M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_15653

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_15653 416 8.67 Mlig455_016351

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.225

 PPIE Mlig455_016351 {REF} {Length: 2054} {TRANSSPLICED} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.23, score=144.7]; Zinc-finger double domain [PF13465.8, score=78.7]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=71.0]; C2H2-type zinc finger [PF13894.8, score=46.7]; Zinc finger, C2H2 type [PF00096.28, score=38.0]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=25.2]; zinc-finger of a C2HC-type [PF13913.8, score=20.2]} {Human: ENSG00000084072, PPIE, peptidylprolyl isomerase E, [RH, Score=403, Expect=2e-139]} {Mouse: ENSMUSG00000028651, Ppie, peptidylprolyl isomerase E (cyclophilin E), [Score=401, Expect=5e-139]} {Dmel: FBgn0028382, cyp33, cyclophilin-33, [Score=368, Expect=3e-126]} {Celegans: WBGene00000889, cyn-13, Peptidyl-prolyl cis-trans isomerase, [RH, Score=359, Expect=2e-122]} {Smed: dd_Smed_v6_5116_0_1, dd_Smed_v6_5116_0_1, [Score=377, Expect=3e-130]} {RNA1509_10667} {RNA1310_14090.1} {RNA815_7501}

Cumulative graph for MligTC455_15653

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.889 3.438 0.47906 1.00000
RegionR2 0.012 3.438 0.98362 1.00000
RegionR3 -0.71 3.438 0.20506 0.74508
RegionR4 0.607 3.438 0.23322 0.52717
RegionR5 0.952 3.438 0.02703 0.12012
RegionR6 0.91 3.438 0.05977 0.45916
RegionR7 -0.157 3.438 0.81233 1.00000
RegionR8 -0.725 3.438 0.40700 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.524 3.438 0.14916 0.88976
RegenerationR2 -0.364 3.438 0.49550 0.86962
RegenerationR3 0.255 3.438 0.66318 0.93436
RegenerationR4 -0.868 3.438 0.10819 0.50681
RegenerationR5 -0.001 3.438 0.99949 1.00000
RegenerationR6 -0.562 3.438 0.29710 0.64759
RegenerationBL -0.343 3.438 0.62405 0.96673
RegenerationTP 0.125 3.438 0.86985 1.00000


Genes with expression patterns similar to MligTC455_15653

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_15653 416 8.67 Mlig455_016351

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.225

 PPIE 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_016351 {REF} {Length: 2054} {TRANSSPLICED} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.23, score=144.7]; Zinc-finger double domain [PF13465.8, score=78.7]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=71.0]; C2H2-type zinc finger [PF13894.8, score=46.7]; Zinc finger, C2H2 type [PF00096.28, score=38.0]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=25.2]; zinc-finger of a C2HC-type [PF13913.8, score=20.2]} {Human: ENSG00000084072, PPIE, peptidylprolyl isomerase E, [RH, Score=403, Expect=2e-139]} {Mouse: ENSMUSG00000028651, Ppie, peptidylprolyl isomerase E (cyclophilin E), [Score=401, Expect=5e-139]} {Dmel: FBgn0028382, cyp33, cyclophilin-33, [Score=368, Expect=3e-126]} {Celegans: WBGene00000889, cyn-13, Peptidyl-prolyl cis-trans isomerase, [RH, Score=359, Expect=2e-122]} {Smed: dd_Smed_v6_5116_0_1, dd_Smed_v6_5116_0_1, [Score=377, Expect=3e-130]} {RNA1509_10667} {RNA1310_14090.1} {RNA815_7501}
2. MligTC455_48567 358 7.45 Mlig455_043150

Neo: -

Age: -

Region-enriched R5: 1.668/0.02982

 1.739 - - 0.778 - - 0.961 Mlig455_043150 {REF} {Length: 3448} {TRANSSPLICED} {RNA1509_54015} {RNA1310_37014, RNA1509_54015} {RNA1509_54015, RNA815_7246.1}
3. MligTC455_20224 1225 25.53 Mlig455_009689, Mlig455_063053

Neo: -

Age: -

 NAGK 0.964 - - - - - 0.964

Mlig455_009689 {REF} {Length: 1932} {TRANSSPLICED} {Pfam: BadF/BadG/BcrA/BcrD ATPase family [PF01869.22, score=65.2]} {Human: ENSG00000124357, NAGK, N-acetylglucosamine kinase, [RH, Score=201, Expect=6e-61]} {Mouse: ENSMUSG00000034744, Nagk, N-acetylglucosamine kinase, [RH, Score=205, Expect=2e-62]} {Dmel: FBgn0038321, CG6218, [RH, Score=193, Expect=4e-58]} {Celegans: WBGene00021057, W06B4.2, [RH, Score=133, Expect=2e-34]} {Smed: dd_Smed_v6_643_0_1, dd_Smed_v6_643_0_1, [RH, Score=132, Expect=3e-35]} {RNA1509_32084, RNA1509_59002} {RNA1310_24603, RNA1509_32084, RNA1509_59002} {RNA1509_32084, RNA1509_59002, RNA815_11105}

Mlig455_063053 {REF} {Length: 2927} {TRANSSPLICED} {Pfam: BadF/BadG/BcrA/BcrD ATPase family [PF01869.22, score=65.3]} {Human: ENSG00000124357, NAGK, N-acetylglucosamine kinase, [RH, Score=200, Expect=2e-60]} {Mouse: ENSMUSG00000034744, Nagk, N-acetylglucosamine kinase, [RH, Score=204, Expect=5e-62]} {Dmel: FBgn0038321, CG6218, [RH, Score=192, Expect=1e-57]} {Celegans: WBGene00021057, W06B4.2, [RH, Score=134, Expect=1e-34]} {Smed: dd_Smed_v6_643_0_1, dd_Smed_v6_643_0_1, [RH, Score=134, Expect=8e-36]} {RNA1509_33354} {RNA1310_24603} {RNA815_11105}
4. MligTC455_15473 216 4.51 Mlig455_063690

Neo: Neoblast, stringent

Age: logFC(26M/2M)=0.405

Region-enriched R5: 2.689/0.00003

 CHEK1 0.963 - - - - - 0.963 Mlig455_063690 {REF} {Length: 2686} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=161.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=72.6]; Kinase-like [PF14531.8, score=18.3]} {Human: ENSG00000149554, CHEK1, checkpoint kinase 1, [RH, Score=219, Expect=3e-64]} {Mouse: ENSMUSG00000032113, Chek1, checkpoint kinase 1, [RH, Score=207, Expect=4e-60]} {Dmel: FBgn0261278, grp, grapes, [RH, Score=213, Expect=1e-61]} {Celegans: WBGene00000498, chk-1, Serine/threonine-protein kinase chk-1, [RH, Score=208, Expect=2e-60]} {Smed: dd_Smed_v6_12789_0_1, dd_Smed_v6_12789_0_1, [Score=124, Expect=3e-30]} {RNA1509_12170} {RNA1310_7988} {RNA815_13053}
5. MligTC455_35501 720 15 Mlig455_048410

Neo: -

Age: Down-Up-Down

 KDM3A 0.956 - - - 0.956 - - Mlig455_048410 {REF} {Length: 7501} {Pfam: JmjC domain, hydroxylase [PF02373.24, score=27.2]; Anti-sigma-K factor rskA [PF10099.11, score=19.5]} {Human: ENSG00000115548, KDM3A, lysine demethylase 3A, [Score=167, Expect=4e-41]; ENSG00000171988, JMJD1C, jumonji domain containing 1C, [Score=166, Expect=2e-40]; ENSG00000120733, KDM3B, lysine demethylase 3B, [Score=162, Expect=2e-39]} {Mouse: ENSMUSG00000053470, Kdm3a, lysine (K)-specific demethylase 3A, [Score=171, Expect=1e-42]} {Dmel: FBgn0037703, JHDM2, JmjC domain-containing histone demethylase 2, [Score=171, Expect=5e-43]} {Smed: dd_Smed_v6_2582_0_3, dd_Smed_v6_2582_0_3, [Score=194, Expect=9e-50]} {RNA1509_15584} {RNA1310_5965.1} {RNA815_15655.1}
6. MligTC455_44777 598 12.45 Mlig455_065381

Neo: -

Age: logFC(26M/2M)=0.209

 SPART 0.954 - - - - - 0.954 Mlig455_065381 {REF} {Length: 2661} {TRANSSPLICED} {Pfam: Senescence-associated protein [PF06911.14, score=58.7]} {Human: ENSG00000133104, SPART, spartin, [Score=56.2, Expect=9e-08]} {Mouse: ENSMUSG00000036580, Spg20, spastic paraplegia 20, spartin (Troyer syndrome) homolog (human), [Score=100, Expect=9e-22]} {RNA1509_10450} {RNA1310_9098} {RNA815_5367}
7. MligTC455_28954 153 3.18 Mlig455_016094

Neo: -

Age: Up-Down-Up

 STOML1 0.953 - - - - - 0.953 Mlig455_016094 {REF} {Length: 3319} {TRANSSPLICED} {Pfam: SPFH domain / Band 7 family [PF01145.27, score=49.2]; SCP-2 sterol transfer family [PF02036.19, score=22.5]} {Human: ENSG00000067221, STOML1, stomatin like 1, [Score=124, Expect=5e-31]} {Mouse: ENSMUSG00000032333, Stoml1, stomatin-like 1, [Score=110, Expect=4e-26]} {Dmel: FBgn0030993, Mec2, [Score=73.6, Expect=5e-14]} {Celegans: WBGene00006761, unc-24, UNC-24, [Score=89.4, Expect=3e-19]} {Smed: dd_Smed_v6_14375_0_1, dd_Smed_v6_14375_0_1, [RH, Score=77.8, Expect=2e-15]} {RNA1509_34212, RNA1509_39522, RNA1509_41216} {RNA1310_14718, RNA1509_34212, RNA1509_39522, RNA1509_41216} {RNA1509_34212, RNA1509_39522, RNA1509_41216, RNA815_19618}
8. MligTC455_42332 831 17.32 Mlig455_049097

Neo: Int S/G2/M

Age: -

 HARS 0.951 - - - - - 0.951 Mlig455_049097 {REF} {Length: 3093} {TRANSSPLICED} {Pfam: Histidyl-tRNA synthetase [PF13393.8, score=151.2]; Anticodon binding domain [PF03129.22, score=47.6]} {Human: ENSG00000170445, HARS, histidyl-tRNA synthetase, [RH, Score=530, Expect=0.0]} {Mouse: ENSMUSG00000001380, Hars, histidyl-tRNA synthetase, [RH, Score=534, Expect=0.0]} {Dmel: FBgn0027087, HisRS, Histidyl-tRNA synthetase, [RH, Score=492, Expect=2e-170]} {Celegans: WBGene00002001, hars-1, Histidine--tRNA ligase, [RH, Score=439, Expect=9e-150]} {Smed: dd_Smed_v6_1304_0_2, dd_Smed_v6_1304_0_2, [RH, Score=435, Expect=6e-144]} {RNA1509_26856, RNA1509_4721} {RNA1310_6281, RNA1509_26856, RNA1509_4721} {RNA1509_26856, RNA1509_4721, RNA815_6780}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA