M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_17230

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17230 1718 35.80 Mlig455_016773

Neo: -

Age: -

 DNAJB11 Mlig455_016773 {REF} {Length: 2685} {Pfam: DnaJ C terminal domain [PF01556.20, score=119.5]; DnaJ domain [PF00226.33, score=92.2]} {Human: ENSG00000090520, DNAJB11, DnaJ heat shock protein family (Hsp40) member B11, [RH, Score=458, Expect=5e-162]} {Mouse: ENSMUSG00000004460, Dnajb11, DnaJ heat shock protein family (Hsp40) member B11, [RH, Score=454, Expect=1e-160]} {Dmel: FBgn0031256, shv, shriveled, [RH, Score=441, Expect=1e-155]} {Celegans: WBGene00001038, dnj-20, DnaJ homolog dnj-20, [RH, Score=387, Expect=1e-134]} {Smed: dd_Smed_v6_3460_0_1, dd_Smed_v6_3460_0_1, [RH, Score=512, Expect=0.0]} {RNA1509_20824, RNA1509_35119, RNA1509_35279, RNA1509_5811} {RNA1310_6924, RNA1509_20824, RNA1509_35119, RNA1509_35279, RNA1509_5811} {RNA1509_20824, RNA1509_35119, RNA1509_35279, RNA1509_5811, RNA815_4989}

Cumulative graph for MligTC455_17230

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.228 5.316 0.75918 1.00000
RegionR2 -0.854 5.316 0.05552 0.28248
RegionR3 -0.197 5.316 0.58407 1.00000
RegionR4 -0.182 5.316 0.65454 0.95589
RegionR5 0.781 5.316 0.01539 0.07978
RegionR6 0.218 5.316 0.54488 1.00000
RegionR7 0.381 5.316 0.33311 0.96815
RegionR8 0.082 5.316 0.87185 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.359 5.316 0.22762 0.95822
RegenerationR2 -0.135 5.316 0.76083 0.97698
RegenerationR3 -0.412 5.316 0.35633 0.77391
RegenerationR4 -0.178 5.316 0.68779 0.94832
RegenerationR5 -0.432 5.316 0.31392 0.73901
RegenerationR6 -0.026 5.316 0.95264 1.00000
RegenerationBL 0.51 5.316 0.21723 0.56340
RegenerationTP -0.62 5.316 0.20180 0.64358


Genes with expression patterns similar to MligTC455_17230

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17230 1718 35.8 Mlig455_016773

Neo: -

Age: -

 DNAJB11 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_016773 {REF} {Length: 2685} {Pfam: DnaJ C terminal domain [PF01556.20, score=119.5]; DnaJ domain [PF00226.33, score=92.2]} {Human: ENSG00000090520, DNAJB11, DnaJ heat shock protein family (Hsp40) member B11, [RH, Score=458, Expect=5e-162]} {Mouse: ENSMUSG00000004460, Dnajb11, DnaJ heat shock protein family (Hsp40) member B11, [RH, Score=454, Expect=1e-160]} {Dmel: FBgn0031256, shv, shriveled, [RH, Score=441, Expect=1e-155]} {Celegans: WBGene00001038, dnj-20, DnaJ homolog dnj-20, [RH, Score=387, Expect=1e-134]} {Smed: dd_Smed_v6_3460_0_1, dd_Smed_v6_3460_0_1, [RH, Score=512, Expect=0.0]} {RNA1509_20824, RNA1509_35119, RNA1509_35279, RNA1509_5811} {RNA1310_6924, RNA1509_20824, RNA1509_35119, RNA1509_35279, RNA1509_5811} {RNA1509_20824, RNA1509_35119, RNA1509_35279, RNA1509_5811, RNA815_4989}
2. MligTC455_35052 956 19.92 Mlig455_026883

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=0.600

Region-enriched R5: 1.591/0.00000

 1.713 0.747 - - 0.966 - - Mlig455_026883 {REF} {Length: 5250} {Pfam: OST-HTH/LOTUS domain [PF12872.9, score=18.7]} {RNA1509_18110} {RNA1310_20306} {RNA815_4730}
3. MligTC455_40292 202 4.21 Mlig455_038714, Mlig455_068409, Mlig455_071120

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.666

 0.98 - - - - 0.980 -

Mlig455_038714 {REF} {Length: 995} {RNA1310_57567} {RNA815_31878}

Mlig455_068409 {REF} {Length: 993} {RNA1310_57567} {RNA815_31878}

Mlig455_071120 {REF} {Length: 1074} {RNA1310_57567} {RNA815_31878}
4. MligTC455_32580 264 5.5 Mlig455_003632, Mlig455_003837

Neo: -

Age: -

 UFSP2 0.976 - - - - 0.976 -

Mlig455_003632 {REF} {Length: 1865} {TRANSSPLICED} {Pfam: Peptidase family C78 [PF07910.15, score=116.2]} {Human: ENSG00000109775, UFSP2, UFM1 specific peptidase 2, [Score=124, Expect=7e-30]} {Mouse: ENSMUSG00000051502, Ufsp1, UFM1-specific peptidase 1, [RH, Score=150, Expect=2e-41]} {Dmel: FBgn0050157, CG30157, [RH, Score=131, Expect=2e-34]} {Celegans: WBGene00018160, odr-8, Ufm1-specific protease, [Score=138, Expect=2e-34]} {Smed: dd_Smed_v6_11682_0_1, dd_Smed_v6_11682_0_1, [Score=128, Expect=7e-32]} {RNA1509_45487, RNA1509_52271} {RNA1310_36798, RNA1509_45487} {RNA1509_45487, RNA815_19580}

Mlig455_003837 {REF} {Length: 2794} {Pfam: Peptidase family C78 [PF07910.15, score=116.2]} {Human: ENSG00000109775, UFSP2, UFM1 specific peptidase 2, [Score=124, Expect=7e-30]} {Mouse: ENSMUSG00000051502, Ufsp1, UFM1-specific peptidase 1, [RH, Score=150, Expect=2e-41]} {Dmel: FBgn0050157, CG30157, [RH, Score=131, Expect=2e-34]} {Celegans: WBGene00018160, odr-8, Ufm1-specific protease, [Score=138, Expect=2e-34]} {Smed: dd_Smed_v6_11682_0_1, dd_Smed_v6_11682_0_1, [Score=128, Expect=7e-32]} {RNA1509_32165, RNA1509_52271} {RNA1310_13450, RNA1509_52271} {RNA1509_52271, RNA815_5462.1}
5. MligTC455_32131 186 3.87 Mlig455_055913, Mlig455_068199

Neo: Int S/G2/M

Age: -

Region-enriched R4: 3.286/0.00889
Region-enriched R5: 2.343/0.02293

 0.972 - - - 0.972 - -

Mlig455_055913 {REF} {Length: 897} {RNA1509_2412} {RNA1310_51953} {RNA815_22474.2}

Mlig455_068199 {REF} {Length: 2579} {RNA1509_30857} {RNA1310_15375} {RNA815_7572}
6. MligTC455_36342 876 18.26 Mlig455_067427, Mlig455_069562

Neo: -

Age: Down-Up-Up

 TBX2 0.971 - - - 0.971 - -

Mlig455_067427 {REF} {Length: 4570} {Pfam: T-box [PF00907.24, score=243.9]} {Human: ENSG00000121068, TBX2, T-box 2, [Score=258, Expect=7e-79]; ENSG00000135111, TBX3, T-box 3, [Score=254, Expect=2e-77]} {Mouse: ENSMUSG00000000093, Tbx2, T-box 2, [Score=257, Expect=7e-79]; ENSMUSG00000018604, Tbx3, T-box 3, [Score=254, Expect=1e-77]} {Dmel: FBgn0000179, bi, bifid, [Score=256, Expect=9e-77]} {Celegans: WBGene00006543, tbx-2, T-box protein 2, [Score=242, Expect=3e-76]} {Smed: dd_Smed_v6_11693_0_1, dd_Smed_v6_11693_0_1, [Score=254, Expect=7e-79]} {RNA1509_22203} {RNA1310_19638, RNA1509_22203} {RNA1509_22203, RNA815_9309}

Mlig455_069562 {REF} {Length: 2538} {Pfam: T-box [PF00907.24, score=243.9]} {Human: ENSG00000121068, TBX2, T-box 2, [Score=258, Expect=7e-79]; ENSG00000135111, TBX3, T-box 3, [Score=254, Expect=2e-77]} {Mouse: ENSMUSG00000000093, Tbx2, T-box 2, [Score=257, Expect=7e-79]; ENSMUSG00000018604, Tbx3, T-box 3, [Score=254, Expect=1e-77]} {Dmel: FBgn0000179, bi, bifid, [Score=256, Expect=8e-77]} {Celegans: WBGene00006543, tbx-2, T-box protein 2, [Score=242, Expect=3e-76]} {Smed: dd_Smed_v6_11693_0_1, dd_Smed_v6_11693_0_1, [Score=254, Expect=8e-79]} {RNA1509_22203} {RNA1310_19638} {RNA815_9309}
7. MligTC455_17935 34 0.72 Mlig455_034763

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_034763 {REF} {Length: 821} {RNA1509_136} {RNA1310_10351.1} {RNA815_4820.1}
8. MligTC455_38336 1230 25.62 Mlig455_035927

Neo: -

Age: -

Region-enriched R5: 1.165/0.00018

 MOB3A 0.963 - - - - - 0.963 Mlig455_035927 {REF} {Length: 2778} {Pfam: Mob1/phocein family [PF03637.19, score=234.9]} {Human: ENSG00000172081, MOB3A, MOB kinase activator 3A, [RH, Score=320, Expect=4e-112]; ENSG00000120162, MOB3B, MOB kinase activator 3B, [RH, Score=319, Expect=1e-111]} {Mouse: ENSMUSG00000003348, Mob3a, MOB kinase activator 3A, [RH, Score=318, Expect=4e-111]; ENSMUSG00000073910, Mob3b, MOB kinase activator 3B, [RH, Score=318, Expect=3e-111]} {Dmel: FBgn0259482, Mob3, MOB kinase activator 3, [RH, Score=316, Expect=1e-110]} {Celegans: WBGene00020447, mob-3, [RH, Score=294, Expect=9e-102]} {Smed: dd_Smed_v6_1806_0_1, dd_Smed_v6_1806_0_1, [RH, Score=315, Expect=2e-110]} {RNA1509_12212, RNA1509_36298} {RNA1310_5976.2, RNA1509_12212, RNA1509_36298} {RNA1509_12212, RNA1509_36298, RNA815_12967}
9. MligTC455_34883 73 1.52 Mlig455_033561, Mlig455_067011, Mlig455_067050

Neo: -

Age: -

 NPEPPS 0.962 - - - - 0.962 -

Mlig455_033561 {REF} {Length: 3824} {TRANSSPLICED} {Pfam: Peptidase family M1 domain [PF01433.22, score=232.1]; ERAP1-like C-terminal domain [PF11838.10, score=125.2]; Peptidase M1 N-terminal domain [PF17900.3, score=92.1]} {Human: ENSG00000141279, NPEPPS, aminopeptidase puromycin sensitive, [Score=428, Expect=5e-136]} {Mouse: ENSMUSG00000001441, Npepps, aminopeptidase puromycin sensitive, [Score=431, Expect=4e-137]} {Dmel: FBgn0261243, Psa, Puromycin sensitive aminopeptidase, [Score=431, Expect=7e-138]} {Celegans: WBGene00003914, pam-1, Aminopeptidase, [Score=320, Expect=7e-96]} {Smed: dd_Smed_v6_1249_0_1, dd_Smed_v6_1249_0_1, [Score=402, Expect=9e-127]} {RNA1509_12981} {RNA1310_4058} {RNA815_1713}

Mlig455_067011 {REF} {Length: 3472} {TRANSSPLICED} {Pfam: Peptidase family M1 domain [PF01433.22, score=231.9]; ERAP1-like C-terminal domain [PF11838.10, score=122.5]; Peptidase M1 N-terminal domain [PF17900.3, score=114.1]} {Human: ENSG00000141279, NPEPPS, aminopeptidase puromycin sensitive, [Score=449, Expect=2e-143]} {Mouse: ENSMUSG00000001441, Npepps, aminopeptidase puromycin sensitive, [Score=451, Expect=4e-144]} {Dmel: FBgn0261243, Psa, Puromycin sensitive aminopeptidase, [Score=457, Expect=6e-147]} {Celegans: WBGene00003914, pam-1, Aminopeptidase, [Score=330, Expect=3e-99]} {Smed: dd_Smed_v6_1249_0_1, dd_Smed_v6_1249_0_1, [Score=424, Expect=3e-134]} {RNA1509_12981} {RNA1310_4058} {RNA815_1713}

Mlig455_067050 {REF} {Length: 3121} {Pfam: Peptidase family M1 domain [PF01433.22, score=232.1]; ERAP1-like C-terminal domain [PF11838.10, score=117.6]; Peptidase M1 N-terminal domain [PF17900.3, score=97.9]} {Human: ENSG00000141279, NPEPPS, aminopeptidase puromycin sensitive, [Score=422, Expect=8e-134]} {Mouse: ENSMUSG00000001441, Npepps, aminopeptidase puromycin sensitive, [Score=424, Expect=1e-134]} {Dmel: FBgn0261243, Psa, Puromycin sensitive aminopeptidase, [Score=428, Expect=7e-137]} {Celegans: WBGene00003914, pam-1, Aminopeptidase, [Score=315, Expect=4e-94]} {Smed: dd_Smed_v6_1249_0_1, dd_Smed_v6_1249_0_1, [Score=405, Expect=1e-127]} {RNA1509_12981} {RNA1310_4058} {RNA815_1713}
10. MligTC455_45499 426 8.87 Mlig455_002817

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.783

 0.96 - - - 0.960 - - Mlig455_002817 {REF} {Length: 702} {NoTransDecoderORF} {RNA1509_46585} {RNA1310_59731.1} {RNA815_20911}
11. MligTC455_53589 347 7.22 Mlig455_032424

Neo: -

Age: Down-Up-Down

 CHIC2 0.957 - - - 0.957 - - Mlig455_032424 {REF} {Length: 2260} {Pfam: Golgin subfamily A member 7/ERF4 family [PF10256.11, score=43.6]} {Human: ENSG00000109220, CHIC2, cysteine rich hydrophobic domain 2, [RH, Score=160, Expect=2e-50]; ENSG00000204116, CHIC1, cysteine rich hydrophobic domain 1, [RH, Score=155, Expect=1e-47]} {Mouse: ENSMUSG00000029229, Chic2, cysteine-rich hydrophobic domain 2, [RH, Score=162, Expect=5e-51]; ENSMUSG00000031327, Chic1, cysteine-rich hydrophobic domain 1, [RH, Score=157, Expect=2e-48]} {Dmel: FBgn0046247, CG5938, [RH, Score=164, Expect=5e-52]} {Celegans: WBGene00044319, tag-266, Cysteine-rich hydrophobic protein, [RH, Score=167, Expect=3e-53]} {Smed: dd_Smed_v6_4955_0_1, dd_Smed_v6_4955_0_1, [RH, Score=126, Expect=1e-37]} {RNA1509_47197, RNA1509_59802} {RNA1310_26581.1, RNA1509_47197, RNA1509_59802} {RNA1509_47197, RNA1509_59802, RNA815_15260}
12. MligTC455_19177 1389 28.93 Mlig455_016869

Neo: -

Age: Down-Up-Down

 0.956 - - - 0.956 - - Mlig455_016869 {REF} {Length: 762} {Pfam: DBP10CT (NUC160) domain [PF08147.14, score=19.4]} {RNA1509_17722} {RNA1310_78355, RNA1509_17722} {RNA1509_17722, RNA815_41078}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA