M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_16143

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_16143 44 0.92 Mlig455_066144

Neo: -

Age: -

 Mlig455_066144 {REF} {Length: 1180} {NoTransDecoderORF} {RNA1310_45498} {RNA815_15412}

Cumulative graph for MligTC455_16143

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.694 1.317 0.99985 1.00000
RegionR2 2.678 1.317 0.07989 0.34627
RegionR3 1.303 1.317 0.28261 0.82588
RegionR4 1.169 1.317 0.36672 0.68983
RegionR5 -2.42 1.317 0.99725 1.00000
RegionR6 -0.659 1.317 0.89910 1.00000
RegionR7 0.478 1.317 0.71697 1.00000
RegionR8 -1.856 1.317 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.893 1.317 0.99988 1.00000
RegenerationR2 -0.811 1.317 0.30440 0.74483
RegenerationR3 -0.223 1.317 0.78301 0.97647
RegenerationR4 -1.384 1.317 0.24683 0.69490
RegenerationR5 2.319 1.317 0.07539 0.42939
RegenerationR6 1.832 1.317 0.18141 0.51624
RegenerationBL 1.48 1.317 0.45845 0.82591
RegenerationTP 2.397 1.317 0.32263 0.76703


Genes with expression patterns similar to MligTC455_16143

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_16143 44 0.92 Mlig455_066144

Neo: -

Age: -

 4 - 1.000 1.000 - 1.000 1.000 Mlig455_066144 {REF} {Length: 1180} {NoTransDecoderORF} {RNA1310_45498} {RNA815_15412}
2. MligTC455_36566 40 0.83 Mlig455_053263

Neo: -

Age: -

Region-enriched R2: 4.823/0.01830

 1.911 - 0.956 0.955 - - - Mlig455_053263 {REF} {Length: 1228} {TRANSSPLICED} {RNA1310_99871}
3. MligTC455_22429 49 1.02 Mlig455_011037

Neo: -

Age: -

 1.826 - 0.969 - - - 0.857 Mlig455_011037 {REF} {Length: 3888} {Pfam: WS/DGAT C-terminal domain [PF06974.15, score=54.7]; ZIP Zinc transporter [PF02535.24, score=18.9]; Transcriptional regulator of RNA polII, SAGA, subunit [PF12767.9, score=18.7]; Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) [PF05091.14, score=18.2]} {Smed: dd_Smed_v6_7004_0_1, dd_Smed_v6_7004_0_1, [Score=150, Expect=6e-37]} {RNA1310_98904}
4. MligTC455_27860 132 2.75 Mlig455_028348

Neo: -

Age: Down-Up-Up

Region-enriched R5: 3.575/0.00470

 1.757 - 0.960 - - 0.797 - Mlig455_028348 {REF} {Length: 2024} {RNA1310_45498} {RNA815_15412}
5. MligTC455_30634 114 2.38 Mlig455_025888

Neo: -

Age: Up-Down-Up

Region-enriched R2: 6.750/0.00140

 1.75 - 0.964 0.786 - - - Mlig455_025888 {REF} {Length: 5266} {Pfam: Integrase core domain [PF00665.28, score=50.8]; DDE superfamily endonuclease [PF13358.8, score=22.0]} {Smed: dd_Smed_v6_1574_6_72, dd_Smed_v6_1574_6_72, [Score=149, Expect=3e-41]} {RNA1509_47056} {RNA1310_5710.1} {RNA815_6291.1}
6. MligTC455_44725 67 1.4 Mlig455_024194

Neo: -

Age: -

 1.724 - 0.957 0.767 - - - Mlig455_024194 {REF} {Length: 956} {RNA1310_84543} {RNA815_47586}
7. MligTC455_10578 11 0.24 Mlig455_063647

Neo: -

Age: -

 1.722 - 0.957 - - 0.765 - Mlig455_063647 {REF} {Length: 394} {NoTransDecoderORF} {RNA1310_102533} {RNA815_12221}
8. MligTC455_13902 400 8.32 Mlig455_011022, Mlig455_011835, Mlig455_013117

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.562

Region-specific R2: 6.064

Region-enriched R2: 5.080/0.00072

 1.705 - 0.960 0.745 - - -

Mlig455_011022 {REF} {Length: 631} {RNA1509_28527} {RNA1310_38436.1} {RNA815_28856}

Mlig455_011835 {REF} {Length: 2387} {RNA1509_28527} {RNA1310_38436.1} {RNA815_28856}

Mlig455_013117 {REF} {Length: 1663} {NoTransDecoderORF} {RNA1310_40518} {RNA815_20411.2}
9. MligTC455_35103 102 2.12 Mlig455_023928

Neo: -

Age: logFC(26M/2M)=-1.570

Region-enriched R2: 8.161/0.00000

 OPN4 1.68 - 0.952 0.728 - - - Mlig455_023928 {REF} {Length: 2781} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=179.7]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=34.7]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=28.9]; Olfactory receptor [PF13853.8, score=24.6]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=19.1]} {Human: ENSG00000122375, OPN4, opsin 4, [RH, Score=218, Expect=2e-65]} {Mouse: ENSMUSG00000021799, Opn4, opsin 4 (melanopsin), [RH, Score=225, Expect=1e-68]} {Dmel: FBgn0014019, Rh5, Rhodopsin 5, [RH, Score=222, Expect=2e-68]} {Celegans: WBGene00009619, npr-6, NeuroPeptide Receptor family, [Score=91.3, Expect=4e-20]} {Smed: dd_Smed_v6_15036_0_1, dd_Smed_v6_15036_0_1, [RH, Score=520, Expect=0.0]} {RNA1509_41123} {RNA1310_10673, RNA1509_41123} {RNA1509_41123, RNA815_4962}
10. MligTC455_31172 195 4.06 Mlig455_028354

Neo: -

Age: -

Region-enriched R5: 4.005/0.04475

 1.668 - 0.951 - - 0.717 - Mlig455_028354 {REF} {Length: 2036} {RNA1310_45498} {RNA815_15412}
11. MligTC455_39462 179 3.73 Mlig455_025851

Neo: -

Age: -

 1.665 - 0.705 - - - 0.960 Mlig455_025851 {REF} {Length: 2579} {Pfam: Lectin C-type domain [PF00059.23, score=35.0]} {Smed: dd_Smed_v6_84586_0_1, dd_Smed_v6_84586_0_1, [RH, Score=53.1, Expect=4e-09]} {RNA1509_47157} {RNA1310_37139.1} {RNA815_40603}
12. MligTC455_29030 141 2.93 Mlig455_061986

Neo: -

Age: logFC(26M/2M)=-0.349

Region-enriched R2: 5.117/0.03372

 FZD5 0.974 - 0.974 - - - - Mlig455_061986 {REF} {Length: 3701} {Pfam: Frizzled/Smoothened family membrane region [PF01534.19, score=386.1]; Fz domain [PF01392.24, score=95.9]} {Human: ENSG00000163251, FZD5, frizzled class receptor 5, [Score=582, Expect=0.0]} {Mouse: ENSMUSG00000045005, Fzd5, frizzled class receptor 5, [RH, Score=586, Expect=0.0]} {Dmel: FBgn0016797, fz2, frizzled 2, [Score=545, Expect=0.0]} {Celegans: WBGene00000478, cfz-2, Frizzled-2, [Score=388, Expect=7e-127]} {Smed: dd_Smed_v6_16571_0_1, dd_Smed_v6_16571_0_1, [RH, Score=556, Expect=0.0]} {RNA1509_35313} {RNA1310_9623.1} {RNA815_2562.1}
13. MligTC455_01800 93 1.93 Mlig455_052205

Neo: -

Age: -

 0.969 - - 0.969 - - - Mlig455_052205 {REF} {Length: 1282} {NoTransDecoderORF} {RNA1509_6341} {RNA1310_13441.1} {RNA815_5624}
14. MligTC455_53657 221 4.6 Mlig455_039396

Neo: -

Age: -

Region-enriched R2: 6.078/0.00340

 0.968 - 0.968 - - - - Mlig455_039396 {REF} {Length: 1026} {Pfam: emp24/gp25L/p24 family/GOLD [PF01105.26, score=21.0]} {RNA1509_40972} {RNA1310_35649.1, RNA1509_40972} {RNA1509_40972, RNA815_17004}
15. MligTC455_42119 23 0.48 Mlig455_048048

Neo: -

Age: -

 PLEKHG7 0.967 - 0.967 - - - - Mlig455_048048 {REF} {Length: 4144} {Pfam: RhoGEF domain [PF00621.22, score=70.1]; Pleckstrin homology domain [PF16652.7, score=40.3]; PH domain [PF17838.3, score=20.3]; Pleckstrin homology domain [PF15405.8, score=19.6]} {Human: ENSG00000187510, PLEKHG7, pleckstrin homology and RhoGEF domain containing G7, [RH, Score=258, Expect=1e-72]} {Mouse: ENSMUSG00000039713, Plekhg5, pleckstrin homology domain containing, family G (with RhoGef domain) member 5, [Score=137, Expect=3e-32]} {Dmel: FBgn0261556, CG42674, [Score=107, Expect=6e-23]} {Celegans: WBGene00022391, Y95B8A.12, [RH, Score=308, Expect=1e-91]} {Smed: dd_Smed_v6_20050_0_1, dd_Smed_v6_20050_0_1, [RH, Score=650, Expect=0.0]} {RNA1509_23901} {RNA1310_57253} {RNA815_58338}
16. MligTC455_19412 42 0.88 Mlig455_047997

Neo: -

Age: -

 0.963 - 0.963 - - - - Mlig455_047997 {REF} {Length: 701} {RNA1310_53549} {RNA815_27051}
17. MligTC455_18114 414 8.63 Mlig455_038324, Mlig455_050230

Neo: -

Age: Down-Up-Down

 0.962 - 0.962 - - - -

Mlig455_038324 {REF} {Length: 2163} {Pfam: Transmembrane protein family 72 [PF16054.7, score=60.9]} {Smed: dd_Smed_v6_6789_0_1, dd_Smed_v6_6789_0_1, [RH, Score=94.7, Expect=4e-24]} {RNA1509_37575} {RNA1310_23999} {RNA815_9176.1}

Mlig455_050230 {REF} {Length: 2326} {Pfam: Transmembrane protein family 72 [PF16054.7, score=60.9]} {Smed: dd_Smed_v6_6789_0_1, dd_Smed_v6_6789_0_1, [RH, Score=94.7, Expect=4e-24]} {RNA1509_37575} {RNA1310_23999, RNA1509_37575} {RNA1509_37575, RNA815_26984}
18. MligTC455_24417 116 2.42 Mlig455_069130

Neo: -

Age: logFC(26M/2M)=-0.759

 0.961 - - 0.961 - - - Mlig455_069130 {REF} {Length: 2601} {RNA1310_33116} {RNA815_41020}
19. MligTC455_05659 9 0.19 Mlig455_000779

Neo: -

Age: -

 0.959 - 0.959 - - - - Mlig455_000779 {REF} {Length: 525} {RNA1509_14736} {RNA1310_6965} {RNA815_41421}
20. MligTC455_17363 62 1.28 Mlig455_003936

Neo: -

Age: -

 0.958 - 0.958 - - - - Mlig455_003936 {REF} {Length: 1252} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=45.9]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=26.4]} {RNA1310_47889} {RNA815_24646}
21. MligTC455_37701 47 0.98 Mlig455_029831

Neo: -

Age: -

Region-enriched R2: 8.298/0.02665

 0.958 - 0.958 - - - - Mlig455_029831 {REF} {Length: 724} {RNA1310_73844}
22. MligTC455_12269 42 0.88 Mlig455_062448

Neo: -

Age: -

Region-enriched R2: 6.351/0.02912

 0.957 - 0.957 - - - - Mlig455_062448 {REF} {Length: 941} {RNA1310_43338} {RNA815_24238}
23. MligTC455_13903 648 13.5 Mlig455_013116

Neo: -

Age: logFC(26M/2M)=-1.026

Region-specific R2: 6.980

Region-enriched R2: 7.338/0.00000

 0.957 - 0.957 - - - - Mlig455_013116 {REF} {Length: 914} {RNA1509_28527} {RNA1310_38436.2, RNA1509_28527} {RNA1509_28527, RNA815_28856}
24. MligTC455_14059 24 0.5 Mlig455_037086

Neo: -

Age: -

Region-enriched R2: 8.935/0.00338

 0.957 - 0.957 - - - - Mlig455_037086 {REF} {Length: 1622} {Pfam: Galactosyltransferase [PF01762.23, score=18.6]} {RNA1310_57689} {RNA815_57743}
25. MligTC455_26539 23 0.47 Mlig455_018962

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.898

 0.956 - 0.956 - - - - Mlig455_018962 {REF} {Length: 5494} {RNA1509_37248} {RNA1310_79832} {RNA815_56530}
26. MligTC455_49285 164 3.41 Mlig455_004486, Mlig455_037380

Neo: -

Age: -

Region-specific R2: 6.095

Region-enriched R2: 5.942/0.00244

 LEF1 0.955 - 0.955 - - - -

Mlig455_004486 {REF} {Length: 3612} {Pfam: HMG (high mobility group) box [PF00505.21, score=30.1]} {Human: ENSG00000138795, LEF1, lymphoid enhancer binding factor 1, [Score=105, Expect=2e-24]; ENSG00000081059, TCF7, transcription factor 7, [Score=103, Expect=3e-25]; ENSG00000152284, TCF7L1, transcription factor 7 like 1, [Score=100, Expect=2e-22]} {Mouse: ENSMUSG00000027985, Lef1, lymphoid enhancer binding factor 1, [Score=105, Expect=6e-25]; ENSMUSG00000000782, Tcf7, transcription factor 7, T cell specific, [Score=101, Expect=8e-24]; ENSMUSG00000055799, Tcf7l1, transcription factor 7 like 1 (T cell specific, HMG box), [Score=100, Expect=1e-22]} {Dmel: FBgn0085432, pan, pangolin, [Score=103, Expect=1e-23]} {Celegans: WBGene00004077, pop-1, [Score=82.0, Expect=8e-17]} {Smed: dd_Smed_v6_34144_0_1, dd_Smed_v6_34144_0_1, [Score=114, Expect=3e-29]} {RNA1509_13914} {RNA1310_16097} {RNA815_47141}

Mlig455_037380 {REF} {Length: 3365} {Pfam: HMG (high mobility group) box [PF00505.21, score=78.7]; HMG-box domain [PF09011.12, score=32.5]} {Human: ENSG00000138795, LEF1, lymphoid enhancer binding factor 1, [RH, Score=156, Expect=1e-43]; ENSG00000152284, TCF7L1, transcription factor 7 like 1, [RH, Score=154, Expect=7e-41]; ENSG00000081059, TCF7, transcription factor 7, [RH, Score=154, Expect=3e-44]; ENSG00000148737, TCF7L2, transcription factor 7 like 2, [RH, Score=150, Expect=6e-44]} {Mouse: ENSMUSG00000027985, Lef1, lymphoid enhancer binding factor 1, [RH, Score=157, Expect=9e-44]; ENSMUSG00000055799, Tcf7l1, transcription factor 7 like 1 (T cell specific, HMG box), [RH, Score=156, Expect=1e-41]; ENSMUSG00000000782, Tcf7, transcription factor 7, T cell specific, [RH, Score=153, Expect=1e-42]} {Dmel: FBgn0085432, pan, pangolin, [RH, Score=155, Expect=1e-40]} {Celegans: WBGene00004077, pop-1, [Score=104, Expect=4e-24]} {Smed: dd_Smed_v6_34144_0_1, dd_Smed_v6_34144_0_1, [RH, Score=165, Expect=2e-48]} {RNA1509_13914} {RNA1310_16097} {RNA815_47141}
27. MligTC455_11557 202 4.2 Mlig455_002032, Mlig455_002122

Neo: -

Age: Down-Up-Up

Region-enriched R2: 4.361/0.00656

 LIMS2 0.954 - 0.954 - - - -

Mlig455_002032 {REF} {Length: 1855} {RNA1509_54456} {RNA1310_17112} {RNA815_6319.1}

Mlig455_002122 {REF} {Length: 3000} {Pfam: LIM domain [PF00412.24, score=36.8]} {Human: ENSG00000072163, LIMS2, LIM zinc finger domain containing 2, [Score=111, Expect=5e-26]; ENSG00000169756, LIMS1, LIM zinc finger domain containing 1, [Score=107, Expect=1e-24]} {Mouse: ENSMUSG00000019920, Lims1, LIM and senescent cell antigen-like domains 1, [Score=107, Expect=1e-24]; ENSMUSG00000024395, Lims2, LIM and senescent cell antigen like domains 2, [Score=103, Expect=2e-23]} {Dmel: FBgn0020249, stck, steamer duck, [Score=131, Expect=3e-33]} {Celegans: WBGene00006826, unc-97, LIM domain-containing protein unc-97, [Score=129, Expect=1e-32]} {Smed: dd_Smed_v6_2476_0_1, dd_Smed_v6_2476_0_1, [Score=139, Expect=6e-36]} {RNA1509_57197} {RNA1310_17112} {RNA815_6319.1}
28. MligTC455_53504 217 4.51 Mlig455_037385

Neo: -

Age: -

Region-enriched R2: 3.142/0.00738

 CSMD1 0.952 - 0.952 - - - - Mlig455_037385 {REF} {Length: 2214} {Pfam: Sushi repeat (SCR repeat) [PF00084.22, score=198.7]} {Human: ENSG00000183117, CSMD1, CUB and Sushi multiple domains 1, [Score=149, Expect=8e-37]} {Mouse: ENSMUSG00000028369, Svep1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=136, Expect=7e-33]; ENSMUSG00000060924, Csmd1, CUB and Sushi multiple domains 1, [Score=134, Expect=5e-32]; ENSMUSG00000022311, Csmd3, CUB and Sushi multiple domains 3, [Score=133, Expect=9e-32]} {Dmel: FBgn0032797, Hasp, Hig-anchoring scaffold protein, [RH, Score=218, Expect=3e-60]} {Celegans: WBGene00002976, lev-9, [RH, Score=244, Expect=4e-72]} {Smed: dd_Smed_v6_13071_0_1, dd_Smed_v6_13071_0_1, [RH, Score=296, Expect=1e-91]} {RNA1509_55985} {RNA1310_12867.1, RNA1509_55985} {RNA1509_55985, RNA815_9157}
29. MligTC455_14740 48 1.01 Mlig455_010989

Neo: -

Age: -

 LRRC74A 0.951 - 0.951 - - - - Mlig455_010989 {REF} {Length: 11280} {TRANSSPLICED} {Pfam: Leucine Rich repeat [PF13516.8, score=103.2]; Leucine Rich Repeat [PF00560.35, score=29.2]; Leucine Rich repeats (2 copies) [PF12799.9, score=28.4]} {Human: ENSG00000100565, LRRC74A, leucine rich repeat containing 74A, [Score=157, Expect=2e-41]} {Mouse: ENSMUSG00000059114, Lrrc74a, leucine rich repeat containing 74A, [Score=153, Expect=5e-40]} {Dmel: FBgn0033212, LRR, Leucine-rich repeat, [Score=51.6, Expect=2e-06]} {Celegans: WBGene00009201, F28C1.3, Protein phosphatase 1 regulatory subunit 37 homolog, [Score=75.5, Expect=5e-14]} {Smed: dd_Smed_v6_14506_0_1, dd_Smed_v6_14506_0_1, [Score=151, Expect=3e-39]} {RNA1509_2416} {RNA1310_17273} {RNA815_6564.1}
30. MligTC455_19126 10 0.2 Mlig455_009225

Neo: -

Age: -

 0.951 - 0.951 - - - - Mlig455_009225 {REF} {Length: 1570} {Pfam: Galactosyltransferase [PF01762.23, score=21.4]} {Mouse: ENSMUSG00000031803, B3gnt3, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3, [Score=50.4, Expect=1e-06]} {RNA1310_57689} {RNA815_57743}
31. MligTC455_30913 19 0.39 Mlig455_034474, Mlig455_042925, Mlig455_042926

Neo: -

Age: -

 0.951 - - 0.951 - - -

Mlig455_034474 {REF} {Length: 671} {NoTransDecoderORF} {RNA1509_55508} {RNA1310_19597} {RNA815_31859}

Mlig455_042925 {REF} {Length: 2534} {RNA1509_55508} {RNA1310_19597} {RNA815_31859}

Mlig455_042926 {REF} {Length: 16695} {RNA1509_55508} {RNA1310_19597} {RNA815_31859}
32. MligTC455_40040 365 7.61 Mlig455_008332

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.784

Region-specific R2: 6.834

Region-enriched R2: 5.705/0.00005

 0.95 - 0.950 - - - - Mlig455_008332 {REF} {Length: 707} {RNA1509_39735} {RNA1310_73916, RNA1509_39735} {RNA1509_39735, RNA815_42730.2}
33. MligTC455_47197 155 3.24 Mlig455_049096, Mlig455_049118

Neo: -

Age: -

 0.95 - 0.950 - - - -

Mlig455_049096 {REF} {Length: 3209} {Smed: dd_Smed_v6_14861_0_1, dd_Smed_v6_14861_0_1, [Score=151, Expect=1e-37]} {RNA1509_52343} {RNA1310_44918.1} {RNA815_41725}

Mlig455_049118 {REF} {Length: 3116} {Smed: dd_Smed_v6_14861_0_1, dd_Smed_v6_14861_0_1, [Score=160, Expect=1e-40]} {RNA1509_52343} {RNA1310_44918.1} {RNA815_41725}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA