TomoSeq data search

Data search

Results for MligTC455_16545

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_16545

13758

286.63

Mlig455_012597

Neo: -

Age: -

HMCN1

Mlig455_012597 {REF} {Length: 2280} {Pfam: von Willebrand factor type A domain [PF13519.8, score=65.7]; von Willebrand factor type A domain [PF00092.30, score=49.7]; von Willebrand factor type A domain [PF13768.8, score=25.7]; VWA domain containing CoxE-like protein [PF05762.16, score=21.4]} {Human: ENSG00000143341, HMCN1, hemicentin 1, [Score=89.7, Expect=9e-18]; ENSG00000148357, HMCN2, hemicentin 2, [Score=85.5, Expect=2e-16]} {Mouse: ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=89.4, Expect=7e-18]} {Celegans: WBGene00001863, him-4, Hemicentin; High Incidence of Males (Increased X chromosome loss), [Score=99.0, Expect=4e-21]} {Smed: dd_Smed_v6_1161_0_1, dd_Smed_v6_1161_0_1, [Score=89.7, Expect=3e-18]} {RNA1509_31704} {RNA1310_12097.1} {RNA815_2254.2}

Cumulative graph for MligTC455_16545

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.512	8.196	0.00328	0.18441
RegionR2	-0.418	8.196	0.15135	0.48602
RegionR3	-0.448	8.196	0.08451	0.51460
RegionR4	0.645	8.196	0.03776	0.15952
RegionR5	-0.178	8.196	0.49064	0.85390
RegionR6	0.131	8.196	0.60461	1.00000
RegionR7	0.782	8.196	0.00193	0.05534
RegionR8	0.997	8.196	0.00019	0.01393

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.03	8.196	0.08407	0.78241
RegenerationR2	0.605	8.196	0.05200	0.37620
RegenerationR3	0.543	8.196	0.09453	0.49430
RegenerationR4	0.643	8.196	0.05597	0.37962
RegenerationR5	1.128	8.196	0.00043	0.03323
RegenerationR6	0.534	8.196	0.09708	0.38750
RegenerationBL	0.163	8.196	0.55128	0.90808
RegenerationTP	0.354	8.196	0.22102	0.66467

Genes with expression patterns similar to MligTC455_16545

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_16545	13758	286.63	Mlig455_012597	Neo: - Age: -	HMCN1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_012597 {REF} {Length: 2280} {Pfam: von Willebrand factor type A domain [PF13519.8, score=65.7]; von Willebrand factor type A domain [PF00092.30, score=49.7]; von Willebrand factor type A domain [PF13768.8, score=25.7]; VWA domain containing CoxE-like protein [PF05762.16, score=21.4]} {Human: ENSG00000143341, HMCN1, hemicentin 1, [Score=89.7, Expect=9e-18]; ENSG00000148357, HMCN2, hemicentin 2, [Score=85.5, Expect=2e-16]} {Mouse: ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=89.4, Expect=7e-18]} {Celegans: WBGene00001863, him-4, Hemicentin; High Incidence of Males (Increased X chromosome loss), [Score=99.0, Expect=4e-21]} {Smed: dd_Smed_v6_1161_0_1, dd_Smed_v6_1161_0_1, [Score=89.7, Expect=3e-18]} {RNA1509_31704} {RNA1310_12097.1} {RNA815_2254.2}
2.	MligTC455_16544	13972	291.08	Mlig455_066559	Neo: - Age: -	HMCN1	5.519	0.984	0.809	0.979	0.923	0.967	0.857	Mlig455_066559 {REF} {Length: 2104} {Pfam: von Willebrand factor type A domain [PF00092.30, score=36.8]; von Willebrand factor type A domain [PF13519.8, score=35.6]; von Willebrand factor type A domain [PF13768.8, score=24.2]; VWA domain containing CoxE-like protein [PF05762.16, score=19.4]} {Human: ENSG00000143341, HMCN1, hemicentin 1, [Score=85.5, Expect=2e-17]; ENSG00000238203, VWA7, von Willebrand factor A domain containing 7, [Score=84.3, Expect=4e-17]; ENSG00000234433, VWA7, von Willebrand factor A domain containing 7, [Score=84.3, Expect=4e-17]; ENSG00000223757, VWA7, von Willebrand factor A domain containing 7, [Score=84.3, Expect=4e-17]; ENSG00000230048, VWA7, von Willebrand factor A domain containing 7, [Score=84.3, Expect=4e-17]; ENSG00000204396, VWA7, von Willebrand factor A domain containing 7, [Score=84.3, Expect=4e-17]; ENSG00000227144, VWA7, von Willebrand factor A domain containing 7, [Score=84.0, Expect=4e-17]; ENSG00000148357, HMCN2, hemicentin 2, [Score=82.8, Expect=2e-16]} {Mouse: ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=85.5, Expect=2e-17]} {Celegans: WBGene00001863, him-4, Hemicentin; High Incidence of Males (Increased X chromosome loss), [Score=100, Expect=1e-22]} {Smed: dd_Smed_v6_1161_0_1, dd_Smed_v6_1161_0_1, [Score=78.2, Expect=1e-15]} {RNA1509_6232} {RNA1310_12097.1} {RNA815_2254.1}
3.	MligTC455_16543	20725	431.78	Mlig455_012510	Neo: - Age: -	HMCN1	3.52	0.975	-	0.925	0.870	0.750	-	Mlig455_012510 {REF} {Length: 2322} {Pfam: von Willebrand factor type A domain [PF13519.8, score=63.9]; von Willebrand factor type A domain [PF00092.30, score=48.3]; von Willebrand factor type A domain [PF13768.8, score=26.7]; VWA domain containing CoxE-like protein [PF05762.16, score=18.6]} {Human: ENSG00000143341, HMCN1, hemicentin 1, [Score=90.1, Expect=3e-18]; ENSG00000148357, HMCN2, hemicentin 2, [Score=88.2, Expect=1e-17]} {Mouse: ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=89.7, Expect=3e-18]; ENSMUSG00000055632, Hmcn2, hemicentin 2, [Score=87.0, Expect=2e-17]} {Celegans: WBGene00001863, him-4, Hemicentin; High Incidence of Males (Increased X chromosome loss), [Score=99.8, Expect=1e-21]} {Smed: dd_Smed_v6_1161_0_1, dd_Smed_v6_1161_0_1, [Score=92.0, Expect=2e-19]} {RNA1509_27605, RNA1509_29065, RNA1509_38975, RNA1509_42161, RNA1509_5217, RNA1509_6232} {RNA1310_12097.1, RNA1509_27605, RNA1509_29065, RNA1509_38975, RNA1509_42161, RNA1509_5217, RNA1509_6232} {RNA1509_27605, RNA1509_29065, RNA1509_38975, RNA1509_42161, RNA1509_5217, RNA1509_6232, RNA815_2254.1}
4.	MligTC455_47175	3044	63.41	Mlig455_023728	Neo: - Age: Down-Down-Up, logFC(26M/2M)=0.402 Regeneration-downregulated BL: -2.528 Regeneration-depleted BL: -2.528		3.288	0.954	-	0.839	0.749	0.746	-	Mlig455_023728 {REF} {Length: 1425} {RNA1509_15523, RNA1509_16568, RNA1509_25232, RNA1509_35730, RNA1509_8550} {RNA1310_32152.1, RNA1509_15523, RNA1509_16568, RNA1509_25232, RNA1509_35730, RNA1509_8550} {RNA1509_15523, RNA1509_16568, RNA1509_25232, RNA1509_35730, RNA1509_8550, RNA815_13976.1}
5.	MligTC455_47239	197	4.11	Mlig455_010867	Neo: - Age: -		0.956	-	-	-	-	0.956	-	Mlig455_010867 {REF} {Length: 569} {NoTransDecoderORF} {RNA1509_22398} {RNA1310_25370}
6.	MligTC455_50615	204	4.25	Mlig455_056431	Neo: - Age: -	GRK3	0.955	0.955	-	-	-	-	-	Mlig455_056431 {REF} {Length: 4903} {Pfam: Protein kinase domain [PF00069.27, score=230.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=94.3]; Regulator of G protein signaling domain [PF00615.21, score=52.7]} {Human: ENSG00000100077, GRK3, G protein-coupled receptor kinase 3, [RH, Score=914, Expect=0.0]; ENSG00000173020, GRK2, G protein-coupled receptor kinase 2, [RH, Score=908, Expect=0.0]} {Mouse: ENSMUSG00000024858, Grk2, G protein-coupled receptor kinase 2, [RH, Score=908, Expect=0.0]; ENSMUSG00000042249, Grk3, G protein-coupled receptor kinase 3, [RH, Score=906, Expect=0.0]} {Dmel: FBgn0260798, Gprk1, G protein-coupled receptor kinase 1, [RH, Score=907, Expect=0.0]} {Celegans: WBGene00001709, grk-2, G protein-coupled receptor kinase 2, [RH, Score=887, Expect=0.0]} {Smed: dd_Smed_v6_6480_0_1, dd_Smed_v6_6480_0_1, [RH, Score=1042, Expect=0.0]} {RNA1509_18859, RNA1509_46485} {RNA1310_7105, RNA1509_18859, RNA1509_46485} {RNA1509_18859, RNA1509_46485, RNA815_2886}
7.	MligTC455_31902	293	6.11	Mlig455_022360	Neo: - Age: - Region-enriched R2: 3.717/0.04491	WSCD2	0.954	-	-	-	-	0.954	-	Mlig455_022360 {REF} {Length: 5720} {Pfam: WSC domain [PF01822.21, score=54.8]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [Score=48.1, Expect=5e-06]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=48.5, Expect=2e-06]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=51.6, Expect=1e-07]} {RNA1509_31473} {RNA1310_51110.1} {RNA815_20842.1}

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