Data search
Results for MligTC455_17661
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_17661 | 222 | 4.62 | Mlig455_061687, Mlig455_063123 | Neo: - Age: Down-Up-Up |
CGRRF1 | Mlig455_061687 {REF} {Length: 1628} {TRANSSPLICED} {tRNA: Val(CAC),pseudo, score=28.9} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=45.9]; Prokaryotic RING finger family 4 [PF14447.8, score=23.9]} {Human: ENSG00000100532, CGRRF1, cell growth regulator with ring finger domain 1, [RH, Score=50.8, Expect=1e-06]} {Mouse: ENSMUSG00000055128, Cgrrf1, cell growth regulator with ring finger domain 1, [RH, Score=50.4, Expect=1e-06]; ENSMUSG00000053128, Rnf26, ring finger protein 26, [RH, Score=48.1, Expect=3e-07]} {Dmel: FBgn0035483, Mul1, Mitochondrial E3 ubiquitin protein ligase 1, [Score=55.8, Expect=2e-08]} {Celegans: WBGene00007529, C11H1.3, [Score=51.2, Expect=6e-07]} {Smed: dd_Smed_v6_1803_0_2, dd_Smed_v6_1803_0_2, [Score=51.6, Expect=3e-07]} {RNA1509_21490} {RNA1310_25516} {RNA815_19702} Mlig455_063123 {REF} {Length: 2071} {TRANSSPLICED} {tRNA: Val(CAC),pseudo, score=29.6} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=45.9]; Prokaryotic RING finger family 4 [PF14447.8, score=23.9]} {Human: ENSG00000100532, CGRRF1, cell growth regulator with ring finger domain 1, [RH, Score=50.4, Expect=2e-06]} {Mouse: ENSMUSG00000055128, Cgrrf1, cell growth regulator with ring finger domain 1, [RH, Score=50.8, Expect=9e-07]} {Dmel: FBgn0035483, Mul1, Mitochondrial E3 ubiquitin protein ligase 1, [Score=55.8, Expect=2e-08]} {Celegans: WBGene00007529, C11H1.3, [Score=51.2, Expect=5e-07]} {Smed: dd_Smed_v6_1803_0_1, dd_Smed_v6_1803_0_1, [Score=51.6, Expect=3e-07]} {RNA1509_21490} {RNA1310_25516} {RNA815_33555} |
Cumulative graph for MligTC455_17661
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -6.48 | 2.932 | 0.11708 | 0.70519 | |
| RegionR2 | 1.484 | 2.932 | 0.18387 | 0.53576 | |
| RegionR3 | 1.04 | 2.932 | 0.27072 | 0.81519 | |
| RegionR4 | -0.121 | 2.932 | 0.88913 | 1.00000 | |
| RegionR5 | 0.946 | 2.932 | 0.29040 | 0.62183 | |
| RegionR6 | 0.814 | 2.932 | 0.39896 | 0.97102 | |
| RegionR7 | 0.506 | 2.932 | 0.64684 | 1.00000 | |
| RegionR8 | 1.811 | 2.932 | 0.14179 | 0.68711 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 1.174 | 2.932 | 0.99981 | 1.00000 | |
| RegenerationR2 | -0.798 | 2.932 | 0.26828 | 0.71408 | |
| RegenerationR3 | -0.742 | 2.932 | 0.35619 | 0.77380 | |
| RegenerationR4 | 0.085 | 2.932 | 0.92374 | 1.00000 | |
| RegenerationR5 | -0.64 | 2.932 | 0.37706 | 0.78518 | |
| RegenerationR6 | -0.166 | 2.932 | 0.85118 | 1.00000 | |
| RegenerationBL | 0.307 | 2.932 | 0.74906 | 1.00000 | |
| RegenerationTP | -0.04 | 2.932 | 0.96239 | 1.00000 |
Genes with expression patterns similar to MligTC455_17661
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_17661 | 222 | 4.62 | Mlig455_061687, Mlig455_063123 | Neo: - Age: Down-Up-Up |
CGRRF1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_061687 {REF} {Length: 1628} {TRANSSPLICED} {tRNA: Val(CAC),pseudo, score=28.9} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=45.9]; Prokaryotic RING finger family 4 [PF14447.8, score=23.9]} {Human: ENSG00000100532, CGRRF1, cell growth regulator with ring finger domain 1, [RH, Score=50.8, Expect=1e-06]} {Mouse: ENSMUSG00000055128, Cgrrf1, cell growth regulator with ring finger domain 1, [RH, Score=50.4, Expect=1e-06]; ENSMUSG00000053128, Rnf26, ring finger protein 26, [RH, Score=48.1, Expect=3e-07]} {Dmel: FBgn0035483, Mul1, Mitochondrial E3 ubiquitin protein ligase 1, [Score=55.8, Expect=2e-08]} {Celegans: WBGene00007529, C11H1.3, [Score=51.2, Expect=6e-07]} {Smed: dd_Smed_v6_1803_0_2, dd_Smed_v6_1803_0_2, [Score=51.6, Expect=3e-07]} {RNA1509_21490} {RNA1310_25516} {RNA815_19702} Mlig455_063123 {REF} {Length: 2071} {TRANSSPLICED} {tRNA: Val(CAC),pseudo, score=29.6} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=45.9]; Prokaryotic RING finger family 4 [PF14447.8, score=23.9]} {Human: ENSG00000100532, CGRRF1, cell growth regulator with ring finger domain 1, [RH, Score=50.4, Expect=2e-06]} {Mouse: ENSMUSG00000055128, Cgrrf1, cell growth regulator with ring finger domain 1, [RH, Score=50.8, Expect=9e-07]} {Dmel: FBgn0035483, Mul1, Mitochondrial E3 ubiquitin protein ligase 1, [Score=55.8, Expect=2e-08]} {Celegans: WBGene00007529, C11H1.3, [Score=51.2, Expect=5e-07]} {Smed: dd_Smed_v6_1803_0_1, dd_Smed_v6_1803_0_1, [Score=51.6, Expect=3e-07]} {RNA1509_21490} {RNA1310_25516} {RNA815_33555} |
| 2. | MligTC455_53212 | 366 | 7.63 | Mlig455_011462, Mlig455_011547 | Neo: Irradiation Age: Up-Down-Down, logFC(26M/2M)=-0.277 Region-specific R4: 3.123 Region-enriched R4: 2.392/0.00134 Regeneration-upregulated R6: 2.996 Regeneration-enriched R6: 2.996 |
USP8 | 1.741 | - | - | - | 0.956 | - | 0.785 | Mlig455_011462 {REF} {Length: 4001} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=230.0]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=50.2]; USP8 dimerisation domain [PF08969.13, score=36.7]} {Human: ENSG00000138592, USP8, ubiquitin specific peptidase 8, [Score=284, Expect=9e-82]} {Mouse: ENSMUSG00000027363, Usp8, ubiquitin specific peptidase 8, [Score=282, Expect=7e-81]} {Dmel: FBgn0038862, Usp8, Ubiquitin specific protease 8, [Score=215, Expect=2e-62]} {Celegans: WBGene00008441, usp-50, Ubiquitin Specific Protease, [Score=177, Expect=7e-46]} {Smed: dd_Smed_v6_6489_0_1, dd_Smed_v6_6489_0_1, [Score=311, Expect=2e-92]} {RNA1509_23876, RNA1509_57579} {RNA1310_7359, RNA1509_57579} {RNA1509_57579, RNA815_7370.1} Mlig455_011547 {REF} {Length: 3648} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=230.6]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=50.7]; USP8 dimerisation domain [PF08969.13, score=36.1]} {Human: ENSG00000138592, USP8, ubiquitin specific peptidase 8, [Score=282, Expect=5e-81]} {Mouse: ENSMUSG00000027363, Usp8, ubiquitin specific peptidase 8, [Score=280, Expect=4e-80]} {Dmel: FBgn0038862, Usp8, Ubiquitin specific protease 8, [Score=217, Expect=2e-63]} {Celegans: WBGene00008441, usp-50, Ubiquitin Specific Protease, [Score=176, Expect=1e-45]} {Smed: dd_Smed_v6_6489_0_1, dd_Smed_v6_6489_0_1, [Score=308, Expect=3e-91]} {RNA1509_23876} {RNA1310_7359, RNA1509_23876} {RNA1509_23876, RNA815_7370.1} |
| 3. | MligTC455_28865 | 175 | 3.64 | Mlig455_011624 | Neo: - Age: Down-Up-Down |
EHMT1 | 1.706 | - | - | 0.739 | 0.967 | - | - | Mlig455_011624 {REF} {Length: 4018} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=95.5]; Ankyrin repeats (many copies) [PF13637.8, score=86.5]; Ankyrin repeats (many copies) [PF13857.8, score=66.4]; Ankyrin repeat [PF00023.32, score=56.5]; Ankyrin repeat [PF13606.8, score=47.6]} {Human: ENSG00000181090, EHMT1, euchromatic histone lysine methyltransferase 1, [Score=81.3, Expect=5e-16]; ENSG00000134313, KIDINS220, kinase D interacting substrate 220, [Score=78.6, Expect=1e-14]} {Mouse: ENSMUSG00000036893, Ehmt1, euchromatic histone methyltransferase 1, [Score=81.6, Expect=1e-15]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=68.2, Expect=1e-11]} {Celegans: WBGene00001411, fem-1, Sex-determining protein fem-1, [Score=67.4, Expect=1e-11]} {Smed: dd_Smed_v6_10835_0_1, dd_Smed_v6_10835_0_1, [Score=70.1, Expect=2e-12]} {RNA1509_28052} {RNA1310_14237} {RNA815_22032} |
| 4. | MligTC455_32357 | 197 | 4.11 | Mlig455_042248 | Neo: - Age: Up-Down-Down |
SEMA4D | 0.976 | - | - | - | - | - | 0.976 | Mlig455_042248 {REF} {Length: 3111} {TRANSSPLICED} {Pfam: Sema domain [PF01403.21, score=92.7]} {Human: ENSG00000187764, SEMA4D, semaphorin 4D, [RH, Score=87.4, Expect=4e-17]} {Mouse: ENSMUSG00000021451, Sema4d, sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D, [Score=89.4, Expect=9e-18]} {RNA1509_27613} {RNA1310_4753.1} {RNA815_4966.1} |
| 5. | MligTC455_49661 | 84 | 1.74 | Mlig455_019021 | Neo: - |
DUSP6 | 0.958 | - | - | - | - | - | 0.958 | Mlig455_019021 {REF} {Length: 1794} {TRANSSPLICED} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=79.8]} {Human: ENSG00000139318, DUSP6, dual specificity phosphatase 6, [Score=81.6, Expect=2e-18]; ENSG00000164086, DUSP7, dual specificity phosphatase 7, [Score=80.1, Expect=3e-17]} {Mouse: ENSMUSG00000019960, Dusp6, dual specificity phosphatase 6, [Score=81.3, Expect=7e-18]; ENSMUSG00000053716, Dusp7, dual specificity phosphatase 7, [Score=80.1, Expect=2e-17]} {Dmel: FBgn0243512, puc, puckered, [Score=65.5, Expect=2e-12]} {Celegans: WBGene00021867, Y54F10BM.13, [Score=86.3, Expect=1e-20]} {Smed: dd_Smed_v6_8066_0_1, dd_Smed_v6_8066_0_1, [Score=64.7, Expect=2e-12]} {RNA1509_11978} {RNA1310_30749} {RNA815_30756} |
| 6. | MligTC455_34349 | 194 | 4.05 | Mlig455_020344 | Neo: - Age: Up-Up-Down |
SLC38A7 | 0.957 | - | - | - | - | - | 0.957 | Mlig455_020344 {REF} {Length: 1192} {Pfam: Transmembrane amino acid transporter protein [PF01490.20, score=34.4]} {Human: ENSG00000103042, SLC38A7, solute carrier family 38 member 7, [Score=75.9, Expect=8e-17]} {Mouse: ENSMUSG00000036534, Slc38a7, solute carrier family 38, member 7, [Score=77.4, Expect=2e-17]} {Smed: dd_Smed_v6_9762_0_1, dd_Smed_v6_9762_0_1, [Score=66.2, Expect=5e-14]} {RNA1509_31669} {RNA1310_11380} {RNA815_28572.1} |
| 7. | MligTC455_32869 | 551 | 11.49 | Mlig455_028343, Mlig455_066172 | Neo: - Age: Down-Up-Up |
0.953 | - | - | - | - | - | 0.953 | Mlig455_028343 {REF} {Length: 1388} {TRANSSPLICED} {Mouse: ENSMUSG00000026466, Tor1aip1, torsin A interacting protein 1, [Score=55.5, Expect=4e-08]} {RNA1509_35885} {RNA1310_16387.1} {RNA815_8873} Mlig455_066172 {REF} {Length: 2154} {TRANSSPLICED} {RNA1509_23176} {RNA1310_12450} {RNA815_4381} |
|
| 8. | MligTC455_44427 | 1697 | 35.35 | Mlig455_017555, Mlig455_026850, Mlig455_030844 | Neo: - Age: - |
STX6 | 0.952 | - | - | - | - | - | 0.952 | Mlig455_017555 {REF} {Length: 1983} {TRANSSPLICED} {Pfam: Syntaxin 6, N-terminal [PF09177.13, score=106.8]; SNARE domain [PF05739.21, score=38.6]} {Human: ENSG00000135823, STX6, syntaxin 6, [RH, Score=201, Expect=1e-63]; ENSG00000104915, STX10, syntaxin 10, [RH, Score=194, Expect=7e-61]} {Mouse: ENSMUSG00000026470, Stx6, syntaxin 6, [RH, Score=201, Expect=1e-63]} {Dmel: FBgn0037084, Syx6, Syntaxin 6, [RH, Score=120, Expect=8e-32]} {Celegans: WBGene00015789, syx-6, Putative syntaxin 6, [RH, Score=66.6, Expect=9e-14]} {Smed: dd_Smed_v6_7275_0_1, dd_Smed_v6_7275_0_1, [RH, Score=143, Expect=6e-42]} {RNA1509_25518} {RNA1310_37962} {RNA815_16076} Mlig455_026850 {REF} {Length: 1898} {TRANSSPLICED} {Pfam: Syntaxin 6, N-terminal [PF09177.13, score=106.8]; SNARE domain [PF05739.21, score=38.6]} {Human: ENSG00000135823, STX6, syntaxin 6, [RH, Score=201, Expect=1e-63]; ENSG00000104915, STX10, syntaxin 10, [RH, Score=194, Expect=7e-61]} {Mouse: ENSMUSG00000026470, Stx6, syntaxin 6, [RH, Score=201, Expect=1e-63]} {Dmel: FBgn0037084, Syx6, Syntaxin 6, [RH, Score=120, Expect=8e-32]} {Celegans: WBGene00015789, syx-6, Putative syntaxin 6, [RH, Score=66.6, Expect=9e-14]} {Smed: dd_Smed_v6_7275_0_1, dd_Smed_v6_7275_0_1, [RH, Score=143, Expect=6e-42]} {RNA1509_25518, RNA1509_53823} {RNA1310_37962, RNA1509_53823} {RNA1509_53823, RNA815_16076} Mlig455_030844 {REF} {Length: 1894} {TRANSSPLICED} {Pfam: Syntaxin 6, N-terminal [PF09177.13, score=106.8]; SNARE domain [PF05739.21, score=38.6]} {Human: ENSG00000135823, STX6, syntaxin 6, [RH, Score=201, Expect=1e-63]; ENSG00000104915, STX10, syntaxin 10, [RH, Score=194, Expect=7e-61]} {Mouse: ENSMUSG00000026470, Stx6, syntaxin 6, [RH, Score=201, Expect=1e-63]} {Dmel: FBgn0037084, Syx6, Syntaxin 6, [RH, Score=120, Expect=8e-32]} {Celegans: WBGene00015789, syx-6, Putative syntaxin 6, [RH, Score=66.6, Expect=9e-14]} {Smed: dd_Smed_v6_7275_0_1, dd_Smed_v6_7275_0_1, [RH, Score=143, Expect=6e-42]} {RNA1509_25518} {RNA1310_37962} {RNA815_16076} |
| 9. | MligTC455_40382 | 81 | 1.7 | Mlig455_008892, Mlig455_016587 | Neo: - Age: Up-Down-Down |
SVOP, SVOPL | 0.951 | - | - | - | - | - | 0.951 | Mlig455_008892 {REF} {Length: 4330} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=113.2]; Sugar (and other) transporter [PF00083.26, score=80.7]} {Human: ENSG00000166111, SVOP, SV2 related protein, [RH, Score=380, Expect=4e-125]; ENSG00000157703, SVOPL, SVOP like, [RH, Score=365, Expect=5e-120]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [RH, Score=368, Expect=2e-120]; ENSMUSG00000029830, Svopl, SV2 related protein homolog (rat)-like, [RH, Score=361, Expect=2e-118]} {Dmel: FBgn0034956, CG4324, [RH, Score=314, Expect=2e-100]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [RH, Score=364, Expect=2e-119]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [RH, Score=473, Expect=1e-162]} {RNA1509_26220} {RNA1310_11596.2} {RNA815_6500} Mlig455_016587 {REF} {Length: 624} {Human: ENSG00000157703, SVOPL, SVOP like, [Score=51.6, Expect=5e-08]} {Mouse: ENSMUSG00000029830, Svopl, SV2 related protein homolog (rat)-like, [Score=50.1, Expect=1e-07]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=69.3, Expect=1e-14]} {RNA1509_26220} {RNA1310_35696} {RNA815_6500} |