1 Mlig455_015327, Mlig455_015370

Neo: -

Age: logFC(26M/2M)=-1.030

 1.893 - - 0.956 - 0.937 -

Mlig455_015327 {REF} {Length: 1144} {RNA1509_45342} {RNA1310_18407} {RNA815_30771}

Mlig455_015370 {REF} {Length: 1190} {RNA1509_45342} {RNA1310_18407} {RNA815_30771}
4. MligTC455_29698 153 3.19 Mlig455_038104

Neo: -

Age: logFC(26M/2M)=-0.330

 ANKRD17 1.842 - - 0.952 - 0.890 - Mlig455_038104 {REF} {Length: 7732} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=444.0]; Ankyrin repeats (many copies) [PF13637.8, score=254.7]; Ankyrin repeats (many copies) [PF13857.8, score=146.5]; Ankyrin repeat [PF13606.8, score=141.2]; Transcription factor BRX N-terminal domain [PF13713.8, score=129.7]; Ankyrin repeat [PF00023.32, score=103.7]; Domain of unknown function (DUF4476) [PF14771.8, score=54.5]; Mab-21 protein [PF03281.16, score=36.7]; HEAT repeats [PF13646.8, score=20.0]; Protein of unknown function (DUF3307) [PF11750.10, score=18.9]} {Human: ENSG00000132466, ANKRD17, ankyrin repeat domain 17, [Score=167, Expect=1e-40]} {Mouse: ENSMUSG00000055204, Ankrd17, ankyrin repeat domain 17, [Score=166, Expect=2e-40]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=114, Expect=7e-25]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=120, Expect=8e-27]} {Smed: dd_Smed_v6_5303_0_2, dd_Smed_v6_5303_0_2, [Score=160, Expect=2e-39]} {RNA1509_27730, RNA1509_55013} {RNA1310_21755.1, RNA1509_55013} {RNA1509_55013, RNA815_2426.1}
5. MligTC455_19194 403 8.39 Mlig455_007445

Neo: -

Age: Up-Down-Down

 BFAR 1.703 - - - 0.751 0.952 - Mlig455_007445 {REF} {Length: 4108} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=31.1]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=30.1]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=30.0]; zinc finger of C3HC4-type, RING [PF15227.8, score=29.7]; RING-type zinc-finger [PF13445.8, score=29.4]; Ring finger domain [PF13639.8, score=27.0]; zinc-RING finger domain [PF14634.8, score=25.5]; Prokaryotic RING finger family 4 [PF14447.8, score=22.2]; RING-H2 zinc finger domain [PF12678.9, score=19.9]} {Human: ENSG00000275618, BFAR, bifunctional apoptosis regulator, [RH, Score=48.9, Expect=7e-07]; ENSG00000103429, BFAR, bifunctional apoptosis regulator, [RH, Score=48.9, Expect=7e-07]} {Mouse: ENSMUSG00000022684, Bfar, bifunctional apoptosis regulator, [RH, Score=52.8, Expect=2e-08]; ENSMUSG00000057596, Trim30d, tripartite motif-containing 30D, [RH, Score=50.8, Expect=2e-07]} {Smed: dd_Smed_v6_10019_0_1, dd_Smed_v6_10019_0_1, [Score=46.2, Expect=2e-06]} {RNA1509_14967, RNA1509_23909, RNA1509_40881, RNA1509_45941, RNA1509_53684} {RNA1310_39360, RNA1509_14967, RNA1509_23909, RNA1509_40881, RNA1509_45941, RNA1509_53684} {RNA1509_14967, RNA1509_23909, RNA1509_40881, RNA1509_45941, RNA1509_53684, RNA815_20181}
6. MligTC455_18623 381 7.95 Mlig455_008343

Neo: -

Age: -

Region-enriched R2: 1.919/0.03070

 SPATS1 0.97 - - 0.970 - - - Mlig455_008343 {REF} {Length: 1483} {TRANSSPLICED} {Pfam: Spermatogenesis-associated serine-rich protein 1 [PF15160.8, score=71.5]} {Human: ENSG00000249481, SPATS1, spermatogenesis associated serine rich 1, [RH, Score=74.3, Expect=7e-15]} {Mouse: ENSMUSG00000023935, Spats1, spermatogenesis associated, serine-rich 1, [RH, Score=73.2, Expect=9e-15]} {Smed: dd_Smed_v6_8305_0_1, dd_Smed_v6_8305_0_1, [RH, Score=210, Expect=8e-68]} {RNA1509_15481} {RNA1310_26555, RNA1509_15481} {RNA1509_15481, RNA815_13979}
7. MligTC455_43343 2106 43.87 Mlig455_027410

Neo: -

Age: -

Regeneration-downregulated BL: -2.745

Regeneration-depleted BL: -2.745

 0.962 - - - - 0.962 - Mlig455_027410 {REF} {Length: 1151} {RNA1509_13196} {RNA1310_57327, RNA1509_13196} {RNA1509_13196, RNA815_28247}
8. MligTC455_54261 134 2.8 Mlig455_059557

Neo: -

Age: Up-Down-Down

 SLC27A4 0.961 - - - - 0.961 - Mlig455_059557 {REF} {Length: 3920} {TRANSSPLICED} {Pfam: AMP-binding enzyme [PF00501.30, score=240.8]; AMP-binding enzyme C-terminal domain [PF13193.8, score=30.4]} {Human: ENSG00000167114, SLC27A4, solute carrier family 27 member 4, [RH, Score=640, Expect=0.0]; ENSG00000130304, SLC27A1, solute carrier family 27 member 1, [RH, Score=613, Expect=0.0]} {Mouse: ENSMUSG00000059316, Slc27a4, solute carrier family 27 (fatty acid transporter), member 4, [RH, Score=627, Expect=0.0]; ENSMUSG00000031808, Slc27a1, solute carrier family 27 (fatty acid transporter), member 1, [RH, Score=620, Expect=0.0]} {Dmel: FBgn0267828, Fatp, Fatty acid (long chain) transport protein, [RH, Score=592, Expect=0.0]} {Celegans: WBGene00017012, acs-22, Fatty Acid CoA Synthetase family, [RH, Score=494, Expect=1e-167]} {Smed: dd_Smed_v6_4057_0_1, dd_Smed_v6_4057_0_1, [RH, Score=635, Expect=0.0]} {RNA1509_18148} {RNA1310_5176, RNA1509_18148} {RNA1509_18148, RNA815_3662}
9. MligTC455_19642 697 14.51 Mlig455_008581

Neo: -

Age: -

 CDKAL1 0.96 - - 0.960 - - - Mlig455_008581 {REF} {Length: 2592} {TRANSSPLICED} {Pfam: Uncharacterized protein family UPF0004 [PF00919.22, score=70.7]; Radical SAM superfamily [PF04055.23, score=52.5]; TRAM domain [PF01938.22, score=22.3]} {Human: ENSG00000145996, CDKAL1, CDK5 regulatory subunit associated protein 1 like 1, [RH, Score=585, Expect=0.0]} {Mouse: ENSMUSG00000006191, Cdkal1, CDK5 regulatory subunit associated protein 1-like 1, [RH, Score=574, Expect=0.0]} {Dmel: FBgn0034214, CG6550, [RH, Score=594, Expect=0.0]} {Celegans: WBGene00022363, Y92H12BL.1, Threonylcarbamoyladenosine tRNA methylthiotransferase, [RH, Score=389, Expect=5e-131]} {Smed: dd_Smed_v6_2358_0_1, dd_Smed_v6_2358_0_1, [RH, Score=558, Expect=0.0]} {RNA1509_38379, RNA1509_55471, RNA1509_8176} {RNA1310_6972.2, RNA1509_38379, RNA1509_55471, RNA1509_8176} {RNA1509_38379, RNA1509_55471, RNA1509_8176, RNA815_7659}
10. MligTC455_54021 1302 27.12 Mlig455_011593, Mlig455_050000

Neo: -

Age: -

 PUM2 0.959 - - - - 0.959 -

Mlig455_011593 {REF} {Length: 5544} {TRANSSPLICED} {Pfam: Pumilio-family RNA binding repeat [PF00806.21, score=296.7]; CPL (NUC119) domain [PF08144.13, score=19.8]; Protein of unknown function (DUF445) [PF04286.14, score=19.7]} {Human: ENSG00000055917, PUM2, pumilio RNA binding family member 2, [RH, Score=531, Expect=5e-174]; ENSG00000134644, PUM1, pumilio RNA binding family member 1, [RH, Score=530, Expect=2e-173]} {Mouse: ENSMUSG00000020594, Pum2, pumilio RNA-binding family member 2, [RH, Score=531, Expect=1e-173]; ENSMUSG00000106966, Pum1, pumilio RNA-binding family member 1, [RH, Score=526, Expect=3e-172]; ENSMUSG00000028580, Pum1, pumilio RNA-binding family member 1, [RH, Score=526, Expect=3e-172]} {Dmel: FBgn0003165, pum, pumilio, [RH, Score=511, Expect=5e-161]} {Celegans: WBGene00004245, puf-9, PUF (Pumilio/FBF) domain-containing, [RH, Score=388, Expect=1e-122]} {Smed: dd_Smed_v6_1677_0_1, dd_Smed_v6_1677_0_1, [RH, Score=504, Expect=4e-164]} {RNA1509_24495, RNA1509_3668, RNA1509_59306} {RNA1310_1864.1, RNA1509_24495, RNA1509_59306} {RNA1509_24495, RNA1509_59306, RNA815_1730.2}

Mlig455_050000 {REF} {Length: 5309} {TRANSSPLICED} {Pfam: Pumilio-family RNA binding repeat [PF00806.21, score=296.4]; Protein of unknown function (DUF445) [PF04286.14, score=19.8]; CPL (NUC119) domain [PF08144.13, score=19.7]} {Human: ENSG00000055917, PUM2, pumilio RNA binding family member 2, [RH, Score=531, Expect=4e-173]; ENSG00000134644, PUM1, pumilio RNA binding family member 1, [RH, Score=530, Expect=3e-171]} {Mouse: ENSMUSG00000020594, Pum2, pumilio RNA-binding family member 2, [RH, Score=531, Expect=2e-173]; ENSMUSG00000028580, Pum1, pumilio RNA-binding family member 1, [RH, Score=526, Expect=5e-172]; ENSMUSG00000106966, Pum1, pumilio RNA-binding family member 1, [RH, Score=526, Expect=5e-172]} {Dmel: FBgn0003165, pum, pumilio, [RH, Score=511, Expect=5e-161]} {Celegans: WBGene00004245, puf-9, PUF (Pumilio/FBF) domain-containing, [RH, Score=388, Expect=2e-122]} {Smed: dd_Smed_v6_1677_0_1, dd_Smed_v6_1677_0_1, [RH, Score=504, Expect=3e-164]} {RNA1509_21797, RNA1509_28076, RNA1509_33435, RNA1509_3668, RNA1509_57796} {RNA1310_1864.1, RNA1509_21797, RNA1509_28076, RNA1509_33435, RNA1509_3668, RNA1509_57796} {RNA1509_21797, RNA1509_28076, RNA1509_33435, RNA1509_3668, RNA1509_57796, RNA815_1730.1}
11. MligTC455_49780 780 16.24 Mlig455_053889

Neo: -

Age: Down-Up-Down

 TAX1BP3 0.957 - - 0.957 - - - Mlig455_053889 {REF} {Length: 1679} {TRANSSPLICED} {Pfam: PDZ domain [PF00595.26, score=47.9]; PDZ domain [PF17820.3, score=42.3]; PDZ domain [PF13180.8, score=29.5]} {Human: ENSG00000213977, TAX1BP3, Tax1 binding protein 3, [RH, Score=69.7, Expect=1e-15]} {Mouse: ENSMUSG00000040158, Tax1bp3, Tax1 (human T cell leukemia virus type I) binding protein 3, [RH, Score=69.7, Expect=9e-16]} {Dmel: FBgn0035148, CG3402, [RH, Score=88.2, Expect=4e-23]} {Celegans: WBGene00016678, C45G9.7, [RH, Score=92.0, Expect=1e-24]} {Smed: dd_Smed_v6_7732_0_1, dd_Smed_v6_7732_0_1, [Score=47.8, Expect=4e-07]} {RNA1509_46994, RNA1509_56445} {RNA1310_49427.1, RNA1509_56445} {RNA1509_56445, RNA815_26268.2}
12. MligTC455_40817 463 9.65 Mlig455_013525, Mlig455_061407

Neo: -

Age: -

 0.951 - - 0.951 - - -

Mlig455_013525 {REF} {Length: 1672} {RNA1509_18365} {RNA1310_18284.1} {RNA815_7044.1}

Mlig455_061407 {REF} {Length: 1668} {TRANSSPLICED} {RNA1509_18365} {RNA1310_18284.1, RNA1509_18365} {RNA1509_18365, RNA815_7044.1}
13. MligTC455_45822 733 15.27 Mlig455_030111, Mlig455_030180

Neo: -

Age: -

Region-enriched R4: 2.554/0.00328

 0.951 - - - - 0.951 -

Mlig455_030111 {REF} {Length: 2896} {TRANSSPLICED} {Pfam: Mitotic-spindle organizing gamma-tubulin ring associated [PF12926.9, score=29.8]} {RNA1509_27378, RNA1509_41692} {RNA1310_18834, RNA1509_41692} {RNA1509_41692, RNA815_11733}

Mlig455_030180 {REF} {Length: 2897} {TRANSSPLICED} {Pfam: Mitotic-spindle organizing gamma-tubulin ring associated [PF12926.9, score=29.8]} {RNA1509_27378, RNA1509_49391} {RNA1310_18834, RNA1509_49391} {RNA1509_49391, RNA815_11733}
14. MligTC455_53578 83 1.72 Mlig455_014070

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_014070 {REF} {Length: 722} {NoTransDecoderORF} {RNA1310_59022.1} {RNA815_38800}
15. MligTC455_36858 366 7.63 Mlig455_045743

Neo: -

Age: -

 SECISBP2L 0.95 - - - - 0.950 - Mlig455_045743 {REF} {Length: 3339} {TRANSSPLICED} {Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=50.0]} {Human: ENSG00000138593, SECISBP2L, SECIS binding protein 2 like, [RH, Score=188, Expect=5e-49]} {Mouse: ENSMUSG00000035093, Secisbp2l, SECIS binding protein 2-like, [RH, Score=186, Expect=2e-48]; ENSMUSG00000035139, Secisbp2, SECIS binding protein 2, [RH, Score=178, Expect=4e-46]} {Dmel: FBgn0087039, Sbp2, SECIS-binding protein 2, [RH, Score=131, Expect=2e-33]} {Smed: dd_Smed_v6_7771_0_1, dd_Smed_v6_7771_0_1, [RH, Score=144, Expect=1e-35]} {RNA1509_14647} {RNA1310_7091.1, RNA1509_14647} {RNA1509_14647, RNA815_18856}
16. MligTC455_49842 391 8.14 Mlig455_030095

Neo: -

Age: Down-Up-Up

 0.95 - - - - 0.950 - Mlig455_030095 {REF} {Length: 2464} {TRANSSPLICED} {RNA1509_54601} {RNA1310_30894.2, RNA1509_54601} {RNA1509_54601, RNA815_35555}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA