M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_17875

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17875 582 12.13 Mlig455_053566

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.348

 Mlig455_053566 {REF} {Length: 3008} {Pfam: Lipase (class 3) [PF01764.27, score=96.4]; Thioesterase domain [PF00975.22, score=26.1]} {Celegans: WBGene00022457, Y110A7A.7, [RH, Score=148, Expect=9e-42]} {RNA1509_14474, RNA1509_32256, RNA1509_33202} {RNA1310_18576.1, RNA1509_14474, RNA1509_32256, RNA1509_33202} {RNA1509_14474, RNA1509_32256, RNA1509_33202, RNA815_8106.1}

Cumulative graph for MligTC455_17875

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.262 3.823 0.81427 1.00000
RegionR2 -0.354 3.823 0.57632 0.93365
RegionR3 0.689 3.823 0.14803 0.65383
RegionR4 0.517 3.823 0.36588 0.68920
RegionR5 0.924 3.823 0.04166 0.16420
RegionR6 -0.923 3.823 0.10483 0.59397
RegionR7 -0.509 3.823 0.44672 1.00000
RegionR8 -0.605 3.823 0.45528 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.183 3.823 0.47607 1.00000
RegenerationR2 -1.026 3.823 0.09581 0.49123
RegenerationR3 -0.137 3.823 0.81656 0.98648
RegenerationR4 1.45 3.823 0.01648 0.20123
RegenerationR5 -0.761 3.823 0.18671 0.61744
RegenerationR6 0.988 3.823 0.13551 0.45174
RegenerationBL 0.559 3.823 0.41343 0.78280
RegenerationTP 0.6 3.823 0.42689 0.85037


Genes with expression patterns similar to MligTC455_17875

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17875 582 12.13 Mlig455_053566

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.348

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_053566 {REF} {Length: 3008} {Pfam: Lipase (class 3) [PF01764.27, score=96.4]; Thioesterase domain [PF00975.22, score=26.1]} {Celegans: WBGene00022457, Y110A7A.7, [RH, Score=148, Expect=9e-42]} {RNA1509_14474, RNA1509_32256, RNA1509_33202} {RNA1310_18576.1, RNA1509_14474, RNA1509_32256, RNA1509_33202} {RNA1509_14474, RNA1509_32256, RNA1509_33202, RNA815_8106.1}
2. MligTC455_15214 67 1.4 Mlig455_054254

Neo: Int S/G2/M

Age: Up-Up-Down, logFC(26M/2M)=1.458

Region-enriched R4: 4.867/0.00000

 TPMT 1.831 - - 0.873 0.958 - - Mlig455_054254 {REF} {Length: 1271} {Pfam: Thiopurine S-methyltransferase (TPMT) [PF05724.13, score=80.4]} {Human: ENSG00000137364, TPMT, thiopurine S-methyltransferase, [Score=75.1, Expect=5e-15]} {Mouse: ENSMUSG00000021376, Tpmt, thiopurine methyltransferase, [Score=63.5, Expect=3e-11]} {Smed: dd_Smed_v6_1495_0_1, dd_Smed_v6_1495_0_1, [RH, Score=78.2, Expect=1e-16]} {RNA1509_43164} {RNA1310_29080} {RNA815_13368}
3. MligTC455_16565 987 20.55 Mlig455_068866, Mlig455_068882

Neo: Germline

Age: -

Region-specific R4: 5.066

Region-enriched R4: 3.528/0.00001

 1.727 - - - 0.951 0.776 -

Mlig455_068866 {REF} {Length: 1232} {RNA1509_1838} {RNA1310_34604.1} {RNA815_16687}

Mlig455_068882 {REF} {Length: 1201} {RNA1509_16913, RNA1509_33904} {RNA1310_34604.1, RNA1509_33904} {RNA1509_33904, RNA815_16687}
4. MligTC455_16026 489 10.19 Mlig455_000882

Neo: Irradiation

Age: -

Region-specific R4: 5.712

Region-enriched R4: 4.237/0.00000

 1.7 - - - 0.951 0.749 - Mlig455_000882 {REF} {Length: 456} {Pfam: WSC domain [PF01822.21, score=61.7]} {RNA1509_4809} {RNA1310_856.2} {RNA815_18891.1}
5. MligTC455_35695 854 17.79 Mlig455_017387

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 4.384

Region-enriched R4: 2.719/0.00000

Regeneration-downregulated R4: -1.586

Regeneration-depleted R4: -1.586

 1.693 - - - 0.955 0.738 - Mlig455_017387 {REF} {Length: 1585} {TRANSSPLICED} {RNA1509_17993, RNA1509_18986, RNA1509_41482, RNA1509_9633} {RNA1310_11865, RNA1509_17993, RNA1509_18986, RNA1509_41482, RNA1509_9633} {RNA1509_17993, RNA1509_18986, RNA1509_41482, RNA1509_9633, RNA815_7124}
6. MligTC455_47717 665 13.84 Mlig455_004992

Neo: Int S/G2/M

Age: Down-Up-Down, logFC(26M/2M)=1.990

Region-enriched R5: 1.208/0.02519

 0.958 - - 0.958 - - - Mlig455_004992 {REF} {Length: 674} {TRANSSPLICED} {Pfam: Mitochondrial 28S ribosomal protein S32 [PF10210.11, score=28.4]} {RNA1509_9857} {RNA1310_44486.1} {RNA815_26211}
7. MligTC455_28350 662 13.79 Mlig455_067530

Neo: -

Age: Down-Up-Down

 RCCD1 0.955 - - 0.955 - - - Mlig455_067530 {REF} {Length: 2354} {TRANSSPLICED} {Pfam: Regulator of chromosome condensation (RCC1) repeat [PF00415.20, score=87.0]; Regulator of chromosome condensation (RCC1) repeat [PF13540.8, score=53.3]} {Human: ENSG00000166965, RCCD1, RCC1 domain containing 1, [RH, Score=97.8, Expect=2e-22]} {Mouse: ENSMUSG00000038930, Rccd1, RCC1 domain containing 1, [RH, Score=98.6, Expect=1e-22]} {Dmel: FBgn0038917, CG6678, [RH, Score=86.7, Expect=9e-19]} {Celegans: WBGene00010768, K11D2.1, [RH, Score=76.6, Expect=4e-16]} {Smed: dd_Smed_v6_4912_0_1, dd_Smed_v6_4912_0_1, [RH, Score=96.3, Expect=2e-22]} {RNA1509_26302} {RNA1310_19707, RNA1509_26302} {RNA1509_26302, RNA815_10526}
8. MligTC455_29541 402 8.37 Mlig455_063794

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.426

 0.955 - - 0.955 - - - Mlig455_063794 {REF} {Length: 3462} {TRANSSPLICED} {RNA1310_21809} {RNA815_37693}
9. MligTC455_52610 2169 45.19 Mlig455_008639

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.168

Region-enriched R5: 1.020/0.00000

 PA2G4 0.95 - - 0.950 - - - Mlig455_008639 {REF} {Length: 3279} {Pfam: Metallopeptidase family M24 [PF00557.26, score=72.2]} {Human: ENSG00000170515, PA2G4, proliferation-associated 2G4, [RH, Score=416, Expect=3e-144]} {Mouse: ENSMUSG00000025364, Pa2g4, proliferation-associated 2G4, [RH, Score=420, Expect=7e-146]} {Dmel: FBgn0035630, CG10576, [RH, Score=385, Expect=3e-132]} {Celegans: WBGene00021088, W08E12.7, [RH, Score=345, Expect=4e-117]} {Smed: dd_Smed_v6_2102_0_1, dd_Smed_v6_2102_0_1, [RH, Score=355, Expect=4e-121]} {RNA1509_21937} {RNA1310_16489.1} {RNA815_7518}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA