M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_16528

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_16528 213 4.44 Mlig455_065279

Neo: -

Age: Up-Down-Down

 MADD Mlig455_065279 {REF} {Length: 2038} {Human: ENSG00000110514, MADD, MAP kinase activating death domain, [Score=69.7, Expect=2e-13]} {Mouse: ENSMUSG00000040687, Madd, MAP-kinase activating death domain, [Score=71.6, Expect=4e-14]} {Dmel: FBgn0030613, Rab3-GEF, Rab3 GDP-GTP exchange factor, [Score=60.1, Expect=3e-10]} {Celegans: WBGene00000086, aex-3, MAP kinase-activating death domain protein, [Score=63.9, Expect=9e-12]} {Smed: dd_Smed_v6_8355_0_12, dd_Smed_v6_8355_0_12, [Score=66.6, Expect=9e-13]} {RNA1509_32884} {RNA1310_25902} {RNA815_13149}

Cumulative graph for MligTC455_16528

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.413 2.616 0.81186 1.00000
RegionR2 1.225 2.616 0.10954 0.40887
RegionR3 -0.81 2.616 0.13462 0.62833
RegionR4 -0.224 2.616 0.79838 1.00000
RegionR5 -1.248 2.616 0.01430 0.07547
RegionR6 -0.582 2.616 0.29446 0.88588
RegionR7 0.535 2.616 0.46711 1.00000
RegionR8 0.692 2.616 0.41946 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.246 2.616 0.94069 1.00000
RegenerationR2 -0.339 2.616 0.55515 0.89573
RegenerationR3 0.178 2.616 0.80058 0.98293
RegenerationR4 -1.05 2.616 0.17681 0.61647
RegenerationR5 0.287 2.616 0.63546 0.92468
RegenerationR6 0.063 2.616 0.92525 1.00000
RegenerationBL -1.067 2.616 0.40771 0.77693
RegenerationTP -1.625 2.616 0.10797 0.50733


Genes with expression patterns similar to MligTC455_16528

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_16528 213 4.44 Mlig455_065279

Neo: -

Age: Up-Down-Down

 MADD 5 1.000 1.000 1.000 - 1.000 1.000 Mlig455_065279 {REF} {Length: 2038} {Human: ENSG00000110514, MADD, MAP kinase activating death domain, [Score=69.7, Expect=2e-13]} {Mouse: ENSMUSG00000040687, Madd, MAP-kinase activating death domain, [Score=71.6, Expect=4e-14]} {Dmel: FBgn0030613, Rab3-GEF, Rab3 GDP-GTP exchange factor, [Score=60.1, Expect=3e-10]} {Celegans: WBGene00000086, aex-3, MAP kinase-activating death domain protein, [Score=63.9, Expect=9e-12]} {Smed: dd_Smed_v6_8355_0_12, dd_Smed_v6_8355_0_12, [Score=66.6, Expect=9e-13]} {RNA1509_32884} {RNA1310_25902} {RNA815_13149}
2. MligTC455_16529 416 8.68 Mlig455_042969, Mlig455_065311

Neo: -

Age: Up-Down-Down

 MADD 4.8 0.991 0.995 0.970 - 0.897 0.947

Mlig455_042969 {REF} {Length: 8278} {TRANSSPLICED} {Pfam: DENN (AEX-3) domain [PF02141.23, score=108.2]; uDENN domain [PF03456.20, score=52.3]} {Human: ENSG00000110514, MADD, MAP kinase activating death domain, [RH, Score=1040, Expect=0.0]} {Mouse: ENSMUSG00000040687, Madd, MAP-kinase activating death domain, [Score=1046, Expect=0.0]} {Dmel: FBgn0030613, Rab3-GEF, Rab3 GDP-GTP exchange factor, [RH, Score=499, Expect=9e-147]} {Celegans: WBGene00000086, aex-3, MAP kinase-activating death domain protein, [RH, Score=523, Expect=6e-160]} {Smed: dd_Smed_v6_8355_0_9, dd_Smed_v6_8355_0_9, [Score=1172, Expect=0.0]} {RNA1509_32942} {RNA1310_808.3} {RNA815_6761.1}

Mlig455_065311 {REF} {Length: 6827} {TRANSSPLICED} {Pfam: DENN (AEX-3) domain [PF02141.23, score=108.1]; uDENN domain [PF03456.20, score=52.1]} {Human: ENSG00000110514, MADD, MAP kinase activating death domain, [Score=711, Expect=0.0]} {Mouse: ENSMUSG00000040687, Madd, MAP-kinase activating death domain, [Score=711, Expect=0.0]} {Dmel: FBgn0030613, Rab3-GEF, Rab3 GDP-GTP exchange factor, [RH, Score=499, Expect=2e-146]} {Celegans: WBGene00000086, aex-3, MAP kinase-activating death domain protein, [RH, Score=525, Expect=9e-160]} {Smed: dd_Smed_v6_8355_0_15, dd_Smed_v6_8355_0_15, [RH, Score=811, Expect=0.0]} {RNA1509_32942} {RNA1310_808.3} {RNA815_8678}
3. MligTC455_25677 200 4.18 Mlig455_037357

Neo: -

Age: logFC(26M/2M)=0.427

 COL24A1 1.719 - - 0.971 - 0.748 - Mlig455_037357 {REF} {Length: 7518} {tRNA: Glu(CTC), score=74.2} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=450.4]; Fibrillar collagen C-terminal domain [PF01410.20, score=139.5]; von Willebrand factor type C domain [PF00093.20, score=28.3]} {Human: ENSG00000171502, COL24A1, collagen type XXIV alpha 1 chain, [Score=366, Expect=1e-103]} {Mouse: ENSMUSG00000029661, Col1a2, collagen, type I, alpha 2, [Score=370, Expect=3e-106]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [Score=341, Expect=1e-95]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [Score=307, Expect=4e-85]} {Smed: dd_Smed_v6_8075_0_1, dd_Smed_v6_8075_0_1, [Score=466, Expect=1e-139]} {RNA1509_12827, RNA1509_6841} {RNA1310_1385.1, RNA1509_12827} {RNA1509_12827, RNA815_7264}
4. MligTC455_42396 33 0.68 Mlig455_046642

Neo: -

Age: -

 1.678 - - 0.973 - 0.705 - Mlig455_046642 {REF} {Length: 3316} {TRANSSPLICED} {RNA1509_47486} {RNA1310_45171} {RNA815_36801}
5. MligTC455_23522 537 11.19 Mlig455_039829

Neo: -

Age: -

 ESRRA 1.666 - - - - 0.712 0.954 Mlig455_039829 {REF} {Length: 5547} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=96.9]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=19.1]} {Human: ENSG00000173153, ESRRA, estrogen related receptor alpha, [RH, Score=161, Expect=2e-43]; ENSG00000119715, ESRRB, estrogen related receptor beta, [RH, Score=158, Expect=5e-42]} {Mouse: ENSMUSG00000024955, Esrra, estrogen related receptor, alpha, [RH, Score=162, Expect=7e-44]} {Dmel: FBgn0035849, ERR, estrogen-related receptor, [Score=154, Expect=1e-40]} {Celegans: WBGene00003623, nhr-25, Nuclear hormone receptor family member nhr-25, [Score=123, Expect=9e-30]} {Smed: dd_Smed_v6_12699_0_1, dd_Smed_v6_12699_0_1, [Score=110, Expect=1e-25]} {RNA1509_14376, RNA1509_50302, RNA1509_53182, RNA1509_57190} {RNA1310_15723.1, RNA1509_14376, RNA1509_50302, RNA1509_53182, RNA1509_57190} {RNA1509_14376, RNA1509_50302, RNA1509_53182, RNA1509_57190, RNA815_2007}
6. MligTC455_36128 429 8.94 Mlig455_066220

Neo: -

Age: Up-Down-Down

 MADD 1.661 - - - - 0.705 0.956 Mlig455_066220 {REF} {Length: 5775} {TRANSSPLICED} {Pfam: DENN (AEX-3) domain [PF02141.23, score=101.4]; uDENN domain [PF03456.20, score=39.7]} {Human: ENSG00000110514, MADD, MAP kinase activating death domain, [Score=341, Expect=4e-96]} {Mouse: ENSMUSG00000040687, Madd, MAP-kinase activating death domain, [Score=339, Expect=6e-96]} {Dmel: FBgn0030613, Rab3-GEF, Rab3 GDP-GTP exchange factor, [Score=337, Expect=6e-95]} {Celegans: WBGene00000086, aex-3, MAP kinase-activating death domain protein, [Score=378, Expect=7e-110]} {Smed: dd_Smed_v6_8355_0_1, dd_Smed_v6_8355_0_1, [Score=436, Expect=2e-137]} {RNA1509_19227} {RNA1310_4163, RNA1509_19227} {RNA1509_19227, RNA815_25214}
7. MligTC455_41723 46 0.97 Mlig455_001714

Neo: -

Age: -

 0.974 - - 0.974 - - - Mlig455_001714 {REF} {Length: 1881} {RNA1310_22665} {RNA815_13308}
8. MligTC455_53011 75 1.56 Mlig455_011621

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_011621 {REF} {Length: 819} {TRANSSPLICED} {RNA1509_24093} {RNA1310_59695} {RNA815_13022.1}
9. MligTC455_02646 161 3.36 Mlig455_046275

Neo: -

Age: -

 0.965 - - 0.965 - - - Mlig455_046275 {REF} {Length: 460} {Celegans: WBGene00022511, ZC53.4, [Score=95.9, Expect=6e-24]} {Smed: dd_Smed_v6_15026_0_1, dd_Smed_v6_15026_0_1, [Score=65.5, Expect=8e-15]} {RNA1509_28643} {RNA1310_576.1} {RNA815_1671.1}
10. MligTC455_15378 15 0.32 Mlig455_035283

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_035283 {REF} {Length: 1122} {NoTransDecoderORF} {RNA1310_141463}
11. MligTC455_30785 505 10.52 Mlig455_009932, Mlig455_017648, Mlig455_019976, Mlig455_020104, Mlig455_024677, Mlig455_038136, Mlig455_052395, Mlig455_056908, Mlig455_061056, Mlig455_070767

Neo: Germline

Age: Up-Down-Down

Region-enriched R2: 2.869/0.00325

 0.961 - - 0.961 - - -

Mlig455_009932 {REF} {Length: 1309} {RNA1509_47681} {RNA1310_32012} {RNA815_16629}

Mlig455_017648 {REF} {Length: 4039} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=144.9]; RNase H [PF00075.26, score=60.8]; Reverse transcriptase-like [PF13456.8, score=27.9]} {RNA1509_31798} {RNA1310_13518} {RNA815_23683}

Mlig455_019976 {REF} {Length: 444} {NoTransDecoderORF} {RNA1310_34124} {RNA815_16629}

Mlig455_020104 {REF} {Length: 4349} {Pfam: FTR, proximal lobe [PF02741.17, score=26.0]; Rifampin ADP-ribosyl transferase [PF12120.10, score=22.5]} {RNA1509_34937} {RNA1310_3298} {RNA815_7759.1}

Mlig455_024677 {REF} {Length: 4287} {RNA1509_34937} {RNA1310_3298} {RNA815_7759.1}

Mlig455_038136 {REF} {Length: 186} {NoTransDecoderORF} {RNA1509_34937} {RNA1310_3298}

Mlig455_052395 {REF} {Length: 928} {Pfam: FTR, proximal lobe [PF02741.17, score=19.9]} {RNA1509_47681} {RNA1310_14160} {RNA815_45798}

Mlig455_056908 {REF} {Length: 4573} {TRANSSPLICED} {Pfam: FTR, proximal lobe [PF02741.17, score=31.0]} {RNA1509_34937} {RNA1310_3298} {RNA815_7759.1}

Mlig455_061056 {REF} {Length: 1663} {RNA1509_22642} {RNA1310_14160} {RNA815_16629}

Mlig455_070767 {REF} {Length: 5192} {Pfam: FTR, proximal lobe [PF02741.17, score=31.2]; 60s Acidic ribosomal protein [PF00428.21, score=22.9]; Lipid membrane protein of large eukaryotic DNA viruses [PF02442.19, score=19.9]; UPF0524 of C3orf70 [PF15823.7, score=18.7]} {RNA1509_34937} {RNA1310_3298} {RNA815_7759.1}
12. MligTC455_33128 1820 37.91 Mlig455_065593

Neo: -

Age: -

 0.959 - - - - - 0.959 Mlig455_065593 {REF} {Length: 2622} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=38.8]; HMG-box domain [PF09011.12, score=32.9]} {RNA1509_16997, RNA1509_20373, RNA1509_22468, RNA1509_29220, RNA1509_5450} {RNA1310_21659.1, RNA1509_16997, RNA1509_20373, RNA1509_22468, RNA1509_29220, RNA1509_5450} {RNA1509_16997, RNA1509_20373, RNA1509_22468, RNA1509_29220, RNA1509_5450, RNA815_736.1}
13. MligTC455_20158 50 1.04 Mlig455_026158

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_026158 {REF} {Length: 4470} {NoTransDecoderORF} {RNA1509_40591} {RNA1310_53576, RNA1509_40591} {RNA1509_40591, RNA815_16258}
14. MligTC455_51503 905 18.85 Mlig455_061287, Mlig455_062672

Neo: -

Age: -

 SON 0.958 - - - - - 0.958

Mlig455_061287 {REF} {Length: 5365} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=27.0]} {RNA1509_18023} {RNA1310_4715.1} {RNA815_16390}

Mlig455_062672 {REF} {Length: 5238} {Pfam: HMG (high mobility group) box [PF00505.21, score=36.2]; HMG-box domain [PF09011.12, score=29.6]} {Human: ENSG00000159140, SON, SON DNA binding protein, [Score=53.1, Expect=2e-06]; ENSG00000140382, HMG20A, high mobility group 20A, [Score=51.6, Expect=3e-06]} {Mouse: ENSMUSG00000022961, Son, Son DNA binding protein, [Score=55.5, Expect=2e-07]} {RNA1509_18023, RNA1509_30819, RNA1509_48158, RNA1509_56852} {RNA1310_4715.1, RNA1509_18023, RNA1509_30819, RNA1509_48158, RNA1509_56852} {RNA1509_18023, RNA1509_30819, RNA1509_48158, RNA1509_56852, RNA815_16390}
15. MligTC455_30933 46 0.96 Mlig455_041425

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_041425 {REF} {Length: 934} {TRANSSPLICED} {RNA1509_34308, RNA1509_58108} {RNA1310_52601, RNA1509_58108} {RNA1509_58108, RNA815_25392}
16. MligTC455_47544 42 0.88 Mlig455_055595, Mlig455_055624

Neo: -

Age: -

 RASL10B 0.951 - - 0.951 - - -

Mlig455_055595 {REF} {Length: 1887} {Pfam: Ras family [PF00071.24, score=75.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=34.0]; AAA ATPase domain [PF13191.8, score=20.2]} {Human: ENSG00000270885, RASL10B, RAS like family 10 member B, [Score=151, Expect=2e-44]} {Mouse: ENSMUSG00000020684, Rasl10b, RAS-like, family 10, member B, [Score=151, Expect=2e-44]} {Dmel: FBgn0037326, CG14669, [Score=112, Expect=1e-28]} {Celegans: WBGene00004307, rap-1, Ras-related protein Rap-1, [Score=54.7, Expect=7e-09]} {Smed: dd_Smed_v6_13540_0_1, dd_Smed_v6_13540_0_1, [Score=186, Expect=3e-57]} {RNA1310_59421} {RNA815_58204}

Mlig455_055624 {REF} {Length: 1840} {Pfam: Ras family [PF00071.24, score=74.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=33.3]; AAA ATPase domain [PF13191.8, score=19.8]} {Human: ENSG00000270885, RASL10B, RAS like family 10 member B, [Score=150, Expect=4e-44]} {Mouse: ENSMUSG00000020684, Rasl10b, RAS-like, family 10, member B, [Score=152, Expect=6e-45]} {Dmel: FBgn0037326, CG14669, [Score=111, Expect=2e-28]} {Celegans: WBGene00004307, rap-1, Ras-related protein Rap-1, [Score=56.2, Expect=2e-09]} {Smed: dd_Smed_v6_13540_0_1, dd_Smed_v6_13540_0_1, [Score=186, Expect=3e-57]} {RNA1310_59421} {RNA815_58204}
17. MligTC455_29383 55 1.16 Mlig455_052508

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_052508 {REF} {Length: 7465} {RNA1509_38155} {RNA1310_23095} {RNA815_16176.1}
18. MligTC455_40745 906 18.88 Mlig455_047848, Mlig455_047918

Neo: -

Age: Up-Down-Down

 TTPAL 0.95 - - - - - 0.950

Mlig455_047848 {REF} {Length: 4283} {TRANSSPLICED} {Pfam: CRAL/TRIO domain [PF00650.22, score=77.6]; CRAL/TRIO, N-terminal domain [PF03765.17, score=22.8]} {Human: ENSG00000124120, TTPAL, alpha tocopherol transfer protein like, [RH, Score=135, Expect=2e-36]} {Mouse: ENSMUSG00000017679, Ttpal, tocopherol (alpha) transfer protein-like, [RH, Score=139, Expect=4e-38]; ENSMUSG00000039194, Rlbp1, retinaldehyde binding protein 1, [RH, Score=133, Expect=9e-36]} {Dmel: FBgn0036289, CG10657, [Score=125, Expect=4e-33]} {RNA1509_23560} {RNA1310_23879} {RNA815_11361}

Mlig455_047918 {REF} {Length: 4039} {TRANSSPLICED} {Pfam: CRAL/TRIO domain [PF00650.22, score=77.6]; CRAL/TRIO, N-terminal domain [PF03765.17, score=22.8]} {Human: ENSG00000124120, TTPAL, alpha tocopherol transfer protein like, [RH, Score=135, Expect=2e-36]} {Mouse: ENSMUSG00000017679, Ttpal, tocopherol (alpha) transfer protein-like, [RH, Score=139, Expect=4e-38]; ENSMUSG00000039194, Rlbp1, retinaldehyde binding protein 1, [RH, Score=133, Expect=9e-36]} {Dmel: FBgn0036289, CG10657, [Score=125, Expect=4e-33]} {RNA1509_23560} {RNA1310_23879, RNA1509_23560} {RNA1509_23560, RNA815_11361}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA