M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_16112

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_16112 728 15.16 Mlig455_056016

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.452

Region-enriched R5: 1.190/0.00361

 PSMD10 Mlig455_056016 {REF} {Length: 923} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=143.4]; Ankyrin repeats (many copies) [PF13637.8, score=142.2]; Ankyrin repeat [PF00023.32, score=92.1]; Ankyrin repeats (many copies) [PF13857.8, score=91.0]; Ankyrin repeat [PF13606.8, score=90.9]} {Human: ENSG00000101843, PSMD10, proteasome 26S subunit, non-ATPase 10, [RH, Score=155, Expect=2e-46]} {Mouse: ENSMUSG00000116430, Psmd10, proteasome (prosome, macropain) 26S subunit, non-ATPase, 10, [RH, Score=150, Expect=8e-45]; ENSMUSG00000031429, Psmd10, proteasome (prosome, macropain) 26S subunit, non-ATPase, 10, [RH, Score=150, Expect=8e-45]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=94.4, Expect=1e-21]} {Celegans: WBGene00185078, F40G9.17, [RH, Score=125, Expect=6e-35]} {Smed: dd_Smed_v6_8594_0_1, dd_Smed_v6_8594_0_1, [RH, Score=136, Expect=1e-39]} {RNA1509_6009} {RNA1310_34891, RNA1509_6009} {RNA1509_6009, RNA815_14270}

Cumulative graph for MligTC455_16112

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.046 4.156 0.96219 1.00000
RegionR2 -0.823 4.156 0.10123 0.39159
RegionR3 -0.503 4.156 0.21856 0.75991
RegionR4 0.574 4.156 0.18118 0.45163
RegionR5 1.19 4.156 0.00027 0.00361
RegionR6 0.435 4.156 0.25692 0.84285
RegionR7 -0.993 4.156 0.08729 0.56749
RegionR8 0.164 4.156 0.77623 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.292 4.156 0.41088 1.00000
RegenerationR2 0.681 4.156 0.12614 0.54901
RegenerationR3 0.755 4.156 0.10716 0.51730
RegenerationR4 0.45 4.156 0.31728 0.75635
RegenerationR5 0.009 4.156 0.98102 1.00000
RegenerationR6 0.217 4.156 0.62687 0.88490
RegenerationBL 0.376 4.156 0.47646 0.84224
RegenerationTP 0.579 4.156 0.31998 0.76487


Genes with expression patterns similar to MligTC455_16112

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_16112 728 15.16 Mlig455_056016

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.452

Region-enriched R5: 1.190/0.00361

 PSMD10 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_056016 {REF} {Length: 923} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=143.4]; Ankyrin repeats (many copies) [PF13637.8, score=142.2]; Ankyrin repeat [PF00023.32, score=92.1]; Ankyrin repeats (many copies) [PF13857.8, score=91.0]; Ankyrin repeat [PF13606.8, score=90.9]} {Human: ENSG00000101843, PSMD10, proteasome 26S subunit, non-ATPase 10, [RH, Score=155, Expect=2e-46]} {Mouse: ENSMUSG00000116430, Psmd10, proteasome (prosome, macropain) 26S subunit, non-ATPase, 10, [RH, Score=150, Expect=8e-45]; ENSMUSG00000031429, Psmd10, proteasome (prosome, macropain) 26S subunit, non-ATPase, 10, [RH, Score=150, Expect=8e-45]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=94.4, Expect=1e-21]} {Celegans: WBGene00185078, F40G9.17, [RH, Score=125, Expect=6e-35]} {Smed: dd_Smed_v6_8594_0_1, dd_Smed_v6_8594_0_1, [RH, Score=136, Expect=1e-39]} {RNA1509_6009} {RNA1310_34891, RNA1509_6009} {RNA1509_6009, RNA815_14270}
2. MligTC455_15375 977 20.36 Mlig455_005170

Neo: Int S/G2/M

Age: Down-Up-Up

Region-enriched R5: 1.346/0.00188

 EXOSC4 1.754 - - - 0.796 - 0.958 Mlig455_005170 {REF} {Length: 1056} {TRANSSPLICED} {Pfam: 3' exoribonuclease family, domain 1 [PF01138.23, score=104.1]; 3' exoribonuclease family, domain 2 [PF03725.17, score=19.4]} {Human: ENSG00000178896, EXOSC4, exosome component 4, [RH, Score=148, Expect=2e-43]} {Mouse: ENSMUSG00000034259, Exosc4, exosome component 4, [RH, Score=147, Expect=3e-43]} {Dmel: FBgn0032487, Ski6, [RH, Score=157, Expect=4e-47]} {Celegans: WBGene00007201, exos-4.1, Putative exosome complex component RRP41, [RH, Score=160, Expect=6e-49]} {Smed: dd_Smed_v6_4086_0_1, dd_Smed_v6_4086_0_1, [RH, Score=152, Expect=2e-45]} {RNA1509_17621} {RNA1310_26955.2} {RNA815_16545}
3. MligTC455_18896 1136 23.67 Mlig455_057881

Neo: Irradiation

Age: Down-Up-Up

 DDX52 1.653 - - - 0.701 0.952 - Mlig455_057881 {REF} {Length: 1741} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=115.0]; Helicase conserved C-terminal domain [PF00271.33, score=87.4]} {Human: ENSG00000278053, DDX52, DExD-box helicase 52, [RH, Score=289, Expect=6e-90]; ENSG00000277594, DDX52, DExD-box helicase 52, [RH, Score=288, Expect=2e-89]} {Mouse: ENSMUSG00000020677, Ddx52, DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, [RH, Score=289, Expect=3e-90]} {Dmel: FBgn0036754, CG5589, [RH, Score=278, Expect=5e-86]} {Celegans: WBGene00011032, R05D11.4, [RH, Score=253, Expect=6e-77]} {Smed: dd_Smed_v6_7870_0_1, dd_Smed_v6_7870_0_1, [RH, Score=246, Expect=2e-75]} {RNA1509_7314} {RNA1310_15587} {RNA815_6774}
4. MligTC455_18894 1132 23.59 Mlig455_021180

Neo: Irradiation

Age: -

 DDX52 0.953 - - - - 0.953 - Mlig455_021180 {REF} {Length: 1746} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=113.8]; Helicase conserved C-terminal domain [PF00271.33, score=87.4]} {Human: ENSG00000278053, DDX52, DExD-box helicase 52, [RH, Score=288, Expect=8e-90]; ENSG00000277594, DDX52, DExD-box helicase 52, [RH, Score=287, Expect=3e-89]} {Mouse: ENSMUSG00000020677, Ddx52, DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, [RH, Score=289, Expect=5e-90]} {Dmel: FBgn0036754, CG5589, [RH, Score=278, Expect=4e-86]} {Celegans: WBGene00011032, R05D11.4, [RH, Score=251, Expect=3e-76]} {Smed: dd_Smed_v6_7870_0_1, dd_Smed_v6_7870_0_1, [RH, Score=245, Expect=3e-75]} {RNA1509_7314} {RNA1310_15587, RNA1509_7314} {RNA1509_7314, RNA815_6774}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA