TomoSeq data search

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Results for MligTC455_17594

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_17594	51	1.06	Mlig455_056437	Neo: - Age: -	RBMS2	Mlig455_056437 {REF} {Length: 6239} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=36.1]; Tetratricopeptide repeat [PF13432.8, score=22.2]; Tetratricopeptide repeat [PF00515.30, score=21.2]; Tetratricopeptide repeat [PF07719.19, score=20.8]; Tetratricopeptide repeat [PF13181.8, score=19.0]} {Human: ENSG00000076067, RBMS2, RNA binding motif single stranded interacting protein 2, [Score=71.2, Expect=3e-12]; ENSG00000153250, RBMS1, RNA binding motif single stranded interacting protein 1, [Score=69.7, Expect=1e-11]; ENSG00000144642, RBMS3, RNA binding motif single stranded interacting protein 3, [Score=69.3, Expect=2e-11]} {Mouse: ENSMUSG00000040043, Rbms2, RNA binding motif, single stranded interacting protein 2, [Score=71.2, Expect=2e-12]; ENSMUSG00000026970, Rbms1, RNA binding motif, single stranded interacting protein 1, [Score=69.3, Expect=9e-12]; ENSMUSG00000039607, Rbms3, RNA binding motif, single stranded interacting protein, [Score=68.9, Expect=1e-11]} {Dmel: FBgn0052423, shep, alan shepard, [Score=67.0, Expect=6e-11]} {Smed: dd_Smed_v6_3832_0_1, dd_Smed_v6_3832_0_1, [Score=65.5, Expect=5e-11]} {RNA1509_20722} {RNA1310_1786, RNA1509_20722} {RNA1509_20722, RNA815_1098}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_17594

1.06

Mlig455_056437

Neo: -

Age: -

RBMS2

Mlig455_056437 {REF} {Length: 6239} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=36.1]; Tetratricopeptide repeat [PF13432.8, score=22.2]; Tetratricopeptide repeat [PF00515.30, score=21.2]; Tetratricopeptide repeat [PF07719.19, score=20.8]; Tetratricopeptide repeat [PF13181.8, score=19.0]} {Human: ENSG00000076067, RBMS2, RNA binding motif single stranded interacting protein 2, [Score=71.2, Expect=3e-12]; ENSG00000153250, RBMS1, RNA binding motif single stranded interacting protein 1, [Score=69.7, Expect=1e-11]; ENSG00000144642, RBMS3, RNA binding motif single stranded interacting protein 3, [Score=69.3, Expect=2e-11]} {Mouse: ENSMUSG00000040043, Rbms2, RNA binding motif, single stranded interacting protein 2, [Score=71.2, Expect=2e-12]; ENSMUSG00000026970, Rbms1, RNA binding motif, single stranded interacting protein 1, [Score=69.3, Expect=9e-12]; ENSMUSG00000039607, Rbms3, RNA binding motif, single stranded interacting protein, [Score=68.9, Expect=1e-11]} {Dmel: FBgn0052423, shep, alan shepard, [Score=67.0, Expect=6e-11]} {Smed: dd_Smed_v6_3832_0_1, dd_Smed_v6_3832_0_1, [Score=65.5, Expect=5e-11]} {RNA1509_20722} {RNA1310_1786, RNA1509_20722} {RNA1509_20722, RNA815_1098}

Cumulative graph for MligTC455_17594

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.512	1.371	0.96181	1.00000
RegionR2	2.165	1.371	0.16110	0.50214
RegionR3	-0.361	1.371	0.92085	1.00000
RegionR4	-0.078	1.371	0.82373	1.00000
RegionR5	-3.004	1.371	0.99975	1.00000
RegionR6	0.371	1.371	0.68226	1.00000
RegionR7	3.486	1.371	0.01957	0.25887
RegionR8	-2.068	1.371	0.58988	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-2.456	1.371	0.76196	1.00000
RegenerationR2	-0.33	1.371	0.72901	0.96545
RegenerationR3	1.19	1.371	0.36905	0.78341
RegenerationR4	-0.319	1.371	0.75015	0.97007
RegenerationR5	2.116	1.371	0.11014	0.50184
RegenerationR6	0.418	1.371	0.78367	0.96926
RegenerationBL	0.039	1.371	0.81893	1.00000
RegenerationTP	-0.062	1.371	0.81413	1.00000

Genes with expression patterns similar to MligTC455_17594

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_17594	51	1.06	Mlig455_056437	Neo: - Age: -	RBMS2	4	1.000	1.000	-	-	1.000	1.000	Mlig455_056437 {REF} {Length: 6239} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=36.1]; Tetratricopeptide repeat [PF13432.8, score=22.2]; Tetratricopeptide repeat [PF00515.30, score=21.2]; Tetratricopeptide repeat [PF07719.19, score=20.8]; Tetratricopeptide repeat [PF13181.8, score=19.0]} {Human: ENSG00000076067, RBMS2, RNA binding motif single stranded interacting protein 2, [Score=71.2, Expect=3e-12]; ENSG00000153250, RBMS1, RNA binding motif single stranded interacting protein 1, [Score=69.7, Expect=1e-11]; ENSG00000144642, RBMS3, RNA binding motif single stranded interacting protein 3, [Score=69.3, Expect=2e-11]} {Mouse: ENSMUSG00000040043, Rbms2, RNA binding motif, single stranded interacting protein 2, [Score=71.2, Expect=2e-12]; ENSMUSG00000026970, Rbms1, RNA binding motif, single stranded interacting protein 1, [Score=69.3, Expect=9e-12]; ENSMUSG00000039607, Rbms3, RNA binding motif, single stranded interacting protein, [Score=68.9, Expect=1e-11]} {Dmel: FBgn0052423, shep, alan shepard, [Score=67.0, Expect=6e-11]} {Smed: dd_Smed_v6_3832_0_1, dd_Smed_v6_3832_0_1, [Score=65.5, Expect=5e-11]} {RNA1509_20722} {RNA1310_1786, RNA1509_20722} {RNA1509_20722, RNA815_1098}
2.	MligTC455_43786	401	8.35	Mlig455_054385	Neo: - Age: -	CCDC60	0.972	-	-	-	-	-	0.972	Mlig455_054385 {REF} {Length: 3003} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4698) [PF15769.7, score=170.6]} {Human: ENSG00000183273, CCDC60, coiled-coil domain containing 60, [Score=62.8, Expect=2e-09]} {Mouse: ENSMUSG00000043913, Ccdc60, coiled-coil domain containing 60, [Score=62.4, Expect=1e-09]} {Smed: dd_Smed_v6_14286_0_1, dd_Smed_v6_14286_0_1, [Score=115, Expect=1e-26]} {RNA1509_58886} {RNA1310_1558.2} {RNA815_11153}
3.	MligTC455_15906	143	2.98	Mlig455_023489	Neo: - Age: -	BTAF1	0.97	-	-	-	-	0.970	-	Mlig455_023489 {REF} {Length: 6298} {Pfam: SNF2-related domain [PF00176.25, score=208.1]; Domain of unknown function (DUF3535) [PF12054.10, score=151.5]; Helicase conserved C-terminal domain [PF00271.33, score=63.1]; HEAT repeat [PF02985.24, score=31.0]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=21.6]} {Human: ENSG00000095564, BTAF1, B-TFIID TATA-box binding protein associated factor 1, [RH, Score=1006, Expect=0.0]} {Mouse: ENSMUSG00000040565, Btaf1, B-TFIID TATA-box binding protein associated factor 1, [RH, Score=1013, Expect=0.0]} {Dmel: FBgn0022787, Hel89B, Helicase 89B, [RH, Score=665, Expect=0.0]} {Celegans: WBGene00000274, btf-1, BTAF (TBP-associated factor) homolog, [RH, Score=421, Expect=3e-121]} {Smed: dd_Smed_v6_3088_0_1, dd_Smed_v6_3088_0_1, [RH, Score=776, Expect=0.0]} {RNA1509_18482} {RNA1310_2212} {RNA815_6609}
4.	MligTC455_11958	26	0.54	Mlig455_035540	Neo: - Age: -		0.958	0.958	-	-	-	-	-	Mlig455_035540 {REF} {Length: 976} {RNA1509_48973} {RNA1310_39954.1} {RNA815_19596}
5.	MligTC455_44095	28	0.58	Mlig455_018923	Neo: - Age: - Region-enriched R4: 5.240/0.00596	PCDH17	0.957	-	0.957	-	-	-	-	Mlig455_018923 {REF} {Length: 4598} {Pfam: Cadherin domain [PF00028.19, score=236.4]; Cadherin-like [PF16184.7, score=27.2]; Cadherin-like [PF08266.14, score=26.5]} {Human: ENSG00000118946, PCDH17, protocadherin 17, [RH, Score=260, Expect=1e-70]} {Mouse: ENSMUSG00000051323, Pcdh19, protocadherin 19, [RH, Score=263, Expect=6e-72]; ENSMUSG00000035566, Pcdh17, protocadherin 17, [RH, Score=261, Expect=6e-71]; ENSMUSG00000045689, Pcdhb4, protocadherin beta 4, [RH, Score=259, Expect=2e-72]} {Dmel: FBgn0024836, stan, starry night, [Score=216, Expect=4e-56]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=176, Expect=4e-44]} {Smed: dd_Smed_v6_21489_0_1, dd_Smed_v6_21489_0_1, [Score=278, Expect=3e-78]} {RNA1509_38737} {RNA1310_26793} {RNA815_64569}
6.	MligTC455_44096	32	0.67	Mlig455_018761, Mlig455_018927	Neo: - Age: - Region-enriched R4: 5.939/0.00142		0.957	-	0.957	-	-	-	-	Mlig455_018761 {REF} {Length: 1605} {RNA1509_36146} {RNA1310_50474} {RNA815_9284} Mlig455_018927 {REF} {Length: 238} {NoTransDecoderORF}