M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_16810

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_16810 1119 23.32 Mlig455_009682, Mlig455_058330

Neo: -

Age: -

Region-enriched R5: 1.274/0.00007

Regeneration-upregulated BL: 1.481

Regeneration-enriched BL: 1.481

 DUSP19

Mlig455_009682 {REF} {Length: 2568} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=80.6]} {Human: ENSG00000162999, DUSP19, dual specificity phosphatase 19, [Score=105, Expect=3e-27]} {Mouse: ENSMUSG00000027001, Dusp19, dual specificity phosphatase 19, [Score=102, Expect=3e-26]} {Dmel: FBgn0083992, Mkp, MAP kinase-specific phosphatase, [Score=90.9, Expect=4e-22]} {Celegans: WBGene00021867, Y54F10BM.13, [RH, Score=110, Expect=2e-29]} {Smed: dd_Smed_v6_6194_0_1, dd_Smed_v6_6194_0_1, [RH, Score=99.4, Expect=2e-25]} {RNA1509_33875} {RNA1310_14755} {RNA815_23141}

Mlig455_058330 {REF} {Length: 1750} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=80.8]} {Human: ENSG00000162999, DUSP19, dual specificity phosphatase 19, [Score=105, Expect=4e-27]} {Mouse: ENSMUSG00000027001, Dusp19, dual specificity phosphatase 19, [Score=102, Expect=3e-26]} {Dmel: FBgn0083992, Mkp, MAP kinase-specific phosphatase, [Score=92.8, Expect=6e-23]} {Celegans: WBGene00021867, Y54F10BM.13, [RH, Score=110, Expect=3e-29]} {Smed: dd_Smed_v6_6194_0_1, dd_Smed_v6_6194_0_1, [RH, Score=101, Expect=2e-26]} {RNA1509_33875} {RNA1310_14755} {RNA815_23141}

Cumulative graph for MligTC455_16810

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.962 4.769 0.09061 0.64788
RegionR2 0.089 4.769 0.82574 1.00000
RegionR3 0.192 4.769 0.56322 1.00000
RegionR4 0.591 4.769 0.10147 0.31043
RegionR5 1.274 4.769 0.00000 0.00007
RegionR6 -0.126 4.769 0.72655 1.00000
RegionR7 -0.505 4.769 0.29820 0.93278
RegionR8 0.447 4.769 0.37626 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.192 4.769 0.46750 1.00000
RegenerationR2 0.309 4.769 0.30985 0.75000
RegenerationR3 -0.135 4.769 0.69275 0.94547
RegenerationR4 -0.091 4.769 0.78442 0.98235
RegenerationR5 -0.098 4.769 0.73689 0.96705
RegenerationR6 0.675 4.769 0.05210 0.28615
RegenerationBL 1.481 4.769 0.00003 0.00180 Specific for BL: 1.481
RegenerationTP -0.489 4.769 0.32778 0.77230


Genes with expression patterns similar to MligTC455_16810

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_16810 1119 23.32 Mlig455_009682, Mlig455_058330

Neo: -

Age: -

Region-enriched R5: 1.274/0.00007

Regeneration-upregulated BL: 1.481

Regeneration-enriched BL: 1.481

 DUSP19 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_009682 {REF} {Length: 2568} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=80.6]} {Human: ENSG00000162999, DUSP19, dual specificity phosphatase 19, [Score=105, Expect=3e-27]} {Mouse: ENSMUSG00000027001, Dusp19, dual specificity phosphatase 19, [Score=102, Expect=3e-26]} {Dmel: FBgn0083992, Mkp, MAP kinase-specific phosphatase, [Score=90.9, Expect=4e-22]} {Celegans: WBGene00021867, Y54F10BM.13, [RH, Score=110, Expect=2e-29]} {Smed: dd_Smed_v6_6194_0_1, dd_Smed_v6_6194_0_1, [RH, Score=99.4, Expect=2e-25]} {RNA1509_33875} {RNA1310_14755} {RNA815_23141}

Mlig455_058330 {REF} {Length: 1750} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=80.8]} {Human: ENSG00000162999, DUSP19, dual specificity phosphatase 19, [Score=105, Expect=4e-27]} {Mouse: ENSMUSG00000027001, Dusp19, dual specificity phosphatase 19, [Score=102, Expect=3e-26]} {Dmel: FBgn0083992, Mkp, MAP kinase-specific phosphatase, [Score=92.8, Expect=6e-23]} {Celegans: WBGene00021867, Y54F10BM.13, [RH, Score=110, Expect=3e-29]} {Smed: dd_Smed_v6_6194_0_1, dd_Smed_v6_6194_0_1, [RH, Score=101, Expect=2e-26]} {RNA1509_33875} {RNA1310_14755} {RNA815_23141}
2. MligTC455_16811 599 12.47 Mlig455_063056

Neo: -

Age: -

Region-enriched R5: 1.301/0.00052

 DUSP19 5.961 0.999 0.996 0.979 0.995 0.996 0.996 Mlig455_063056 {REF} {Length: 1721} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=80.8]} {Human: ENSG00000162999, DUSP19, dual specificity phosphatase 19, [Score=105, Expect=3e-27]} {Mouse: ENSMUSG00000027001, Dusp19, dual specificity phosphatase 19, [Score=102, Expect=4e-26]} {Dmel: FBgn0083992, Mkp, MAP kinase-specific phosphatase, [Score=92.8, Expect=8e-23]} {Celegans: WBGene00021867, Y54F10BM.13, [RH, Score=109, Expect=4e-29]} {Smed: dd_Smed_v6_6194_0_1, dd_Smed_v6_6194_0_1, [RH, Score=101, Expect=3e-26]} {RNA1509_33875} {RNA1310_14755} {RNA815_23141}
3. MligTC455_25618 1432 29.84 Mlig455_040593, Mlig455_040606, Mlig455_062038

Neo: Int S/G2/M

Age: -

Region-enriched R5: 2.340/0.00082

 POLDIP3 1.665 0.955 0.710 - - - -

Mlig455_040593 {REF} {Length: 2328} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=38.1]} {Human: ENSG00000100227, POLDIP3, DNA polymerase delta interacting protein 3, [Score=72.4, Expect=5e-13]} {Mouse: ENSMUSG00000041815, Poldip3, polymerase (DNA-directed), delta interacting protein 3, [Score=72.4, Expect=3e-13]} {Dmel: FBgn0030959, CG6961, [Score=56.2, Expect=4e-08]} {Smed: dd_Smed_v6_6532_0_3, dd_Smed_v6_6532_0_3, [Score=70.9, Expect=2e-13]} {RNA1509_32480, RNA1509_43306} {RNA1310_8064.2, RNA1509_32480, RNA1509_43306} {RNA1509_32480, RNA1509_43306, RNA815_20463}

Mlig455_040606 {REF} {Length: 2612} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=38.1]} {Human: ENSG00000100227, POLDIP3, DNA polymerase delta interacting protein 3, [Score=72.4, Expect=5e-13]} {Mouse: ENSMUSG00000041815, Poldip3, polymerase (DNA-directed), delta interacting protein 3, [Score=72.4, Expect=3e-13]} {Dmel: FBgn0030956, CG18259, [Score=56.2, Expect=4e-08]} {Smed: dd_Smed_v6_6532_0_3, dd_Smed_v6_6532_0_3, [Score=70.9, Expect=2e-13]} {RNA1509_43306} {RNA1310_8064.2} {RNA815_20463}

Mlig455_062038 {REF} {Length: 2345} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=39.0]} {Human: ENSG00000100227, POLDIP3, DNA polymerase delta interacting protein 3, [Score=71.6, Expect=7e-13]} {Mouse: ENSMUSG00000041815, Poldip3, polymerase (DNA-directed), delta interacting protein 3, [Score=72.0, Expect=4e-13]} {Dmel: FBgn0030959, CG6961, [Score=55.8, Expect=4e-08]} {Smed: dd_Smed_v6_6532_0_3, dd_Smed_v6_6532_0_3, [Score=70.5, Expect=3e-13]} {RNA1509_43306} {RNA1310_8064.2} {RNA815_20463}
4. MligTC455_33147 1548 32.25 Mlig455_013520

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.203

 TLCD2 0.964 - - - 0.964 - - Mlig455_013520 {REF} {Length: 4419} {Pfam: TLC domain [PF03798.18, score=67.5]} {Human: ENSG00000275246, TLCD2, TLC domain containing 2, [Score=74.3, Expect=9e-15]; ENSG00000185561, TLCD2, TLC domain containing 2, [Score=74.3, Expect=9e-15]} {Mouse: ENSMUSG00000038217, Tlcd2, TLC domain containing 2, [Score=71.6, Expect=7e-14]} {Celegans: WBGene00013407, Y63D3A.8, [Score=87.4, Expect=2e-19]} {Smed: dd_Smed_v6_6951_0_1, dd_Smed_v6_6951_0_1, [RH, Score=270, Expect=4e-90]} {RNA1509_16109, RNA1509_20305, RNA1509_48897, RNA1509_51036, RNA1509_9217} {RNA1310_11785, RNA1509_16109, RNA1509_20305, RNA1509_48897, RNA1509_51036, RNA1509_9217} {RNA1509_16109, RNA1509_20305, RNA1509_48897, RNA1509_51036, RNA1509_9217, RNA815_7980.1}
5. MligTC455_54260 652 13.57 Mlig455_057377, Mlig455_057400

Neo: Int S/G2/M

Age: Up-Down-Down

Region-enriched R5: 1.098/0.00802

 SLC27A4 0.961 - - - 0.961 - -

Mlig455_057377 {REF} {Length: 3622} {TRANSSPLICED} {Pfam: AMP-binding enzyme [PF00501.30, score=241.1]; AMP-binding enzyme C-terminal domain [PF13193.8, score=30.1]} {Human: ENSG00000167114, SLC27A4, solute carrier family 27 member 4, [RH, Score=639, Expect=0.0]; ENSG00000130304, SLC27A1, solute carrier family 27 member 1, [RH, Score=613, Expect=0.0]} {Mouse: ENSMUSG00000059316, Slc27a4, solute carrier family 27 (fatty acid transporter), member 4, [RH, Score=626, Expect=0.0]; ENSMUSG00000031808, Slc27a1, solute carrier family 27 (fatty acid transporter), member 1, [RH, Score=620, Expect=0.0]} {Dmel: FBgn0267828, Fatp, Fatty acid (long chain) transport protein, [RH, Score=592, Expect=0.0]} {Celegans: WBGene00017012, acs-22, Fatty Acid CoA Synthetase family, [RH, Score=493, Expect=5e-167]} {Smed: dd_Smed_v6_4057_0_1, dd_Smed_v6_4057_0_1, [RH, Score=632, Expect=0.0]} {RNA1509_18148} {RNA1310_5176} {RNA815_3662}

Mlig455_057400 {REF} {Length: 3622} {TRANSSPLICED} {Pfam: AMP-binding enzyme [PF00501.30, score=241.1]; AMP-binding enzyme C-terminal domain [PF13193.8, score=30.1]} {Human: ENSG00000167114, SLC27A4, solute carrier family 27 member 4, [RH, Score=639, Expect=0.0]; ENSG00000130304, SLC27A1, solute carrier family 27 member 1, [RH, Score=613, Expect=0.0]} {Mouse: ENSMUSG00000059316, Slc27a4, solute carrier family 27 (fatty acid transporter), member 4, [RH, Score=626, Expect=0.0]; ENSMUSG00000031808, Slc27a1, solute carrier family 27 (fatty acid transporter), member 1, [RH, Score=620, Expect=0.0]} {Dmel: FBgn0267828, Fatp, Fatty acid (long chain) transport protein, [RH, Score=592, Expect=0.0]} {Celegans: WBGene00017012, acs-22, Fatty Acid CoA Synthetase family, [RH, Score=493, Expect=5e-167]} {Smed: dd_Smed_v6_4057_0_1, dd_Smed_v6_4057_0_1, [RH, Score=632, Expect=0.0]} {RNA1509_18148, RNA1509_36496, RNA1509_55612} {RNA1310_5176, RNA1509_36496, RNA1509_55612} {RNA1509_36496, RNA1509_55612, RNA815_3662}
6. MligTC455_15172 200 4.16 Mlig455_016665

Neo: -

Age: Up-Down-Down

Region-enriched R4: 3.089/0.00591
Region-enriched R5: 2.401/0.00180

 GAB3 0.95 - - - 0.950 - - Mlig455_016665 {REF} {Length: 2790} {TRANSSPLICED} {Pfam: PH domain [PF00169.31, score=44.1]} {Human: ENSG00000160219, GAB3, GRB2 associated binding protein 3, [RH, Score=59.7, Expect=1e-08]; ENSG00000109458, GAB1, GRB2 associated binding protein 1, [RH, Score=58.9, Expect=2e-08]} {Mouse: ENSMUSG00000032750, Gab3, growth factor receptor bound protein 2-associated protein 3, [RH, Score=55.1, Expect=2e-07]} {Dmel: FBgn0016794, dos, daughter of sevenless, [RH, Score=56.2, Expect=7e-08]} {Smed: dd_Smed_v6_8815_0_1, dd_Smed_v6_8815_0_1, [RH, Score=50.8, Expect=2e-06]} {RNA1509_34059} {RNA1310_17916.1} {RNA815_24797}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA