M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_17317

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17317 46 0.96 Mlig455_016653

Neo: -

Age: -

 NOXRED1 Mlig455_016653 {REF} {Length: 2429} {Pfam: NADP oxidoreductase coenzyme F420-dependent [PF03807.19, score=37.7]} {Human: ENSG00000165555, NOXRED1, NADP dependent oxidoreductase domain containing 1, [RH, Score=117, Expect=5e-29]} {Mouse: ENSMUSG00000072919, Noxred1, NADP+ dependent oxidoreductase domain containing 1, [Score=123, Expect=3e-30]} {Smed: dd_Smed_v6_14962_0_1, dd_Smed_v6_14962_0_1, [Score=119, Expect=4e-29]} {RNA1509_13348} {RNA1310_24844} {RNA815_21464}

Cumulative graph for MligTC455_17317

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.266 1.306 0.99972 1.00000
RegionR2 -3.317 1.306 0.99978 1.00000
RegionR3 -0.217 1.306 0.99986 1.00000
RegionR4 3.201 1.306 0.99984 1.00000
RegionR5 1.895 1.306 0.99990 1.00000
RegionR6 -0.739 1.306 0.99999 1.00000
RegionR7 -0.844 1.306 1.00000 1.00000
RegionR8 2.287 1.306 0.99993 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.449 1.306 0.99990 1.00000
RegenerationR2 4.396 1.306 0.00510 0.11203
RegenerationR3 1.829 1.306 0.05490 0.40280
RegenerationR4 2.025 1.306 0.04515 0.34268
RegenerationR5 1.681 1.306 0.08660 0.45356
RegenerationR6 3.09 1.306 0.05394 0.29105
RegenerationBL 1.06 1.306 0.32818 0.69457
RegenerationTP -1.811 1.306 0.99995 1.00000


Genes with expression patterns similar to MligTC455_17317

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17317 46 0.96 Mlig455_016653

Neo: -

Age: -

 NOXRED1 2 - - - 1.000 1.000 - Mlig455_016653 {REF} {Length: 2429} {Pfam: NADP oxidoreductase coenzyme F420-dependent [PF03807.19, score=37.7]} {Human: ENSG00000165555, NOXRED1, NADP dependent oxidoreductase domain containing 1, [RH, Score=117, Expect=5e-29]} {Mouse: ENSMUSG00000072919, Noxred1, NADP+ dependent oxidoreductase domain containing 1, [Score=123, Expect=3e-30]} {Smed: dd_Smed_v6_14962_0_1, dd_Smed_v6_14962_0_1, [Score=119, Expect=4e-29]} {RNA1509_13348} {RNA1310_24844} {RNA815_21464}
2. MligTC455_31187 157 3.27 Mlig455_003285, Mlig455_030234

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.829

 FAM57A 0.961 - - - - 0.961 -

Mlig455_003285 {REF} {Length: 5647} {TRANSSPLICED} {tRNA: Lys(TTT), score=88.9} {Pfam: TLC domain [PF03798.18, score=91.3]} {Human: ENSG00000167695, FAM57A, family with sequence similarity 57 member A, [Score=100, Expect=8e-25]} {Mouse: ENSMUSG00000069808, Fam57a, family with sequence similarity 57, member A, [Score=114, Expect=4e-30]} {RNA1509_29800} {RNA1310_23795.1} {RNA815_13618.1}

Mlig455_030234 {REF} {Length: 724} {NoTransDecoderORF} {RNA1509_32111} {RNA1310_40575} {RNA815_7836.1}
3. MligTC455_38708 306 6.36 Mlig455_040161

Neo: -

Age: Down-Up-Down

Region-enriched R2: 1.765/0.03108

 GCAT 0.96 - - - - 0.960 - Mlig455_040161 {REF} {Length: 2907} {TRANSSPLICED} {Pfam: Aminotransferase class I and II [PF00155.23, score=206.4]; Cys/Met metabolism PLP-dependent enzyme [PF01053.22, score=19.2]; Aminotransferase class-V [PF00266.21, score=18.2]} {Human: ENSG00000100116, GCAT, glycine C-acetyltransferase, [RH, Score=473, Expect=4e-166]} {Mouse: ENSMUSG00000006378, Gcat, glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase), [RH, Score=479, Expect=1e-168]} {Dmel: FBgn0036208, CG10361, [RH, Score=491, Expect=2e-173]} {Celegans: WBGene00012007, T25B9.1, [RH, Score=469, Expect=6e-165]} {Smed: dd_Smed_v6_2734_0_1, dd_Smed_v6_2734_0_1, [RH, Score=474, Expect=2e-166]} {RNA1509_20231, RNA1509_45760} {RNA1310_22904, RNA1509_20231, RNA1509_45760} {RNA1509_20231, RNA1509_45760, RNA815_10150}
4. MligTC455_39123 470 9.78 Mlig455_039300

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.404

 MAP3K19 0.96 - - - - 0.960 - Mlig455_039300 {REF} {Length: 5075} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=218.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=144.0]; Ankyrin repeats (many copies) [PF13637.8, score=53.7]; Ankyrin repeats (3 copies) [PF12796.9, score=50.0]; Ankyrin repeats (many copies) [PF13857.8, score=42.1]; Ankyrin repeat [PF00023.32, score=41.5]; Ankyrin repeat [PF13606.8, score=35.8]; Phosphotransferase enzyme family [PF01636.25, score=30.5]; Fungal protein kinase [PF17667.3, score=28.2]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=22.3]; ABC1 atypical kinase-like domain [PF03109.18, score=21.0]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [RH, Score=282, Expect=2e-77]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [RH, Score=291, Expect=2e-80]} {Dmel: FBgn0024329, Mekk1, [RH, Score=168, Expect=1e-41]} {Celegans: WBGene00016038, cst-2, Caenorhabditis STE20-like kinase, [Score=180, Expect=6e-49]} {Smed: dd_Smed_v6_10339_0_1, dd_Smed_v6_10339_0_1, [RH, Score=256, Expect=5e-71]} {RNA1509_8258} {RNA1310_1436.1} {RNA815_1740}
5. MligTC455_43840 32 0.67 Mlig455_027957

Neo: -

Age: -

 SYT9 0.96 - - - - 0.960 - Mlig455_027957 {REF} {Length: 2429} {Pfam: C2 domain [PF00168.32, score=117.2]} {Human: ENSG00000170743, SYT9, synaptotagmin 9, [Score=194, Expect=6e-56]} {Mouse: ENSMUSG00000062542, Syt9, synaptotagmin IX, [Score=193, Expect=1e-55]} {Dmel: FBgn0261090, Sytbeta, Synaptotagmin beta, [RH, Score=188, Expect=6e-53]} {Celegans: WBGene00004923, snt-3, SyNapTotagmin, [Score=152, Expect=1e-42]} {Smed: dd_Smed_v6_19328_0_1, dd_Smed_v6_19328_0_1, [RH, Score=164, Expect=2e-45]} {RNA1509_57021} {RNA1310_11363} {RNA815_14366}
6. MligTC455_26376 213 4.45 Mlig455_012618

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_012618 {REF} {Length: 3145} {TRANSSPLICED} {Smed: dd_Smed_v6_11504_0_1, dd_Smed_v6_11504_0_1, [Score=157, Expect=1e-41]} {RNA1509_15939} {RNA1310_5168} {RNA815_3126.1}
7. MligTC455_24798 538 11.2 Mlig455_023695

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_023695 {REF} {Length: 2299} {TRANSSPLICED} {RNA1509_21759, RNA1509_31618, RNA1509_36122, RNA1509_38225, RNA1509_56681} {RNA1310_32647, RNA1509_21759, RNA1509_31618, RNA1509_36122, RNA1509_38225, RNA1509_56681} {RNA1509_21759, RNA1509_31618, RNA1509_36122, RNA1509_38225, RNA1509_56681, RNA815_1138.1}
8. MligTC455_33432 59 1.23 Mlig455_047130, Mlig455_049075

Neo: -

Age: -

 0.955 - - - - 0.955 -

Mlig455_047130 {REF} {Length: 683} {Pfam: Protein of unknown function (FYDLN_acid) [PF09538.12, score=19.5]} {RNA1509_52826} {RNA1310_267.1} {RNA815_381.1}

Mlig455_049075 {REF} {Length: 2317} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=34.7]} {RNA1509_13203} {RNA1310_267.2} {RNA815_381.1}
9. MligTC455_31061 233 4.86 Mlig455_057963

Neo: -

Age: -

Region-enriched R4: 2.384/0.00974

 TONSL 0.954 - - - 0.954 - - Mlig455_057963 {REF} {Length: 5732} {Pfam: Leucine Rich repeat [PF13516.8, score=32.3]; Leucine Rich repeats (2 copies) [PF12799.9, score=24.7]} {Human: ENSG00000160949, TONSL, tonsoku like, DNA repair protein, [Score=53.9, Expect=1e-06]; ENSG00000285453, TONSL, tonsoku like, DNA repair protein, [Score=53.9, Expect=1e-06]} {RNA1509_54268} {RNA1310_1677.2} {RNA815_2688}
10. MligTC455_40991 373 7.77 Mlig455_012838

Neo: -

Age: Up-Down-Up

 RP1 0.953 - - - - 0.953 - Mlig455_012838 {REF} {Length: 9664} {TRANSSPLICED} {Pfam: PLAT/LH2 domain [PF01477.25, score=188.4]; Doublecortin [PF03607.19, score=102.1]} {Human: ENSG00000104237, RP1, RP1, axonemal microtubule associated, [Score=419, Expect=3e-120]} {Mouse: ENSMUSG00000025900, Rp1, retinitis pigmentosa 1 (human), [Score=414, Expect=7e-119]} {Dmel: FBgn0261387, CG17528, [Score=68.9, Expect=6e-11]} {Celegans: WBGene00006993, zyg-8, Serine/threonine-protein kinase zyg-8, [Score=75.1, Expect=5e-13]} {Smed: dd_Smed_v6_10315_0_2, dd_Smed_v6_10315_0_2, [Score=480, Expect=2e-142]} {RNA1509_42150} {RNA1310_1407} {RNA815_6255}
11. MligTC455_49646 739 15.39 Mlig455_067640

Neo: -

Age: -

 MEF2D 0.951 - - - - 0.951 - Mlig455_067640 {REF} {Length: 5061} {TRANSSPLICED} {Pfam: SRF-type transcription factor (DNA-binding and dimerisation domain) [PF00319.20, score=87.0]} {Human: ENSG00000116604, MEF2D, myocyte enhancer factor 2D, [Score=171, Expect=2e-50]; ENSG00000213999, MEF2B, myocyte enhancer factor 2B, [Score=170, Expect=3e-51]; ENSG00000064489, BORCS8-MEF2B, BORCS8-MEF2B readthrough, [Score=170, Expect=3e-51]; ENSG00000068305, MEF2A, myocyte enhancer factor 2A, [Score=167, Expect=3e-49]; ENSG00000081189, MEF2C, myocyte enhancer factor 2C, [Score=166, Expect=1e-52]} {Mouse: ENSMUSG00000001419, Mef2d, myocyte enhancer factor 2D, [Score=171, Expect=1e-50]; ENSMUSG00000030557, Mef2a, myocyte enhancer factor 2A, [Score=167, Expect=2e-49]; ENSMUSG00000005583, Mef2c, myocyte enhancer factor 2C, [Score=166, Expect=4e-53]} {Dmel: FBgn0011656, Mef2, Myocyte enhancer factor 2, [Score=162, Expect=3e-47]} {Celegans: WBGene00003182, mef-2, Related to vertebrate MEF2 transcription factor, [Score=174, Expect=2e-53]} {Smed: dd_Smed_v6_6889_0_1, dd_Smed_v6_6889_0_1, [Score=152, Expect=4e-44]} {RNA1509_58067, RNA1509_8265} {RNA1310_21974.1, RNA1509_58067, RNA1509_8265} {RNA1509_58067, RNA1509_8265, RNA815_4359.2}
12. MligTC455_09427 51 1.05 Mlig455_024323

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_024323 {REF} {Length: 1791} {RNA1509_52019} {RNA1310_40479} {RNA815_16926}
13. MligTC455_23587 421 8.78 Mlig455_007553

Neo: -

Age: Down-Up-Down

 CNBD1 0.95 - - - - 0.950 - Mlig455_007553 {REF} {Length: 1538} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=32.7]} {Human: ENSG00000176571, CNBD1, cyclic nucleotide binding domain containing 1, [RH, Score=117, Expect=6e-30]} {Smed: dd_Smed_v6_14225_0_1, dd_Smed_v6_14225_0_1, [RH, Score=216, Expect=2e-64]} {RNA1509_35878} {RNA1310_17903} {RNA815_7217}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA