M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_15511

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_15511 2 0.05 Mlig455_030265

Neo: -

Age: -

 HSPG2 Mlig455_030265 {REF} {Length: 733} {Pfam: Immunoglobulin domain [PF13927.8, score=61.2]; Low-density lipoprotein receptor domain class A [PF00057.20, score=53.9]; Immunoglobulin domain [PF13895.8, score=48.6]; Immunoglobulin domain [PF00047.27, score=40.6]; Immunoglobulin I-set domain [PF07679.18, score=35.7]; Immunoglobulin V-set domain [PF07686.19, score=28.3]} {Human: ENSG00000142798, HSPG2, heparan sulfate proteoglycan 2, [Score=112, Expect=1e-24]} {Mouse: ENSMUSG00000028763, Hspg2, perlecan (heparan sulfate proteoglycan 2), [Score=113, Expect=8e-25]} {Dmel: FBgn0284408, trol, terribly reduced optic lobes, [Score=107, Expect=2e-23]} {Celegans: WBGene00006787, unc-52, Basement membrane proteoglycan, [Score=89.4, Expect=9e-18]} {Smed: dd_Smed_v6_1054_0_1, dd_Smed_v6_1054_0_1, [Score=130, Expect=6e-31]} {RNA1509_524} {RNA1310_4373} {RNA815_1325}

Cumulative graph for MligTC455_15511

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_15511

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_15511 2 0.05 Mlig455_030265

Neo: -

Age: -

 HSPG2 1 - - - - 1.000 - Mlig455_030265 {REF} {Length: 733} {Pfam: Immunoglobulin domain [PF13927.8, score=61.2]; Low-density lipoprotein receptor domain class A [PF00057.20, score=53.9]; Immunoglobulin domain [PF13895.8, score=48.6]; Immunoglobulin domain [PF00047.27, score=40.6]; Immunoglobulin I-set domain [PF07679.18, score=35.7]; Immunoglobulin V-set domain [PF07686.19, score=28.3]} {Human: ENSG00000142798, HSPG2, heparan sulfate proteoglycan 2, [Score=112, Expect=1e-24]} {Mouse: ENSMUSG00000028763, Hspg2, perlecan (heparan sulfate proteoglycan 2), [Score=113, Expect=8e-25]} {Dmel: FBgn0284408, trol, terribly reduced optic lobes, [Score=107, Expect=2e-23]} {Celegans: WBGene00006787, unc-52, Basement membrane proteoglycan, [Score=89.4, Expect=9e-18]} {Smed: dd_Smed_v6_1054_0_1, dd_Smed_v6_1054_0_1, [Score=130, Expect=6e-31]} {RNA1509_524} {RNA1310_4373} {RNA815_1325}
2. MligTC455_22927 10 0.21 Mlig455_002602

Neo: -

Age: -

 0.984 - - - - 0.984 - Mlig455_002602 {REF} {Length: 1183} {RNA1509_17921} {RNA1310_13833.1} {RNA815_29396}
3. MligTC455_32156 3 0.07 Mlig455_026707

Neo: -

Age: Up-Down-Down

 0.984 - - - - 0.984 - Mlig455_026707 {REF} {Length: 4280} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=37.7]} {RNA1509_42976} {RNA1310_10512} {RNA815_26150}
4. MligTC455_40869 23 0.49 Mlig455_008837

Neo: Germline

Age: Up-Up-Down

 0.981 - - - - 0.981 - Mlig455_008837 {REF} {Length: 1190} {RNA1509_5212} {RNA1310_44372} {RNA815_11280.2}
5. MligTC455_49905 16 0.33 Mlig455_012714

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_012714 {REF} {Length: 993} {RNA1310_52533} {RNA815_32753}
6. MligTC455_07450 9 0.18 Mlig455_001816, Mlig455_001824

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=2.840

 SLC34A1, SLC34A2 0.979 - - - - 0.979 -

Mlig455_001816 {REF} {Length: 1819} {Pfam: Na+/Pi-cotransporter [PF02690.17, score=117.0]} {Human: ENSG00000157765, SLC34A2, solute carrier family 34 member 2, [RH, Score=397, Expect=4e-130]; ENSG00000131183, SLC34A1, solute carrier family 34 member 1, [RH, Score=395, Expect=3e-130]} {Mouse: ENSMUSG00000021490, Slc34a1, solute carrier family 34 (sodium phosphate), member 1, [RH, Score=405, Expect=3e-134]; ENSMUSG00000029188, Slc34a2, solute carrier family 34 (sodium phosphate), member 2, [RH, Score=388, Expect=1e-126]} {Celegans: WBGene00022767, ZK563.2, [RH, Score=242, Expect=2e-72]} {RNA1509_4966} {RNA1310_9213} {RNA815_3359}

Mlig455_001824 {REF} {Length: 1817} {Pfam: Na+/Pi-cotransporter [PF02690.17, score=79.1]} {Human: ENSG00000131183, SLC34A1, solute carrier family 34 member 1, [RH, Score=197, Expect=2e-60]} {Mouse: ENSMUSG00000021490, Slc34a1, solute carrier family 34 (sodium phosphate), member 1, [Score=207, Expect=7e-62]; ENSMUSG00000029188, Slc34a2, solute carrier family 34 (sodium phosphate), member 2, [Score=201, Expect=3e-59]} {Celegans: WBGene00022767, ZK563.2, [Score=108, Expect=3e-26]} {RNA1509_4966} {RNA1310_9213} {RNA815_3359}
7. MligTC455_12222 52 1.07 Mlig455_026926

Neo: Int S/G2/M

Age: -

Region-enriched R5: 3.013/0.04324

 0.979 - - - - 0.979 - Mlig455_026926 {REF} {Length: 1089} {RNA1509_46037} {RNA1310_76532} {RNA815_40034}
8. MligTC455_15214 67 1.4 Mlig455_054254

Neo: Int S/G2/M

Age: Up-Up-Down, logFC(26M/2M)=1.458

Region-enriched R4: 4.867/0.00000

 TPMT 0.976 - - - - 0.976 - Mlig455_054254 {REF} {Length: 1271} {Pfam: Thiopurine S-methyltransferase (TPMT) [PF05724.13, score=80.4]} {Human: ENSG00000137364, TPMT, thiopurine S-methyltransferase, [Score=75.1, Expect=5e-15]} {Mouse: ENSMUSG00000021376, Tpmt, thiopurine methyltransferase, [Score=63.5, Expect=3e-11]} {Smed: dd_Smed_v6_1495_0_1, dd_Smed_v6_1495_0_1, [RH, Score=78.2, Expect=1e-16]} {RNA1509_43164} {RNA1310_29080} {RNA815_13368}
9. MligTC455_36018 16 0.34 Mlig455_030116, Mlig455_065736

Neo: -

Age: Down-Up-Down

 0.976 - - - - 0.976 -

Mlig455_030116 {REF} {Length: 1976} {Smed: dd_Smed_v6_9908_0_1, dd_Smed_v6_9908_0_1, [RH, Score=118, Expect=1e-30]} {RNA1310_14002} {RNA815_23565}

Mlig455_065736 {REF} {Length: 2426} {Smed: dd_Smed_v6_9908_0_1, dd_Smed_v6_9908_0_1, [RH, Score=118, Expect=1e-30]} {RNA1310_14002} {RNA815_23565}
10. MligTC455_13814 28 0.58 Mlig455_056136

Neo: Int S/G2/M

Age: -

Region-enriched R4: 5.042/0.00008

 0.975 - - - - 0.975 - Mlig455_056136 {REF} {Length: 1151} {RNA1310_29105} {RNA815_44614}
11. MligTC455_52222 72 1.51 Mlig455_019106

Neo: Germline

Age: -

 0.972 - - - - 0.972 - Mlig455_019106 {REF} {Length: 1023} {RNA1509_15451} {RNA1310_25391.1} {RNA815_27743}
12. MligTC455_01227 13 0.27 Mlig455_009929

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_009929 {REF} {Length: 963} {RNA1509_43445} {RNA1310_26074.1} {RNA815_12069.1}
13. MligTC455_04064 58 1.21 Mlig455_032788

Neo: Germline

Age: -

 0.96 - - - - 0.960 - Mlig455_032788 {REF} {Length: 764} {NoTransDecoderORF} {RNA1310_95655}
14. MligTC455_08720 7 0.14 Mlig455_069287

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_069287 {REF} {Length: 364} {NoTransDecoderORF}
15. MligTC455_09249 11 0.24 Mlig455_029919

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_029919 {REF} {Length: 843} {RNA1509_56557} {RNA1310_78326.2} {RNA815_36022}
16. MligTC455_14137 29 0.6 Mlig455_002627, Mlig455_048881, Mlig455_048890

Neo: Germline

Age: -

 0.96 - - - - 0.960 -

Mlig455_002627 {REF} {Length: 351} {NoTransDecoderORF} {RNA1509_55858} {RNA1310_35988}

Mlig455_048881 {REF} {Length: 236} {NoTransDecoderORF} {RNA1509_55858} {RNA1310_35988}

Mlig455_048890 {REF} {Length: 240} {NoTransDecoderORF} {RNA1509_55858} {RNA1310_35988}
17. MligTC455_04372 20 0.42 Mlig455_033371

Neo: -

Age: -

 GVQW3 0.959 - - - - 0.959 - Mlig455_033371 {REF} {Length: 1286} {Pfam: Homeodomain-like domain [PF13565.8, score=38.6]; HTH domain in Mos1 transposase [PF17906.3, score=26.6]} {Human: ENSG00000179240, GVQW3, GVQW motif containing 3, [Score=85.5, Expect=2e-20]} {Smed: dd_Smed_v6_14929_0_1, dd_Smed_v6_14929_0_1, [Score=59.3, Expect=7e-12]} {RNA1310_29714} {RNA815_30628}
18. MligTC455_08844 13 0.28 Mlig455_001398

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_001398 {REF} {Length: 798} {NoTransDecoderORF} {RNA1509_1271} {RNA1310_135792} {RNA815_7914.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA