M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_15638

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_15638 767 15.97 Mlig455_027208

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.719

Region-enriched R5: 1.356/0.00018

 AGXT Mlig455_027208 {REF} {Length: 1663} {TRANSSPLICED} {Pfam: Aminotransferase class-V [PF00266.21, score=132.0]; Aminotransferase class I and II [PF00155.23, score=19.2]} {Human: ENSG00000172482, AGXT, alanine--glyoxylate and serine--pyruvate aminotransferase, [RH, Score=373, Expect=4e-127]} {Mouse: ENSMUSG00000026272, Agxt, alanine-glyoxylate aminotransferase, [RH, Score=356, Expect=2e-120]} {Dmel: FBgn0014031, Spat, Serine pyruvate aminotransferase, [RH, Score=345, Expect=2e-116]} {Celegans: WBGene00011767, agxt-1, Serine--pyruvate aminotransferase, [RH, Score=356, Expect=1e-120]} {RNA1509_12679} {RNA1310_13929} {RNA815_6715}

Cumulative graph for MligTC455_15638

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.416 4.39 0.73580 1.00000
RegionR2 -0.231 4.39 0.62672 0.96839
RegionR3 0.118 4.39 0.74845 1.00000
RegionR4 0.214 4.39 0.62616 0.93527
RegionR5 1.356 4.39 0.00001 0.00018
RegionR6 0.305 4.39 0.40722 0.97654
RegionR7 -0.345 4.39 0.52819 1.00000
RegionR8 -1.001 4.39 0.18792 0.77703

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.626 4.39 0.73977 1.00000
RegenerationR2 0.351 4.39 0.32360 0.76160
RegenerationR3 0.564 4.39 0.14372 0.57110
RegenerationR4 0.565 4.39 0.15797 0.58983
RegenerationR5 0.2 4.39 0.54583 0.88364
RegenerationR6 0.348 4.39 0.37349 0.71608
RegenerationBL 0.632 4.39 0.22471 0.57380
RegenerationTP 0.809 4.39 0.17516 0.60881


Genes with expression patterns similar to MligTC455_15638

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_15638 767 15.97 Mlig455_027208

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.719

Region-enriched R5: 1.356/0.00018

 AGXT 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_027208 {REF} {Length: 1663} {TRANSSPLICED} {Pfam: Aminotransferase class-V [PF00266.21, score=132.0]; Aminotransferase class I and II [PF00155.23, score=19.2]} {Human: ENSG00000172482, AGXT, alanine--glyoxylate and serine--pyruvate aminotransferase, [RH, Score=373, Expect=4e-127]} {Mouse: ENSMUSG00000026272, Agxt, alanine-glyoxylate aminotransferase, [RH, Score=356, Expect=2e-120]} {Dmel: FBgn0014031, Spat, Serine pyruvate aminotransferase, [RH, Score=345, Expect=2e-116]} {Celegans: WBGene00011767, agxt-1, Serine--pyruvate aminotransferase, [RH, Score=356, Expect=1e-120]} {RNA1509_12679} {RNA1310_13929} {RNA815_6715}
2. MligTC455_53264 1175 24.48 Mlig455_006449

Neo: Neoblast

Age: -

Region-enriched R4: 1.510/0.00007
Region-enriched R5: 1.365/0.00000

 0.958 - - - - - 0.958 Mlig455_006449 {REF} {Length: 697} {TRANSSPLICED} {RNA1509_7692} {RNA1310_50335, RNA1509_7692} {RNA1509_7692, RNA815_25823}
3. MligTC455_48619 904 18.83 Mlig455_000207

Neo: Irradiation

Age: -

 DCAF12 0.954 - - - - 0.954 - Mlig455_000207 {REF} {Length: 2208} {TRANSSPLICED} {Human: ENSG00000198876, DCAF12, DDB1 and CUL4 associated factor 12, [RH, Score=169, Expect=3e-47]} {Mouse: ENSMUSG00000028436, Dcaf12, DDB1 and CUL4 associated factor 12, [RH, Score=170, Expect=8e-48]} {Dmel: FBgn0037980, DCAF12, DDB1 and CUL4 associated factor 12, [RH, Score=160, Expect=2e-44]} {Smed: dd_Smed_v6_13258_0_1, dd_Smed_v6_13258_0_1, [RH, Score=147, Expect=1e-39]} {RNA1509_14621, RNA1509_59071} {RNA1310_11403, RNA1509_14621, RNA1509_59071} {RNA1509_14621, RNA1509_59071, RNA815_3963}
4. MligTC455_48296 6183 128.81 Mlig455_030506

Neo: -

Age: -

 CKB 0.951 - - - - 0.951 - Mlig455_030506 {REF} {Length: 3039} {TRANSSPLICED} {Pfam: ATP:guanido phosphotransferase, C-terminal catalytic domain [PF00217.21, score=537.1]; ATP:guanido phosphotransferase, N-terminal domain [PF02807.17, score=205.9]; flt3 ligand [PF02947.16, score=19.1]} {Human: ENSG00000166165, CKB, creatine kinase B, [RH, Score=292, Expect=2e-91]} {Mouse: ENSMUSG00000001270, Ckb, creatine kinase, brain, [RH, Score=291, Expect=3e-91]; ENSMUSG00000030399, Ckm, creatine kinase, muscle, [RH, Score=284, Expect=1e-88]} {Dmel: FBgn0000116, Argk, Arginine kinase, [RH, Score=532, Expect=0.0]} {Celegans: WBGene00017975, F32B5.1, [RH, Score=423, Expect=1e-141]} {Smed: dd_Smed_v6_67158_0_1, dd_Smed_v6_67158_0_1, [RH, Score=254, Expect=4e-79]} {RNA1509_1711, RNA1509_2696} {RNA1310_20616, RNA1509_2696} {RNA1509_2696, RNA815_1372.1}
5. MligTC455_20047 1050 21.87 Mlig455_006587, Mlig455_006748

Neo: -

Age: -

Region-enriched R4: 2.085/0.00201
Region-enriched R5: 1.753/0.00225

 CASP3 0.95 - - - - - 0.950

Mlig455_006587 {REF} {Length: 2381} {TRANSSPLICED} {Pfam: Caspase domain [PF00656.24, score=117.2]} {Human: ENSG00000164305, CASP3, caspase 3, [Score=210, Expect=1e-65]; ENSG00000165806, CASP7, caspase 7, [Score=204, Expect=6e-63]} {Mouse: ENSMUSG00000031628, Casp3, caspase 3, [Score=205, Expect=8e-64]; ENSMUSG00000025076, Casp7, caspase 7, [Score=201, Expect=7e-62]} {Dmel: FBgn0010501, Dcp-1, Death caspase-1, [RH, Score=189, Expect=2e-57]} {Celegans: WBGene00000417, ced-3, Cell death protein 3 Cell death protein 3 subunit 1 Cell death protein 3 subunit 2, [Score=132, Expect=5e-36]} {Smed: dd_Smed_v6_4986_0_1, dd_Smed_v6_4986_0_1, [RH, Score=174, Expect=3e-52]} {RNA1509_21320, RNA1509_30446, RNA1509_55118} {RNA1310_15341.2, RNA1509_21320, RNA1509_30446, RNA1509_55118} {RNA1509_21320, RNA1509_30446, RNA1509_55118, RNA815_6492}

Mlig455_006748 {REF} {Length: 1773} {TRANSSPLICED} {Pfam: Caspase domain [PF00656.24, score=117.2]} {Human: ENSG00000164305, CASP3, caspase 3, [Score=210, Expect=1e-65]; ENSG00000165806, CASP7, caspase 7, [Score=204, Expect=5e-63]} {Mouse: ENSMUSG00000031628, Casp3, caspase 3, [Score=205, Expect=8e-64]; ENSMUSG00000025076, Casp7, caspase 7, [Score=201, Expect=8e-62]} {Dmel: FBgn0010501, Dcp-1, Death caspase-1, [RH, Score=189, Expect=2e-57]} {Celegans: WBGene00000417, ced-3, Cell death protein 3 Cell death protein 3 subunit 1 Cell death protein 3 subunit 2, [Score=132, Expect=4e-36]} {Smed: dd_Smed_v6_4986_0_1, dd_Smed_v6_4986_0_1, [RH, Score=174, Expect=3e-52]} {RNA1509_39221, RNA1509_55118} {RNA1310_15341.2, RNA1509_39221} {RNA1509_39221, RNA815_6492}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA