M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_17314

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17314 169 3.53 Mlig455_053531

Neo: Neoblast, stringent

Age: Up-Down-Down

 SACS Mlig455_053531 {REF} {Length: 9527} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF3883) [PF13020.8, score=42.2]} {Human: ENSG00000151835, SACS, sacsin molecular chaperone, [Score=52.8, Expect=1e-05]} {Mouse: ENSMUSG00000048279, Sacs, sacsin, [Score=52.8, Expect=9e-06]} {Smed: dd_Smed_v6_10250_0_1, dd_Smed_v6_10250_0_1, [RH, Score=201, Expect=3e-51]} {RNA1509_10371} {RNA1310_1171} {RNA815_5724}

Cumulative graph for MligTC455_17314

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.382 2.56 0.12274 0.71667
RegionR2 0.769 2.56 0.42023 0.81199
RegionR3 0.32 2.56 0.61975 1.00000
RegionR4 0.936 2.56 0.28659 0.59604
RegionR5 1.601 2.56 0.01582 0.08138
RegionR6 0.357 2.56 0.60182 1.00000
RegionR7 -1.029 2.56 0.98381 1.00000
RegionR8 -5.337 2.56 0.07695 0.52881

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.289 2.56 0.18651 0.92717
RegenerationR2 0.632 2.56 0.34626 0.77959
RegenerationR3 0.483 2.56 0.52308 0.86849
RegenerationR4 -0.538 2.56 0.45870 0.84677
RegenerationR5 -0.469 2.56 0.43739 0.82283
RegenerationR6 1.052 2.56 0.14754 0.47053
RegenerationBL 2.773 2.56 0.06859 0.30462
RegenerationTP 1.449 2.56 0.54951 0.93247


Genes with expression patterns similar to MligTC455_17314

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17314 169 3.53 Mlig455_053531

Neo: Neoblast, stringent

Age: Up-Down-Down

 SACS 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_053531 {REF} {Length: 9527} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF3883) [PF13020.8, score=42.2]} {Human: ENSG00000151835, SACS, sacsin molecular chaperone, [Score=52.8, Expect=1e-05]} {Mouse: ENSMUSG00000048279, Sacs, sacsin, [Score=52.8, Expect=9e-06]} {Smed: dd_Smed_v6_10250_0_1, dd_Smed_v6_10250_0_1, [RH, Score=201, Expect=3e-51]} {RNA1509_10371} {RNA1310_1171} {RNA815_5724}
2. MligTC455_38467 215 4.47 Mlig455_015264

Neo: -

Age: -

 IWS1 1.727 - - - 0.971 - 0.756 Mlig455_015264 {REF} {Length: 3282} {TRANSSPLICED} {Pfam: TFIIS helical bundle-like domain [PF08711.13, score=39.0]; Cornifin (SPRR) family [PF02389.17, score=20.9]} {Human: ENSG00000163166, IWS1, IWS1, SUPT6H interacting protein, [RH, Score=281, Expect=3e-82]} {Mouse: ENSMUSG00000024384, Iws1, IWS1, SUPT6 interacting protein, [RH, Score=278, Expect=5e-82]} {Dmel: FBgn0030738, CG9915, [RH, Score=226, Expect=1e-62]} {Celegans: WBGene00008729, F13B12.1, IWS1-like protein, [RH, Score=194, Expect=9e-54]} {Smed: dd_Smed_v6_995_0_1, dd_Smed_v6_995_0_1, [RH, Score=200, Expect=2e-56]} {RNA1509_17975} {RNA1310_3895.1} {RNA815_2445.1}
3. MligTC455_13735 77 1.59 Mlig455_001782

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_001782 {REF} {Length: 598} {NoTransDecoderORF}
4. MligTC455_21197 1137 23.69 Mlig455_040761, Mlig455_064595

Neo: -

Age: -

 MPP5 0.951 - - - 0.951 - -

Mlig455_040761 {REF} {Length: 6276} {Pfam: Guanylate kinase [PF00625.23, score=125.5]; Variant SH3 domain [PF07653.19, score=31.0]; PDZ domain [PF00595.26, score=27.1]; L27 domain [PF02828.18, score=23.9]; SH3 domain [PF00018.30, score=22.1]} {Human: ENSG00000072415, MPP5, membrane palmitoylated protein 5, [RH, Score=366, Expect=6e-115]} {Mouse: ENSMUSG00000021112, Mpp5, membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5), [RH, Score=363, Expect=9e-114]} {Dmel: FBgn0261873, sdt, stardust, [RH, Score=338, Expect=4e-98]} {Celegans: WBGene00006467, magu-2, MAGUK family, [RH, Score=280, Expect=7e-83]} {Smed: dd_Smed_v6_4689_0_1, dd_Smed_v6_4689_0_1, [RH, Score=317, Expect=1e-95]} {RNA1509_16859, RNA1509_18197} {RNA1310_2835, RNA1509_16859} {RNA1509_16859, RNA815_7940}

Mlig455_064595 {REF} {Length: 3602} {Pfam: Guanylate kinase [PF00625.23, score=125.5]; Variant SH3 domain [PF07653.19, score=31.0]; PDZ domain [PF00595.26, score=27.1]; L27 domain [PF02828.18, score=23.9]; SH3 domain [PF00018.30, score=22.1]} {Human: ENSG00000072415, MPP5, membrane palmitoylated protein 5, [RH, Score=366, Expect=6e-115]} {Mouse: ENSMUSG00000021112, Mpp5, membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5), [RH, Score=363, Expect=9e-114]} {Dmel: FBgn0261873, sdt, stardust, [RH, Score=338, Expect=4e-98]} {Celegans: WBGene00006467, magu-2, MAGUK family, [RH, Score=280, Expect=7e-83]} {Smed: dd_Smed_v6_4689_0_1, dd_Smed_v6_4689_0_1, [RH, Score=317, Expect=1e-95]} {RNA1509_18197} {RNA1310_2961.1} {RNA815_7940}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA