TomoSeq data search

Data search

Results for MligTC455_16332

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_16332

1988

41.42

Mlig455_052163, Mlig455_060711

Neo: -

Age: Down-Up-Up

CALM2

Mlig455_052163 {REF} {Length: 787} {Pfam: EF hand [PF00036.34, score=113.3]; EF-hand domain pair [PF13499.8, score=112.8]; EF-hand domain [PF13405.8, score=90.5]; EF hand [PF13202.8, score=86.1]; EF-hand domain pair [PF13833.8, score=85.9]; EF-hand domain [PF14658.8, score=52.2]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=39.9]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=30.1]; Dockerin type I domain [PF00404.20, score=20.2]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=123, Expect=1e-35]; ENSG00000160014, CALM3, calmodulin 3, [Score=122, Expect=8e-36]; ENSG00000198668, CALM1, calmodulin 1, [Score=122, Expect=8e-36]; ENSG00000101470, TNNC2, troponin C2, fast skeletal type, [Score=117, Expect=9e-34]} {Mouse: ENSMUSG00000001175, Calm1, calmodulin 1, [Score=124, Expect=7e-36]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=122, Expect=5e-36]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=122, Expect=5e-36]; ENSMUSG00000033765, Calm4, calmodulin 4, [Score=119, Expect=1e-34]; ENSMUSG00000017300, Tnnc2, troponin C2, fast, [Score=119, Expect=1e-34]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=123, Expect=2e-36]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=122, Expect=4e-36]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [Score=122, Expect=3e-36]} {RNA1509_26846} {RNA1310_41375, RNA1509_26846} {RNA1509_26846, RNA815_13224.1}

Mlig455_060711 {REF} {Length: 805} {Pfam: EF hand [PF00036.34, score=113.3]; EF-hand domain pair [PF13499.8, score=112.8]; EF-hand domain [PF13405.8, score=90.5]; EF hand [PF13202.8, score=86.1]; EF-hand domain pair [PF13833.8, score=85.9]; EF-hand domain [PF14658.8, score=52.2]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=39.9]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=30.1]; Dockerin type I domain [PF00404.20, score=20.2]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=123, Expect=1e-35]; ENSG00000160014, CALM3, calmodulin 3, [Score=122, Expect=8e-36]; ENSG00000198668, CALM1, calmodulin 1, [Score=122, Expect=8e-36]; ENSG00000101470, TNNC2, troponin C2, fast skeletal type, [Score=117, Expect=9e-34]} {Mouse: ENSMUSG00000001175, Calm1, calmodulin 1, [Score=124, Expect=7e-36]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=122, Expect=5e-36]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=122, Expect=5e-36]; ENSMUSG00000033765, Calm4, calmodulin 4, [Score=119, Expect=1e-34]; ENSMUSG00000017300, Tnnc2, troponin C2, fast, [Score=119, Expect=1e-34]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=123, Expect=2e-36]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=122, Expect=4e-36]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [Score=122, Expect=3e-36]} {RNA1509_26846, RNA1509_39300} {RNA1310_41375, RNA1509_39300} {RNA1509_39300, RNA815_13224.1}

Cumulative graph for MligTC455_16332

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.111	5.591	0.15651	0.77498
RegionR2	0.519	5.591	0.18036	0.53071
RegionR3	0.366	5.591	0.25302	0.79714
RegionR4	0.197	5.591	0.62846	0.93682
RegionR5	-0.589	5.591	0.08280	0.26846
RegionR6	-0.181	5.591	0.59454	1.00000
RegionR7	0.328	5.591	0.34773	0.98514
RegionR8	0.472	5.591	0.22482	0.83400

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-7.706	5.591	0.03124	0.63255
RegenerationR2	0.01	5.591	0.97885	1.00000
RegenerationR3	-0.415	5.591	0.30582	0.73676
RegenerationR4	-0.513	5.591	0.24211	0.69055
RegenerationR5	-0.6	5.591	0.14971	0.56765
RegenerationR6	-0.306	5.591	0.46361	0.78033
RegenerationBL	-1.367	5.591	0.00198	0.03590
RegenerationTP	-0.344	5.591	0.41564	0.84087

Genes with expression patterns similar to MligTC455_16332

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_16332	1988	41.42	Mlig455_052163, Mlig455_060711	Neo: - Age: Down-Up-Up	CALM2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_052163 {REF} {Length: 787} {Pfam: EF hand [PF00036.34, score=113.3]; EF-hand domain pair [PF13499.8, score=112.8]; EF-hand domain [PF13405.8, score=90.5]; EF hand [PF13202.8, score=86.1]; EF-hand domain pair [PF13833.8, score=85.9]; EF-hand domain [PF14658.8, score=52.2]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=39.9]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=30.1]; Dockerin type I domain [PF00404.20, score=20.2]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=123, Expect=1e-35]; ENSG00000160014, CALM3, calmodulin 3, [Score=122, Expect=8e-36]; ENSG00000198668, CALM1, calmodulin 1, [Score=122, Expect=8e-36]; ENSG00000101470, TNNC2, troponin C2, fast skeletal type, [Score=117, Expect=9e-34]} {Mouse: ENSMUSG00000001175, Calm1, calmodulin 1, [Score=124, Expect=7e-36]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=122, Expect=5e-36]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=122, Expect=5e-36]; ENSMUSG00000033765, Calm4, calmodulin 4, [Score=119, Expect=1e-34]; ENSMUSG00000017300, Tnnc2, troponin C2, fast, [Score=119, Expect=1e-34]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=123, Expect=2e-36]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=122, Expect=4e-36]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [Score=122, Expect=3e-36]} {RNA1509_26846} {RNA1310_41375, RNA1509_26846} {RNA1509_26846, RNA815_13224.1} Mlig455_060711 {REF} {Length: 805} {Pfam: EF hand [PF00036.34, score=113.3]; EF-hand domain pair [PF13499.8, score=112.8]; EF-hand domain [PF13405.8, score=90.5]; EF hand [PF13202.8, score=86.1]; EF-hand domain pair [PF13833.8, score=85.9]; EF-hand domain [PF14658.8, score=52.2]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=39.9]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=30.1]; Dockerin type I domain [PF00404.20, score=20.2]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=123, Expect=1e-35]; ENSG00000160014, CALM3, calmodulin 3, [Score=122, Expect=8e-36]; ENSG00000198668, CALM1, calmodulin 1, [Score=122, Expect=8e-36]; ENSG00000101470, TNNC2, troponin C2, fast skeletal type, [Score=117, Expect=9e-34]} {Mouse: ENSMUSG00000001175, Calm1, calmodulin 1, [Score=124, Expect=7e-36]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=122, Expect=5e-36]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=122, Expect=5e-36]; ENSMUSG00000033765, Calm4, calmodulin 4, [Score=119, Expect=1e-34]; ENSMUSG00000017300, Tnnc2, troponin C2, fast, [Score=119, Expect=1e-34]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=123, Expect=2e-36]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=122, Expect=4e-36]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [Score=122, Expect=3e-36]} {RNA1509_26846, RNA1509_39300} {RNA1310_41375, RNA1509_39300} {RNA1509_39300, RNA815_13224.1}
2.	MligTC455_40846	835	17.39	Mlig455_030827, Mlig455_047790	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.236	KCNMA1	3.298	0.709	-	-	0.792	0.813	0.984	Mlig455_030827 {REF} {Length: 3985} {Pfam: Calcium-activated BK potassium channel alpha subunit [PF03493.20, score=88.0]; Ion channel [PF07885.18, score=46.9]; Ion transport protein [PF00520.33, score=25.2]; TrkA-N domain [PF02254.20, score=24.3]} {Human: ENSG00000156113, KCNMA1, potassium calcium-activated channel subfamily M alpha 1, [Score=482, Expect=1e-151]} {Mouse: ENSMUSG00000063142, Kcnma1, potassium large conductance calcium-activated channel, subfamily M, alpha member 1, [Score=481, Expect=3e-151]} {Dmel: FBgn0003429, slo, slowpoke, [Score=339, Expect=4e-99]} {Celegans: WBGene00004830, slo-1, Calcium-activated potassium channel slo-1, [Score=459, Expect=8e-144]} {Smed: dd_Smed_v6_5509_0_1, dd_Smed_v6_5509_0_1, [Score=479, Expect=1e-151]} {RNA1509_12064, RNA1509_38332} {RNA1310_2763, RNA1509_38332} {RNA1509_38332, RNA815_792.1} Mlig455_047790 {REF} {Length: 4417} {Pfam: Calcium-activated BK potassium channel alpha subunit [PF03493.20, score=87.7]; Ion channel [PF07885.18, score=46.7]; TrkA-N domain [PF02254.20, score=23.6]; Ion transport protein [PF00520.33, score=21.9]} {Human: ENSG00000156113, KCNMA1, potassium calcium-activated channel subfamily M alpha 1, [Score=479, Expect=1e-148]} {Mouse: ENSMUSG00000063142, Kcnma1, potassium large conductance calcium-activated channel, subfamily M, alpha member 1, [Score=478, Expect=7e-149]} {Dmel: FBgn0003429, slo, slowpoke, [Score=340, Expect=2e-98]} {Celegans: WBGene00004830, slo-1, Calcium-activated potassium channel slo-1, [Score=455, Expect=1e-140]} {Smed: dd_Smed_v6_5509_0_1, dd_Smed_v6_5509_0_1, [Score=475, Expect=3e-148]} {RNA1509_38332, RNA1509_48456} {RNA1310_2763, RNA1509_48456} {RNA1509_48456, RNA815_792.1}
3.	MligTC455_19238	1276	26.59	Mlig455_070096	Neo: - Age: Down-Up-Up	KDM8	2.59	-	0.834	0.795	-	-	0.961	Mlig455_070096 {REF} {Length: 3168} {Pfam: Cupin-like domain [PF13621.8, score=105.4]; EF hand [PF13202.8, score=22.8]; EF hand [PF00036.34, score=20.4]; EF-hand domain pair [PF13499.8, score=20.1]} {Human: ENSG00000155666, KDM8, lysine demethylase 8, [Score=63.9, Expect=2e-10]} {Mouse: ENSMUSG00000030752, Kdm8, lysine (K)-specific demethylase 8, [Score=66.2, Expect=3e-11]} {Dmel: FBgn0035166, CG13902, [Score=69.3, Expect=2e-12]} {Smed: dd_Smed_v6_11273_0_1, dd_Smed_v6_11273_0_1, [Score=222, Expect=7e-68]} {RNA1509_6200} {RNA1310_20380} {RNA815_8139}
4.	MligTC455_08757	509	10.61	Mlig455_010905	Neo: - Age: -		2.565	-	0.752	-	0.854	0.959	-	Mlig455_010905 {REF} {Length: 1700} {TRANSSPLICED} {Smed: dd_Smed_v6_5437_0_2, dd_Smed_v6_5437_0_2, [Score=62.8, Expect=1e-12]} {RNA1509_51881} {RNA1310_201.1} {RNA815_6427.2}
5.	MligTC455_35488	1499	31.23	Mlig455_005572	Neo: - Age: logFC(26M/2M)=-0.333 Region-enriched R4: 1.174/0.00948 Region-enriched R2: 1.061/0.03531		2.552	-	-	-	0.756	0.844	0.952	Mlig455_005572 {REF} {Length: 3710} {TRANSSPLICED} {Pfam: Acetyl-CoA hydrolase/transferase C-terminal domain [PF13336.8, score=191.5]; Acetyl-CoA hydrolase/transferase N-terminal domain [PF02550.17, score=83.3]} {Dmel: FBgn0039737, CG7920, [RH, Score=516, Expect=0.0]} {Celegans: WBGene00016630, acer-1, ACEtyl-CoA Regulator, [RH, Score=503, Expect=1e-176]} {Smed: dd_Smed_v6_1775_0_1, dd_Smed_v6_1775_0_1, [RH, Score=607, Expect=0.0]} {RNA1509_17423, RNA1509_28495, RNA1509_29756, RNA1509_41178, RNA1509_43841, RNA1509_49680, RNA1509_7210} {RNA1310_12077.2, RNA1509_17423, RNA1509_29756, RNA1509_41178, RNA1509_43841, RNA1509_49680, RNA1509_7210} {RNA1509_17423, RNA1509_29756, RNA1509_41178, RNA1509_43841, RNA1509_49680, RNA1509_7210, RNA815_3460.1}
6.	MligTC455_42705	2141	44.61	Mlig455_043890	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.352 Region-enriched R2: 1.601/0.00749		2.535	-	-	0.704	-	0.951	0.880	Mlig455_043890 {REF} {Length: 1455} {Smed: dd_Smed_v6_3220_0_1, dd_Smed_v6_3220_0_1, [RH, Score=105, Expect=2e-30]} {RNA1509_12375} {RNA1310_57925} {RNA815_34950}
7.	MligTC455_43317	3611	75.23	Mlig455_060211, Mlig455_070472	Neo: - Age: Down-Down-Up	C10orf53	1.718	-	-	-	0.760	0.958	-	Mlig455_060211 {REF} {Length: 460} {TRANSSPLICED} {Pfam: Uncharacterised protein family UPF0728 [PF15092.8, score=94.5]} {Human: ENSG00000178645, C10orf53, chromosome 10 open reading frame 53, [RH, Score=87.4, Expect=1e-23]} {Mouse: ENSMUSG00000072473, 1700024G13Rik, RIKEN cDNA 1700024G13 gene, [RH, Score=90.1, Expect=6e-25]} {Smed: dd_Smed_v6_10501_0_1, dd_Smed_v6_10501_0_1, [RH, Score=79.7, Expect=3e-21]} {RNA1509_5492} {RNA1310_40240} {RNA815_43806} Mlig455_070472 {REF} {Length: 868} {TRANSSPLICED} {Pfam: Uncharacterised protein family UPF0728 [PF15092.8, score=94.6]} {Human: ENSG00000178645, C10orf53, chromosome 10 open reading frame 53, [RH, Score=87.8, Expect=8e-24]} {Mouse: ENSMUSG00000072473, 1700024G13Rik, RIKEN cDNA 1700024G13 gene, [RH, Score=90.5, Expect=5e-25]} {Smed: dd_Smed_v6_10501_0_1, dd_Smed_v6_10501_0_1, [RH, Score=79.7, Expect=3e-21]} {RNA1509_26385, RNA1509_5492} {RNA1310_40240, RNA1509_26385, RNA1509_5492} {RNA1509_26385, RNA1509_5492, RNA815_43806}
8.	MligTC455_19016	1753	36.53	Mlig455_049231	Neo: - Age: - Region-enriched R8: 3.737/0.00000 Region-enriched R7: 1.909/0.00874		1.713	-	-	-	-	0.953	0.760	Mlig455_049231 {REF} {Length: 1119} {RNA1509_20526} {RNA1310_3134} {RNA815_4231}
9.	MligTC455_40437	142	2.96	Mlig455_007644	Neo: - Age: logFC(26M/2M)=-0.263		1.712	-	-	-	0.958	0.754	-	Mlig455_007644 {REF} {Length: 3098} {TRANSSPLICED} {Pfam: Fasciclin domain [PF02469.24, score=126.6]} {Dmel: FBgn0260745, mfas, midline fasciclin, [Score=50.4, Expect=5e-06]} {Celegans: WBGene00009162, F26E4.7, [RH, Score=67.4, Expect=2e-11]} {RNA1509_10760} {RNA1310_4612.1} {RNA815_1343.1}
10.	MligTC455_48305	889	18.52	Mlig455_061940	Neo: - Age: -		1.684	-	-	-	0.716	-	0.968	Mlig455_061940 {REF} {Length: 764} {NoTransDecoderORF} {RNA1509_29524, RNA1509_47519} {RNA1310_54332, RNA1509_29524, RNA1509_47519} {RNA1509_29524, RNA1509_47519, RNA815_32209}
11.	MligTC455_38553	176	3.66	Mlig455_038193	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.503	DCHS1	0.971	-	-	-	-	-	0.971	Mlig455_038193 {REF} {Length: 9281} {Pfam: Cadherin domain [PF00028.19, score=631.3]; Cadherin-like [PF08266.14, score=33.8]; Cadherin-like [PF16184.7, score=29.7]; RET Cadherin like domain 1 [PF17756.3, score=22.2]} {Human: ENSG00000166341, DCHS1, dachsous cadherin-related 1, [Score=471, Expect=1e-132]} {Mouse: ENSMUSG00000102692, Dchs2, dachsous cadherin related 2, [Score=472, Expect=4e-133]; ENSMUSG00000036862, Dchs1, dachsous cadherin related 1, [Score=451, Expect=1e-126]} {Dmel: FBgn0284247, ds, dachsous, [Score=495, Expect=2e-140]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=240, Expect=5e-63]} {Smed: dd_Smed_v6_11744_0_1, dd_Smed_v6_11744_0_1, [Score=200, Expect=9e-51]} {RNA1509_7140} {RNA1310_695} {RNA815_267}
12.	MligTC455_31863	390	8.13	Mlig455_007159	Neo: - Age: Up-Down-Up Regeneration-upregulated BL: 5.272 Regeneration-enriched BL: 5.272	PPP2R3C	0.965	-	-	-	-	0.965	-	Mlig455_007159 {REF} {Length: 7241} {TRANSSPLICED} {Pfam: EF-hand domain [PF13405.8, score=29.1]; EF-hand domain pair [PF13499.8, score=28.1]; EF hand [PF00036.34, score=19.1]} {Human: ENSG00000092020, PPP2R3C, protein phosphatase 2 regulatory subunit B''gamma, [Score=416, Expect=4e-142]} {Mouse: ENSMUSG00000021022, Ppp2r3c, protein phosphatase 2, regulatory subunit B'', gamma, [Score=418, Expect=3e-143]} {Dmel: FBgn0038744, CG4733, [Score=98.2, Expect=2e-21]} {Smed: dd_Smed_v6_10614_0_1, dd_Smed_v6_10614_0_1, [Score=397, Expect=8e-136]} {RNA1509_34380} {RNA1310_18272} {RNA815_7249}
13.	MligTC455_48477	1292	26.92	Mlig455_053235, Mlig455_066374, Mlig455_067867	Neo: - Age: logFC(26M/2M)=-0.325	USP40	0.957	-	-	-	-	-	0.957	Mlig455_053235 {REF} {Length: 5648} {RNA1509_19410} {RNA1310_1195.2} {RNA815_1416} Mlig455_066374 {REF} {Length: 5075} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=136.3]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=47.7]} {Human: ENSG00000085982, USP40, ubiquitin specific peptidase 40, [Score=261, Expect=9e-71]} {Mouse: ENSMUSG00000005501, Usp40, ubiquitin specific peptidase 40, [Score=234, Expect=3e-62]} {Dmel: FBgn0016756, Usp47, Ubiquitin specific protease 47, [Score=194, Expect=8e-50]} {Celegans: WBGene00011507, T05H10.1, Ubiquitin carboxyl-terminal hydrolase, [RH, Score=179, Expect=4e-45]} {Smed: dd_Smed_v6_1847_0_2, dd_Smed_v6_1847_0_2, [Score=152, Expect=6e-37]} {RNA1509_19410} {RNA1310_1195.1, RNA1509_19410} {RNA1509_19410, RNA815_1416} Mlig455_067867 {REF} {Length: 5189} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=136.6]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=47.8]} {Human: ENSG00000085982, USP40, ubiquitin specific peptidase 40, [Score=261, Expect=2e-70]} {Mouse: ENSMUSG00000005501, Usp40, ubiquitin specific peptidase 40, [Score=233, Expect=4e-62]} {Dmel: FBgn0016756, Usp47, Ubiquitin specific protease 47, [Score=193, Expect=2e-49]} {Celegans: WBGene00011507, T05H10.1, Ubiquitin carboxyl-terminal hydrolase, [RH, Score=179, Expect=5e-45]} {Smed: dd_Smed_v6_1847_0_1, dd_Smed_v6_1847_0_1, [Score=152, Expect=7e-37]} {RNA1509_19410} {RNA1310_1195.1} {RNA815_1416}
14.	MligTC455_17630	85	1.78	Mlig455_023606	Neo: - Age: Down-Up-Up Region-enriched R4: 3.942/0.04499		0.951	-	-	-	0.951	-	-	Mlig455_023606 {REF} {Length: 2774} {TRANSSPLICED} {Pfam: DNA-binding nuclear phosphoprotein p8 [PF10195.11, score=28.1]} {Smed: dd_Smed_v6_713_0_1, dd_Smed_v6_713_0_1, [Score=42.7, Expect=6e-07]} {RNA1509_15792, RNA1509_41747} {RNA1310_62655, RNA1509_15792} {RNA1509_15792, RNA815_37650}

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