M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_16919

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_16919 4977 103.69 Mlig455_013754

Neo: -

Age: -

 Mlig455_013754 {REF} {Length: 2588} {TRANSSPLICED} {Pfam: NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain [PF02317.19, score=124.0]} {RNA1509_23708, RNA1509_3244, RNA1509_39266, RNA1509_55463} {RNA1310_24410, RNA1509_23708, RNA1509_3244, RNA1509_39266, RNA1509_55463} {RNA1509_23708, RNA1509_3244, RNA1509_39266, RNA1509_55463, RNA815_9703}

Cumulative graph for MligTC455_16919

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.667 6.812 0.19048 0.82388
RegionR2 -0.372 6.812 0.23781 0.61166
RegionR3 0.139 6.812 0.59876 1.00000
RegionR4 0.83 6.812 0.00656 0.04491
RegionR5 0.544 6.812 0.03029 0.13037
RegionR6 0.413 6.812 0.11474 0.61826
RegionR7 -0.34 6.812 0.25075 0.87711
RegionR8 -0.547 6.812 0.12156 0.64123

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.391 6.812 0.57595 1.00000
RegenerationR2 -0.185 6.812 0.57227 0.90319
RegenerationR3 -0.295 6.812 0.38166 0.79143
RegenerationR4 -0.358 6.812 0.29866 0.74067
RegenerationR5 -0.261 6.812 0.42911 0.81735
RegenerationR6 -0.316 6.812 0.34111 0.68707
RegenerationBL -0.386 6.812 0.22812 0.57831
RegenerationTP -0.289 6.812 0.41310 0.83910


Genes with expression patterns similar to MligTC455_16919

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_16919 4977 103.69 Mlig455_013754

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_013754 {REF} {Length: 2588} {TRANSSPLICED} {Pfam: NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain [PF02317.19, score=124.0]} {RNA1509_23708, RNA1509_3244, RNA1509_39266, RNA1509_55463} {RNA1310_24410, RNA1509_23708, RNA1509_3244, RNA1509_39266, RNA1509_55463} {RNA1509_23708, RNA1509_3244, RNA1509_39266, RNA1509_55463, RNA815_9703}
2. MligTC455_31923 2399 49.97 Mlig455_063242

Neo: -

Age: -

 0.966 - - - 0.966 - - Mlig455_063242 {REF} {Length: 267} {NoTransDecoderORF} {RNA1509_7963} {RNA1310_91006} {RNA815_37647.1}
3. MligTC455_16577 343 7.14 Mlig455_070068

Neo: -

Age: -

 DHODH 0.956 - - - 0.956 - - Mlig455_070068 {REF} {Length: 1382} {TRANSSPLICED} {Pfam: Dihydroorotate dehydrogenase [PF01180.23, score=87.5]} {Human: ENSG00000102967, DHODH, dihydroorotate dehydrogenase (quinone), [Score=187, Expect=3e-55]} {Mouse: ENSMUSG00000031730, Dhodh, dihydroorotate dehydrogenase, [Score=187, Expect=1e-55]} {Dmel: FBgn0000447, Dhod, Dihydroorotate dehydrogenase, [Score=153, Expect=1e-42]} {Celegans: WBGene00020932, dhod-1, Dihydroorotate dehydrogenase (quinone), mitochondrial, [Score=163, Expect=2e-46]} {Smed: dd_Smed_v6_4266_0_1, dd_Smed_v6_4266_0_1, [Score=154, Expect=2e-43]} {RNA1509_20273} {RNA1310_13343} {RNA815_6571}
4. MligTC455_16576 683 14.22 Mlig455_041041, Mlig455_041144

Neo: Neoblast, stringent

Age: -

 DHODH 0.954 - - - 0.954 - -

Mlig455_041041 {REF} {Length: 2874} {Pfam: Dihydroorotate dehydrogenase [PF01180.23, score=298.4]} {Human: ENSG00000102967, DHODH, dihydroorotate dehydrogenase (quinone), [RH, Score=363, Expect=2e-122]} {Mouse: ENSMUSG00000031730, Dhodh, dihydroorotate dehydrogenase, [RH, Score=360, Expect=8e-122]} {Dmel: FBgn0000447, Dhod, Dihydroorotate dehydrogenase, [RH, Score=328, Expect=6e-109]} {Celegans: WBGene00020932, dhod-1, Dihydroorotate dehydrogenase (quinone), mitochondrial, [RH, Score=342, Expect=2e-114]} {Smed: dd_Smed_v6_4266_0_1, dd_Smed_v6_4266_0_1, [RH, Score=320, Expect=2e-106]} {RNA1509_20273} {RNA1310_7736} {RNA815_6571}

Mlig455_041144 {REF} {Length: 2061} {Pfam: Dihydroorotate dehydrogenase [PF01180.23, score=299.8]} {Human: ENSG00000102967, DHODH, dihydroorotate dehydrogenase (quinone), [RH, Score=364, Expect=6e-123]} {Mouse: ENSMUSG00000031730, Dhodh, dihydroorotate dehydrogenase, [RH, Score=362, Expect=2e-122]} {Dmel: FBgn0000447, Dhod, Dihydroorotate dehydrogenase, [RH, Score=330, Expect=9e-110]} {Celegans: WBGene00020932, dhod-1, Dihydroorotate dehydrogenase (quinone), mitochondrial, [RH, Score=339, Expect=1e-113]} {Smed: dd_Smed_v6_4266_0_1, dd_Smed_v6_4266_0_1, [RH, Score=317, Expect=4e-105]} {RNA1509_20273} {RNA1310_13343} {RNA815_6571}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA