TomoSeq data search

Data search

Results for MligTC455_16494

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_16494	50	1.03	Mlig455_055970	Neo: - Age: -	HNRNPL	Mlig455_055970 {REF} {Length: 2835} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=105.4]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=89.8]; Occluded RNA-recognition motif [PF16842.7, score=31.8]; RRM-like domain [PF11835.10, score=21.8]} {Human: ENSG00000282947, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=172, Expect=2e-46]; ENSG00000104824, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=172, Expect=2e-46]} {Mouse: ENSMUSG00000015165, Hnrnpl, heterogeneous nuclear ribonucleoprotein L, [Score=172, Expect=1e-46]} {Dmel: FBgn0003435, sm, smooth, [Score=148, Expect=1e-38]} {Celegans: WBGene00016624, C44B7.2, [Score=100, Expect=3e-22]} {Smed: dd_Smed_v6_1327_0_1, dd_Smed_v6_1327_0_1, [Score=188, Expect=6e-53]} {RNA1509_51231} {RNA1310_13979} {RNA815_16343}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_16494

1.03

Mlig455_055970

Neo: -

Age: -

HNRNPL

Mlig455_055970 {REF} {Length: 2835} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=105.4]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=89.8]; Occluded RNA-recognition motif [PF16842.7, score=31.8]; RRM-like domain [PF11835.10, score=21.8]} {Human: ENSG00000282947, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=172, Expect=2e-46]; ENSG00000104824, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=172, Expect=2e-46]} {Mouse: ENSMUSG00000015165, Hnrnpl, heterogeneous nuclear ribonucleoprotein L, [Score=172, Expect=1e-46]} {Dmel: FBgn0003435, sm, smooth, [Score=148, Expect=1e-38]} {Celegans: WBGene00016624, C44B7.2, [Score=100, Expect=3e-22]} {Smed: dd_Smed_v6_1327_0_1, dd_Smed_v6_1327_0_1, [Score=188, Expect=6e-53]} {RNA1509_51231} {RNA1310_13979} {RNA815_16343}

Cumulative graph for MligTC455_16494

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	2.253	1.266	0.99988	1.00000
RegionR2	1.979	1.266	0.21914	0.58717
RegionR3	-1.165	1.266	0.99990	1.00000
RegionR4	3.473	1.266	0.13960	0.38138
RegionR5	-0.83	1.266	0.99983	1.00000
RegionR6	-1.326	1.266	1.00000	1.00000
RegionR7	-2.077	1.266	0.99982	1.00000
RegionR8	-2.306	1.266	0.99993	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.734	1.266	0.99987	1.00000
RegenerationR2	1.511	1.266	0.38171	0.80254
RegenerationR3	5.153	1.266	0.03704	0.34020
RegenerationR4	2.663	1.266	0.33935	0.77110
RegenerationR5	5.343	1.266	0.00831	0.16496
RegenerationR6	5.455	1.266	0.01878	0.16932
RegenerationBL	5.491	1.266	0.03642	0.21536
RegenerationTP	5.028	1.266	0.10263	0.49746

Genes with expression patterns similar to MligTC455_16494

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_16494	50	1.03	Mlig455_055970	Neo: - Age: -	HNRNPL	1	-	-	-	-	-	1.000	Mlig455_055970 {REF} {Length: 2835} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=105.4]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=89.8]; Occluded RNA-recognition motif [PF16842.7, score=31.8]; RRM-like domain [PF11835.10, score=21.8]} {Human: ENSG00000282947, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=172, Expect=2e-46]; ENSG00000104824, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=172, Expect=2e-46]} {Mouse: ENSMUSG00000015165, Hnrnpl, heterogeneous nuclear ribonucleoprotein L, [Score=172, Expect=1e-46]} {Dmel: FBgn0003435, sm, smooth, [Score=148, Expect=1e-38]} {Celegans: WBGene00016624, C44B7.2, [Score=100, Expect=3e-22]} {Smed: dd_Smed_v6_1327_0_1, dd_Smed_v6_1327_0_1, [Score=188, Expect=6e-53]} {RNA1509_51231} {RNA1310_13979} {RNA815_16343}
2.	MligTC455_35501	720	15	Mlig455_048410	Neo: - Age: Down-Up-Down	KDM3A	0.957	-	-	-	-	-	0.957	Mlig455_048410 {REF} {Length: 7501} {Pfam: JmjC domain, hydroxylase [PF02373.24, score=27.2]; Anti-sigma-K factor rskA [PF10099.11, score=19.5]} {Human: ENSG00000115548, KDM3A, lysine demethylase 3A, [Score=167, Expect=4e-41]; ENSG00000171988, JMJD1C, jumonji domain containing 1C, [Score=166, Expect=2e-40]; ENSG00000120733, KDM3B, lysine demethylase 3B, [Score=162, Expect=2e-39]} {Mouse: ENSMUSG00000053470, Kdm3a, lysine (K)-specific demethylase 3A, [Score=171, Expect=1e-42]} {Dmel: FBgn0037703, JHDM2, JmjC domain-containing histone demethylase 2, [Score=171, Expect=5e-43]} {Smed: dd_Smed_v6_2582_0_3, dd_Smed_v6_2582_0_3, [Score=194, Expect=9e-50]} {RNA1509_15584} {RNA1310_5965.1} {RNA815_15655.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_16494

1.03

Mlig455_055970

Neo: -

Age: -

HNRNPL

1.000

MligTC455_35501

720

Mlig455_048410

Neo: -

Age: Down-Up-Down

KDM3A

0.957

Mlig455_048410 {REF} {Length: 7501} {Pfam: JmjC domain, hydroxylase [PF02373.24, score=27.2]; Anti-sigma-K factor rskA [PF10099.11, score=19.5]} {Human: ENSG00000115548, KDM3A, lysine demethylase 3A, [Score=167, Expect=4e-41]; ENSG00000171988, JMJD1C, jumonji domain containing 1C, [Score=166, Expect=2e-40]; ENSG00000120733, KDM3B, lysine demethylase 3B, [Score=162, Expect=2e-39]} {Mouse: ENSMUSG00000053470, Kdm3a, lysine (K)-specific demethylase 3A, [Score=171, Expect=1e-42]} {Dmel: FBgn0037703, JHDM2, JmjC domain-containing histone demethylase 2, [Score=171, Expect=5e-43]} {Smed: dd_Smed_v6_2582_0_3, dd_Smed_v6_2582_0_3, [Score=194, Expect=9e-50]} {RNA1509_15584} {RNA1310_5965.1} {RNA815_15655.1}