M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_17812

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17812 29 0.60 Mlig455_037992

Neo: -

Age: -

Region-enriched R3: 5.811/0.00361

 Mlig455_037992 {REF} {Length: 218} {NoTransDecoderORF} {RNA815_57750}

Cumulative graph for MligTC455_17812

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -10.731 0.998 0.99971 1.00000
RegionR2 5.534 0.998 0.02870 0.19124
RegionR3 5.811 0.998 0.00008 0.00361
RegionR4 -1.459 0.998 0.96319 1.00000
RegionR5 1.789 0.998 0.29370 0.62656
RegionR6 2.161 0.998 0.26977 0.85840
RegionR7 -1.506 0.998 0.99960 1.00000
RegionR8 -1.598 0.998 0.99993 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 7.724 0.998 0.99985 1.00000
RegenerationR2 -0.471 0.998 0.54045 0.88829
RegenerationR3 0.401 0.998 0.43120 0.82177
RegenerationR4 1.324 0.998 0.38443 0.80398
RegenerationR5 2.614 0.998 0.03297 0.30283
RegenerationR6 0.696 0.998 0.74686 0.95066
RegenerationBL 1.985 0.998 0.99982 1.00000
RegenerationTP 7.522 0.998 0.00368 0.10125


Genes with expression patterns similar to MligTC455_17812

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17812 29 0.6 Mlig455_037992

Neo: -

Age: -

Region-enriched R3: 5.811/0.00361

 3 1.000 1.000 - - 1.000 - Mlig455_037992 {REF} {Length: 218} {NoTransDecoderORF} {RNA815_57750}
2. MligTC455_17401 81 1.7 Mlig455_001331, Mlig455_070592

Neo: -

Age: -

 0.994 - - - - 0.994 -

Mlig455_001331 {REF} {Length: 2397} {TRANSSPLICED} {RNA1509_21152} {RNA1310_7230} {RNA815_15379}

Mlig455_070592 {REF} {Length: 4041} {TRANSSPLICED} {RNA1509_21152, RNA1509_55944} {RNA1310_7230, RNA1509_21152, RNA1509_55944} {RNA1509_21152, RNA1509_55944, RNA815_15379}
3. MligTC455_35993 46 0.95 Mlig455_066607

Neo: -

Age: -

 0.993 - - - - 0.993 - Mlig455_066607 {REF} {Length: 721} {NoTransDecoderORF} {RNA1310_37754} {RNA815_17636}
4. MligTC455_34594 21 0.44 Mlig455_027955, Mlig455_066464

Neo: -

Age: -

 0.979 - - - - 0.979 -

Mlig455_027955 {REF} {Length: 1703} {RNA1509_38400} {RNA1310_5895.2} {RNA815_1641.1}

Mlig455_066464 {REF} {Length: 1678} {RNA1509_38400} {RNA1310_5895.2} {RNA815_1641.1}
5. MligTC455_43027 41 0.86 Mlig455_006959

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_006959 {REF} {Length: 748} {NoTransDecoderORF} {RNA1310_101532}
6. MligTC455_47532 16 0.33 Mlig455_049147

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_049147 {REF} {Length: 146} {NoTransDecoderORF} {RNA1509_31425} {RNA1310_61795}
7. MligTC455_14207 171 3.56 Mlig455_065264

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_065264 {REF} {Length: 791} {RNA1509_57286} {RNA1310_33095} {RNA815_16634}
8. MligTC455_52369 9 0.19 Mlig455_018491

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_018491 {REF} {Length: 3425} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=47.2]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=32.2]; Inhibitor of Apoptosis domain [PF00653.23, score=20.8]} {Smed: dd_Smed_v6_13661_0_1, dd_Smed_v6_13661_0_1, [Score=82.8, Expect=2e-17]} {RNA1509_9484} {RNA1310_1387.1} {RNA815_21997}
9. MligTC455_22512 144 3.01 Mlig455_021249

Neo: -

Age: Down-Up-Down

Region-enriched R5: 1.394/0.04502

 DCAF5 0.969 - - - - 0.969 - Mlig455_021249 {REF} {Length: 3184} {Pfam: WD domain, G-beta repeat [PF00400.34, score=48.0]} {Human: ENSG00000139990, DCAF5, DDB1 and CUL4 associated factor 5, [Score=207, Expect=3e-55]} {Mouse: ENSMUSG00000049106, Dcaf5, DDB1 and CUL4 associated factor 5, [Score=206, Expect=3e-55]} {Dmel: FBgn0250755, CG42233, [Score=199, Expect=1e-53]} {Celegans: WBGene00011242, R11D1.1, [RH, Score=117, Expect=3e-27]} {Smed: dd_Smed_v6_3099_0_1, dd_Smed_v6_3099_0_1, [Score=65.5, Expect=7e-11]} {RNA1509_10750} {RNA1310_849} {RNA815_4050}
10. MligTC455_20401 11443 238.4 Mlig455_013098, Mlig455_013191

Neo: -

Age: Up-Down-Up

Region-enriched R7: 5.239/0.00000
Region-enriched R8: 5.146/0.00000

Regeneration-downregulated BL: -6.183

Regeneration-depleted BL: -6.183

 0.968 - - - - 0.968 -

Mlig455_013098 {REF} {Length: 379} {RNA1509_2705} {RNA1310_107754} {RNA815_47935}

Mlig455_013191 {REF} {Length: 379} {RNA1509_2705} {RNA1310_107754} {RNA815_47935}
11. MligTC455_29597 76 1.58 Mlig455_006922, Mlig455_017936

Neo: -

Age: -

 0.966 - - - - 0.966 -

Mlig455_006922 {REF} {Length: 940} {NoTransDecoderORF} {RNA1509_52102} {RNA1310_142651} {RNA815_35011}

Mlig455_017936 {REF} {Length: 214} {NoTransDecoderORF} {RNA1310_91364}
12. MligTC455_19925 2523 52.56 Mlig455_042140, Mlig455_065838

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.311

Region-enriched R5: 4.776/0.00396

Regeneration-downregulated R5: -10.657

Regeneration-depleted R5: -10.657

 0.965 - - - - 0.965 -

Mlig455_042140 {REF} {Length: 513} {RNA1509_2632, RNA1509_3473} {RNA1310_66502.1, RNA1509_2632, RNA1509_3473} {RNA1509_2632, RNA1509_3473, RNA815_40213}

Mlig455_065838 {REF} {Length: 440} {NoTransDecoderORF} {RNA1509_3473, RNA1509_36382} {RNA1310_66502.1, RNA1509_36382} {RNA1509_36382, RNA815_40213}
13. MligTC455_28616 238 4.95 Mlig455_049157

Neo: -

Age: Down-Up-Down

 RPIA 0.963 - - - - 0.963 - Mlig455_049157 {REF} {Length: 2968} {TRANSSPLICED} {Pfam: Ribose 5-phosphate isomerase A (phosphoriboisomerase A) [PF06026.16, score=193.3]} {Human: ENSG00000153574, RPIA, ribose 5-phosphate isomerase A, [RH, Score=243, Expect=8e-80]} {Mouse: ENSMUSG00000053604, Rpia, ribose 5-phosphate isomerase A, [RH, Score=245, Expect=7e-81]} {Dmel: FBgn0050410, Rpi, Ribose-5-phosphate isomerase, [RH, Score=199, Expect=1e-63]} {Celegans: WBGene00015101, rpia-1, Probable-ribose 5-phosphate isomerase, [Score=172, Expect=2e-53]} {Smed: dd_Smed_v6_12956_0_2, dd_Smed_v6_12956_0_2, [Score=247, Expect=7e-83]} {RNA1509_29045} {RNA1310_33536.1, RNA1509_29045} {RNA1509_29045, RNA815_31077}
14. MligTC455_24151 363 7.57 Mlig455_044905, Mlig455_044958

Neo: -

Age: Down-Up-Down

 0.961 - - - - 0.961 -

Mlig455_044905 {REF} {Length: 1651} {Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=21.1]} {Dmel: FBgn0033153, Gadd45, Growth arrest and DNA damage-inducible 45, [RH, Score=45.4, Expect=3e-06]} {RNA1509_39034} {RNA1310_25805} {RNA815_10666}

Mlig455_044958 {REF} {Length: 1723} {Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=21.7]} {Dmel: FBgn0033153, Gadd45, Growth arrest and DNA damage-inducible 45, [RH, Score=46.6, Expect=1e-06]} {RNA1509_39034} {RNA1310_25805} {RNA815_10666}
15. MligTC455_11688 75 1.56 Mlig455_014596

Neo: -

Age: Up-Down-Up

 0.96 - - - - 0.960 - Mlig455_014596 {REF} {Length: 3801} {Pfam: CUB domain [PF00431.22, score=40.3]} {RNA1509_53207} {RNA1310_4616.1} {RNA815_5995}
16. MligTC455_39565 114 2.37 Mlig455_022636

Neo: -

Age: logFC(26M/2M)=0.315

 0.96 - - - - 0.960 - Mlig455_022636 {REF} {Length: 3236} {Pfam: Microtubule associated protein (MAP65/ASE1 family) [PF03999.14, score=126.8]; TATA element modulatory factor 1 TATA binding [PF12325.10, score=20.6]} {Dmel: FBgn0030242, sofe, sister of feo, [Score=52.8, Expect=5e-07]} {Smed: dd_Smed_v6_5754_0_1, dd_Smed_v6_5754_0_1, [Score=201, Expect=1e-58]} {RNA1509_15535} {RNA1310_5073.1} {RNA815_5117}
17. MligTC455_07841 177 3.69 Mlig455_056255

Neo: -

Age: -

Region-enriched R7: 4.074/0.00000
Region-enriched R8: 3.275/0.02459
Region-enriched R6: 3.034/0.00060

 MCTP2 0.958 - - - - 0.958 - Mlig455_056255 {REF} {Length: 1685} {Human: ENSG00000140563, MCTP2, multiple C2 and transmembrane domain containing 2, [Score=64.7, Expect=9e-11]} {Mouse: ENSMUSG00000032776, Mctp2, multiple C2 domains, transmembrane 2, [Score=63.9, Expect=1e-10]} {Celegans: WBGene00017063, mctp-1, Multiple C2 and Transmembrane region Protein family homolog, [Score=54.3, Expect=7e-08]} {RNA1310_26354} {RNA815_41833}
18. MligTC455_17399 133 2.78 Mlig455_001172

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.765

 0.957 - - - - 0.957 - Mlig455_001172 {REF} {Length: 3270} {TRANSSPLICED} {RNA1509_55944} {RNA1310_7230} {RNA815_15379}
19. MligTC455_20407 5467 113.89 Mlig455_054055

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.662

Region-enriched R7: 3.793/0.00000
Region-enriched R8: 3.243/0.00000

Regeneration-downregulated BL: -5.435

Regeneration-depleted BL: -5.435

 0.957 - - - - 0.957 - Mlig455_054055 {REF} {Length: 1179} {RNA1509_40983} {RNA1310_94516} {RNA815_53532}
20. MligTC455_51724 3127 65.15 Mlig455_039322

Neo: -

Age: Down-Up-Down

Region-specific R8: 8.152

Region-enriched R8: 7.173/0.00000
Region-enriched R7: 4.174/0.00000

 0.957 - - - - 0.957 - Mlig455_039322 {REF} {Length: 1511} {Smed: dd_Smed_v6_23342_0_1, dd_Smed_v6_23342_0_1, [RH, Score=55.8, Expect=2e-11]} {RNA1509_23031, RNA1509_24414} {RNA1310_57559.1, RNA1509_23031, RNA1509_24414} {RNA1509_23031, RNA1509_24414, RNA815_17881.1}
21. MligTC455_47474 125 2.6 Mlig455_008057

Neo: Int S/G2/M

Age: -

 POLR2G 0.956 - - - - 0.956 - Mlig455_008057 {REF} {Length: 2319} {Pfam: S1 RNA binding domain [PF00575.25, score=55.5]; SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 [PF03876.19, score=43.8]} {Human: ENSG00000168002, POLR2G, RNA polymerase II subunit G, [RH, Score=261, Expect=5e-90]} {Mouse: ENSMUSG00000071662, Polr2g, polymerase (RNA) II (DNA directed) polypeptide G, [RH, Score=261, Expect=3e-90]} {Dmel: FBgn0051155, Rpb7, [RH, Score=243, Expect=3e-83]} {Celegans: WBGene00021845, rpb-7, RNA Polymerase II (B) subunit, [RH, Score=243, Expect=6e-83]} {Smed: dd_Smed_v6_6411_0_1, dd_Smed_v6_6411_0_1, [RH, Score=205, Expect=4e-68]} {RNA1509_27027} {RNA1310_27629} {RNA815_7998}
22. MligTC455_47709 1872 39.01 Mlig455_047598

Neo: -

Age: logFC(26M/2M)=-0.374

 PPP3R1 0.956 - - - - 0.956 - Mlig455_047598 {REF} {Length: 1241} {TRANSSPLICED} {Pfam: EF hand [PF00036.34, score=93.2]; EF-hand domain pair [PF13499.8, score=89.0]; EF-hand domain [PF13405.8, score=74.7]; EF hand [PF13202.8, score=71.4]; EF-hand domain pair [PF13833.8, score=60.0]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=34.0]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=32.3]; EF-hand domain [PF14658.8, score=21.2]} {Human: ENSG00000221823, PPP3R1, protein phosphatase 3 regulatory subunit B, alpha, [RH, Score=282, Expect=2e-98]} {Mouse: ENSMUSG00000033953, Ppp3r1, protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I), [RH, Score=282, Expect=1e-98]} {Dmel: FBgn0015614, CanB2, Calcineurin B2, [RH, Score=274, Expect=1e-95]} {Celegans: WBGene00000554, cnb-1, Protein phosphatase 2B regulatory subunit cnb-1, [RH, Score=273, Expect=2e-95]} {Smed: dd_Smed_v6_4924_0_1, dd_Smed_v6_4924_0_1, [RH, Score=284, Expect=9e-100]} {RNA1509_11959, RNA1509_13463, RNA1509_9349} {RNA1310_27599, RNA1509_11959, RNA1509_13463, RNA1509_9349} {RNA1509_11959, RNA1509_13463, RNA1509_9349, RNA815_11356}
23. MligTC455_24803 386 8.03 Mlig455_016839

Neo: -

Age: -

Region-enriched R6: 1.959/0.04198

 0.955 - - - - 0.955 - Mlig455_016839 {REF} {Length: 1706} {Pfam: Thymosin beta-4 family [PF01290.22, score=72.0]} {Dmel: FBgn0026084, cib, ciboulot, [Score=49.3, Expect=5e-08]} {Celegans: WBGene00006649, tth-1, Thymosin beta, [Score=46.6, Expect=5e-07]} {Smed: dd_Smed_v6_12_0_1, dd_Smed_v6_12_0_1, [RH, Score=72.0, Expect=1e-17]} {RNA1509_16433} {RNA1310_47406.2} {RNA815_27242}
24. MligTC455_06503 17 0.36 Mlig455_049773

Neo: -

Age: Up-Down-Down

 0.954 - - - - 0.954 - Mlig455_049773 {REF} {Length: 1796} {Pfam: Phosphorylated CTD interacting factor 1 WW domain [PF12237.10, score=62.4]} {Smed: dd_Smed_v6_4647_0_1, dd_Smed_v6_4647_0_1, [Score=122, Expect=9e-32]} {RNA1509_28857} {RNA1310_17554.1} {RNA815_8653}
25. MligTC455_12952 9278 193.29 Mlig455_008006

Neo: -

Age: logFC(26M/2M)=-0.567

Region-enriched R7: 6.161/0.00000
Region-enriched R8: 4.467/0.00006
Region-enriched R6: 3.169/0.01307

 ENPP1 0.954 - - - - 0.954 - Mlig455_008006 {REF} {Length: 1683} {Pfam: Type I phosphodiesterase / nucleotide pyrophosphatase [PF01663.24, score=285.2]; Sulfatase [PF00884.25, score=24.1]} {Human: ENSG00000197594, ENPP1, ectonucleotide pyrophosphatase/phosphodiesterase 1, [RH, Score=279, Expect=1e-84]; ENSG00000001561, ENPP4, ectonucleotide pyrophosphatase/phosphodiesterase 4, [RH, Score=278, Expect=8e-89]; ENSG00000154269, ENPP3, ectonucleotide pyrophosphatase/phosphodiesterase 3, [RH, Score=269, Expect=9e-83]} {Mouse: ENSMUSG00000023961, Enpp4, ectonucleotide pyrophosphatase/phosphodiesterase 4, [RH, Score=275, Expect=9e-88]; ENSMUSG00000037370, Enpp1, ectonucleotide pyrophosphatase/phosphodiesterase 1, [RH, Score=272, Expect=3e-82]; ENSMUSG00000023960, Enpp5, ectonucleotide pyrophosphatase/phosphodiesterase 5, [RH, Score=267, Expect=2e-84]} {Celegans: WBGene00007755, C27A7.3, Ectonucleotide pyrophosphatase/phosphodiesterase C27A7.3, [RH, Score=169, Expect=1e-45]} {Smed: dd_Smed_v6_9016_0_1, dd_Smed_v6_9016_0_1, [Score=211, Expect=1e-62]} {RNA1509_4220, RNA1509_939} {RNA1310_11833, RNA1509_4220} {RNA1509_4220, RNA815_4584.1}
26. MligTC455_40261 132 2.74 Mlig455_037894, Mlig455_037976, Mlig455_039016

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.507

 0.953 - - - - 0.953 -

Mlig455_037894 {REF} {Length: 762} {NoTransDecoderORF} {RNA1509_45595} {RNA1310_58952} {RNA815_39402}

Mlig455_037976 {REF} {Length: 3017} {RNA1509_45595} {RNA1310_38493} {RNA815_39402}

Mlig455_039016 {REF} {Length: 2846} {RNA1509_45595} {RNA1310_38493} {RNA815_39402}
27. MligTC455_39032 286 5.97 Mlig455_066090

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.631

Region-enriched R7: 5.035/0.00000
Region-enriched R6: 4.218/0.00008
Region-enriched R8: 3.725/0.04169

 0.952 - - - - 0.952 - Mlig455_066090 {REF} {Length: 1100} {RNA1310_36475} {RNA815_20267}
28. MligTC455_43067 51 1.07 Mlig455_055748

Neo: Germline

Age: -

 PHKA1 0.951 - - - - 0.951 - Mlig455_055748 {REF} {Length: 1741} {Pfam: Glycosyl hydrolases family 15 [PF00723.23, score=48.3]; Phosphorylase b kinase C-terminal domain [PF19292.1, score=39.2]} {Human: ENSG00000067177, PHKA1, phosphorylase kinase regulatory subunit alpha 1, [Score=169, Expect=1e-45]} {Mouse: ENSMUSG00000031295, Phka2, phosphorylase kinase alpha 2, [Score=185, Expect=4e-51]} {Dmel: FBgn0030087, CG7766, [Score=220, Expect=2e-63]} {Celegans: WBGene00015754, C14B9.8, Probable phosphorylase b kinase regulatory subunit alpha, [Score=147, Expect=2e-38]} {Smed: dd_Smed_v6_6919_0_1, dd_Smed_v6_6919_0_1, [Score=280, Expect=8e-85]} {RNA1509_37081} {RNA1310_28321} {RNA815_39345}
29. MligTC455_13688 29 0.6 Mlig455_002324

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_002324 {REF} {Length: 1293} {RNA1509_35668} {RNA1310_23997.1} {RNA815_18824.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA