TomoSeq data search

Data search

Results for MligTC455_17605

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_17605

498

10.38

Mlig455_059803

Neo: -

Age: -

ARHGAP26

Mlig455_059803 {REF} {Length: 2891} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=118.6]; BAR domain of APPL family [PF16746.7, score=50.6]; PH domain [PF00169.31, score=30.7]; Variant SH3 domain [PF14604.8, score=20.1]} {Human: ENSG00000145819, ARHGAP26, Rho GTPase activating protein 26, [RH, Score=164, Expect=3e-42]} {Mouse: ENSMUSG00000036452, Arhgap26, Rho GTPase activating protein 26, [RH, Score=152, Expect=5e-38]} {Dmel: FBgn0030685, Graf, GTPase regulator associated with FAK, [RH, Score=127, Expect=7e-30]} {Celegans: WBGene00020209, T04C9.1, [Score=141, Expect=9e-35]} {Smed: dd_Smed_v6_10070_0_1, dd_Smed_v6_10070_0_1, [RH, Score=146, Expect=1e-36]} {RNA1509_22282, RNA1509_27411, RNA1509_44509} {RNA1310_6186.1, RNA1509_22282, RNA1509_27411, RNA1509_44509} {RNA1509_22282, RNA1509_27411, RNA1509_44509, RNA815_10613}

Cumulative graph for MligTC455_17605

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.309	3.761	0.84457	1.00000
RegionR2	-0.155	3.761	0.77736	1.00000
RegionR3	0.296	3.761	0.49750	0.99361
RegionR4	0.894	3.761	0.08469	0.27528
RegionR5	-0.298	3.761	0.52460	0.88721
RegionR6	0.448	3.761	0.31155	0.90125
RegionR7	0.393	3.761	0.52128	1.00000
RegionR8	-1.887	3.761	0.10805	0.61211

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.744	3.761	0.72225	1.00000
RegenerationR2	0.646	3.761	0.07042	0.43086
RegenerationR3	0.263	3.761	0.52636	0.86995
RegenerationR4	0.274	3.761	0.52110	0.87961
RegenerationR5	0.835	3.761	0.03838	0.32356
RegenerationR6	-0.465	3.761	0.28737	0.63748
RegenerationBL	0.898	3.761	0.14790	0.45941
RegenerationTP	0.927	3.761	0.24444	0.69061

Genes with expression patterns similar to MligTC455_17605

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_17605	498	10.38	Mlig455_059803	Neo: - Age: -	ARHGAP26	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_059803 {REF} {Length: 2891} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=118.6]; BAR domain of APPL family [PF16746.7, score=50.6]; PH domain [PF00169.31, score=30.7]; Variant SH3 domain [PF14604.8, score=20.1]} {Human: ENSG00000145819, ARHGAP26, Rho GTPase activating protein 26, [RH, Score=164, Expect=3e-42]} {Mouse: ENSMUSG00000036452, Arhgap26, Rho GTPase activating protein 26, [RH, Score=152, Expect=5e-38]} {Dmel: FBgn0030685, Graf, GTPase regulator associated with FAK, [RH, Score=127, Expect=7e-30]} {Celegans: WBGene00020209, T04C9.1, [Score=141, Expect=9e-35]} {Smed: dd_Smed_v6_10070_0_1, dd_Smed_v6_10070_0_1, [RH, Score=146, Expect=1e-36]} {RNA1509_22282, RNA1509_27411, RNA1509_44509} {RNA1310_6186.1, RNA1509_22282, RNA1509_27411, RNA1509_44509} {RNA1509_22282, RNA1509_27411, RNA1509_44509, RNA815_10613}
2.	MligTC455_49627	453	9.43	Mlig455_020485	Neo: - Age: -		1.71	-	-	-	0.959	-	0.751	Mlig455_020485 {REF} {Length: 1358} {TRANSSPLICED} {RNA1310_29356.1} {RNA815_39483}
3.	MligTC455_54076	715	14.9	Mlig455_015419	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.789	CUBN	1.7	-	-	-	0.718	0.982	-	Mlig455_015419 {REF} {Length: 1794} {Pfam: CUB domain [PF00431.22, score=65.2]} {Human: ENSG00000107611, CUBN, cubilin, [Score=63.2, Expect=4e-10]; ENSG00000095587, TLL2, tolloid like 2, [Score=61.6, Expect=1e-09]; ENSG00000187908, DMBT1, deleted in malignant brain tumors 1, [Score=60.8, Expect=2e-09]; ENSG00000038295, TLL1, tolloid like 1, [Score=60.1, Expect=4e-09]} {Mouse: ENSMUSG00000026726, Cubn, cubilin (intrinsic factor-cobalamin receptor), [Score=72.0, Expect=4e-13]} {Dmel: FBgn0004885, tok, tolkin, [Score=58.9, Expect=4e-09]} {Smed: dd_Smed_v6_5652_0_1, dd_Smed_v6_5652_0_1, [Score=64.7, Expect=4e-11]} {RNA1509_9300} {RNA1310_18452, RNA1509_9300} {RNA1509_9300, RNA815_8451}
4.	MligTC455_51394	154	3.21	Mlig455_016630	Neo: - Age: Down-Up-Down	POFUT2	0.968	-	-	-	-	0.968	-	Mlig455_016630 {REF} {Length: 4830} {Pfam: GDP-fucose protein O-fucosyltransferase [PF10250.11, score=177.7]} {Human: ENSG00000186866, POFUT2, protein O-fucosyltransferase 2, [RH, Score=305, Expect=2e-99]} {Mouse: ENSMUSG00000020260, Pofut2, protein O-fucosyltransferase 2, [RH, Score=308, Expect=7e-101]} {Dmel: FBgn0027791, O-fut2, O-fucosyltransferase 2, [RH, Score=241, Expect=2e-74]} {Celegans: WBGene00010757, pad-2, GDP-fucose protein O-fucosyltransferase 2, [RH, Score=279, Expect=8e-90]} {Smed: dd_Smed_v6_9239_0_1, dd_Smed_v6_9239_0_1, [RH, Score=257, Expect=2e-81]} {RNA1509_19497, RNA1509_27235} {RNA1310_18628.1, RNA1509_19497, RNA1509_27235} {RNA1509_19497, RNA1509_27235, RNA815_10021}
5.	MligTC455_51005	1807	37.66	Mlig455_066127	Neo: - Age: Down-Up-Down Region-enriched R4: 1.118/0.03208		0.967	-	-	0.967	-	-	-	Mlig455_066127 {REF} {Length: 1581} {RNA1509_9951} {RNA1310_20859} {RNA815_18950.1}
6.	MligTC455_46521	1421	29.61	Mlig455_062322, Mlig455_062331	Neo: - Age: -		0.966	-	-	-	0.966	-	-	Mlig455_062322 {REF} {Length: 2064} {Pfam: Domain of unknown function (DUF4587) [PF15248.8, score=19.4]} {Smed: dd_Smed_v6_11697_0_1, dd_Smed_v6_11697_0_1, [RH, Score=198, Expect=2e-57]} {RNA1509_58466, RNA1509_6983} {RNA1310_8862, RNA1509_58466, RNA1509_6983} {RNA1509_58466, RNA1509_6983, RNA815_6527} Mlig455_062331 {REF} {Length: 1974} {Smed: dd_Smed_v6_11697_0_1, dd_Smed_v6_11697_0_1, [RH, Score=198, Expect=3e-57]} {RNA1509_6983} {RNA1310_8862} {RNA815_6527}
7.	MligTC455_07972	548	11.41	Mlig455_059614	Neo: - Age: -	BRCC3	0.962	-	-	0.962	-	-	-	Mlig455_059614 {REF} {Length: 1474} {TRANSSPLICED} {Pfam: JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=73.8]; Prokaryotic homologs of the JAB domain [PF14464.8, score=29.4]; BRCC36 C-terminal helical domain [PF18110.3, score=26.6]} {Human: ENSG00000185515, BRCC3, BRCA1/BRCA2-containing complex subunit 3, [RH, Score=133, Expect=3e-37]} {Mouse: ENSMUSG00000031201, Brcc3, BRCA1/BRCA2-containing complex, subunit 3, [RH, Score=133, Expect=3e-37]; ENSMUSG00000112039, Gm5136, predicted gene 5136, [RH, Score=127, Expect=3e-35]} {Dmel: FBgn0028694, Rpn11, Regulatory particle non-ATPase 11, [Score=45.8, Expect=1e-05]} {Celegans: WBGene00000817, csn-5, COP9 signalosome complex subunit 5, [Score=47.4, Expect=4e-06]} {Smed: dd_Smed_v6_2781_0_1, dd_Smed_v6_2781_0_1, [Score=48.9, Expect=8e-07]} {RNA1509_11427, RNA1509_35550, RNA1509_51888} {RNA1310_16472.1, RNA1509_35550, RNA1509_51888} {RNA1509_35550, RNA1509_51888, RNA815_8722}
8.	MligTC455_26181	913	19.02	Mlig455_022640	Neo: - Age: -	TM9SF2	0.96	-	-	-	0.960	-	-	Mlig455_022640 {REF} {Length: 1896} {Pfam: Endomembrane protein 70 [PF02990.18, score=78.6]} {Human: ENSG00000125304, TM9SF2, transmembrane 9 superfamily member 2, [Score=162, Expect=1e-47]} {Mouse: ENSMUSG00000025544, Tm9sf2, transmembrane 9 superfamily member 2, [Score=162, Expect=2e-48]} {Dmel: FBgn0032880, TM9SF2, Transmembrane 9 superfamily protein member 2, [Score=159, Expect=1e-46]} {Celegans: WBGene00006472, tag-123, Transmembrane 9 superfamily member, [Score=141, Expect=3e-40]} {Smed: dd_Smed_v6_2806_0_1, dd_Smed_v6_2806_0_1, [Score=119, Expect=2e-32]} {RNA1509_25453} {RNA1310_6047.1} {RNA815_1817}
9.	MligTC455_37310	188	3.92	Mlig455_043635	Neo: - Age: Down-Down-Up, logFC(26M/2M)=3.872	ARRDC4	0.96	-	-	-	-	0.960	-	Mlig455_043635 {REF} {Length: 2231} {Pfam: Arrestin (or S-antigen), N-terminal domain [PF00339.31, score=81.3]; Arrestin (or S-antigen), C-terminal domain [PF02752.24, score=44.1]} {Human: ENSG00000140450, ARRDC4, arrestin domain containing 4, [Score=70.1, Expect=3e-12]; ENSG00000197070, ARRDC1, arrestin domain containing 1, [Score=67.8, Expect=2e-11]} {Mouse: ENSMUSG00000026972, Arrdc1, arrestin domain containing 1, [Score=63.5, Expect=3e-10]} {Dmel: FBgn0035103, Vdup1, Vitamin D[[3]] up-regulated protein 1, [Score=78.2, Expect=2e-15]} {Celegans: WBGene00018060, arrd-18, ARRestin Domain protein, [Score=65.5, Expect=4e-11]} {RNA1509_13418} {RNA1310_36821} {RNA815_11006.1}

Berezikov Lab - 2020-2021 © ERIBA