M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_17990

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_17990 303 6.32 Mlig455_016357

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.292

 DDO Mlig455_016357 {REF} {Length: 2699} {Pfam: FAD dependent oxidoreductase [PF01266.26, score=100.1]} {Human: ENSG00000203797, DDO, D-aspartate oxidase, [Score=175, Expect=3e-51]} {Mouse: ENSMUSG00000063428, Ddo, D-aspartate oxidase, [Score=163, Expect=5e-47]} {Dmel: FBgn0033543, CG12338, [Score=166, Expect=1e-48]} {Celegans: WBGene00022076, daao-1, D-amino-acid oxidase, [Score=154, Expect=6e-44]} {Smed: dd_Smed_v6_10820_0_1, dd_Smed_v6_10820_0_1, [RH, Score=151, Expect=5e-43]} {RNA1509_24842, RNA1509_39909} {RNA1310_23118, RNA1509_24842, RNA1509_39909} {RNA1509_24842, RNA1509_39909, RNA815_9714.1}

Cumulative graph for MligTC455_17990

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.702 3.148 0.34655 0.99018
RegionR2 -1.16 3.148 0.07160 0.32681
RegionR3 0.166 3.148 0.72415 1.00000
RegionR4 1.197 3.148 0.06170 0.22237
RegionR5 0.142 3.148 0.74187 1.00000
RegionR6 -0.514 3.148 0.32215 0.91126
RegionR7 -1.844 3.148 0.04337 0.40077
RegionR8 0.312 3.148 0.72041 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.298 3.148 0.34819 1.00000
RegenerationR2 0.516 3.148 0.24712 0.69459
RegenerationR3 -0.479 3.148 0.32580 0.75309
RegenerationR4 -0.253 3.148 0.62751 0.92236
RegenerationR5 -0.618 3.148 0.18134 0.61109
RegenerationR6 -0.376 3.148 0.48872 0.79825
RegenerationBL 0.502 3.148 0.47870 0.84412
RegenerationTP -0.493 3.148 0.59282 0.95627


Genes with expression patterns similar to MligTC455_17990

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_17990 303 6.32 Mlig455_016357

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.292

 DDO 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_016357 {REF} {Length: 2699} {Pfam: FAD dependent oxidoreductase [PF01266.26, score=100.1]} {Human: ENSG00000203797, DDO, D-aspartate oxidase, [Score=175, Expect=3e-51]} {Mouse: ENSMUSG00000063428, Ddo, D-aspartate oxidase, [Score=163, Expect=5e-47]} {Dmel: FBgn0033543, CG12338, [Score=166, Expect=1e-48]} {Celegans: WBGene00022076, daao-1, D-amino-acid oxidase, [Score=154, Expect=6e-44]} {Smed: dd_Smed_v6_10820_0_1, dd_Smed_v6_10820_0_1, [RH, Score=151, Expect=5e-43]} {RNA1509_24842, RNA1509_39909} {RNA1310_23118, RNA1509_24842, RNA1509_39909} {RNA1509_24842, RNA1509_39909, RNA815_9714.1}
2. MligTC455_30093 165 3.43 Mlig455_006983

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.588

 0.96 0.960 - - - - - Mlig455_006983 {REF} {Length: 1958} {Pfam: Rel homology DNA-binding domain [PF00554.24, score=60.6]; Uncharacterised protein family (UPF0172) [PF03665.15, score=18.8]} {RNA1509_55534} {RNA1310_1280.1} {RNA815_6392}
3. MligTC455_48345 152 3.17 Mlig455_016743

Neo: -

Age: logFC(26M/2M)=-0.564

 0.954 0.954 - - - - - Mlig455_016743 {REF} {Length: 2816} {TRANSSPLICED} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=22.2]} {RNA1509_12740} {RNA1310_9917} {RNA815_21671}
4. MligTC455_13629 146 3.05 Mlig455_027157

Neo: -

Age: -

Region-enriched R4: 2.939/0.03885

 0.952 - - - 0.952 - - Mlig455_027157 {REF} {Length: 670} {NoTransDecoderORF} {RNA1509_30941} {RNA1310_56359} {RNA815_19376}
5. MligTC455_26880 257 5.35 Mlig455_009661

Neo: -

Age: -

 0.951 0.951 - - - - - Mlig455_009661 {REF} {Length: 2377} {RNA1509_1897} {RNA1310_26672} {RNA815_1043.2}
6. MligTC455_47277 412 8.59 Mlig455_018100

Neo: -

Age: Down-Up-Up

 0.951 0.951 - - - - - Mlig455_018100 {REF} {Length: 909} {TRANSSPLICED} {Smed: dd_Smed_v6_40638_0_1, dd_Smed_v6_40638_0_1, [RH, Score=62.4, Expect=6e-13]} {RNA1509_34973} {RNA1310_32102.1, RNA1509_34973} {RNA1509_34973, RNA815_18828}
7. MligTC455_28492 1003 20.9 Mlig455_007973, Mlig455_009555, Mlig455_009670, Mlig455_016519, Mlig455_018882, Mlig455_023015, Mlig455_023620, Mlig455_024056, Mlig455_026048, Mlig455_031959, Mlig455_046625, Mlig455_054154, Mlig455_054171, Mlig455_059415

Neo: -

Age: -

Region-enriched R2: 1.763/0.01527

 KCNK10 0.95 0.950 - - - - -

Mlig455_007973 {REF} {Length: 4232} {RNA1509_34874} {RNA1310_13546} {RNA815_27431}

Mlig455_009555 {REF} {Length: 508} {NoTransDecoderORF} {RNA1509_34874} {RNA1310_13546} {RNA815_27431}

Mlig455_009670 {REF} {Length: 426} {NoTransDecoderORF} {RNA1509_34874} {RNA1310_13546} {RNA815_27431}

Mlig455_016519 {REF} {Length: 303} {NoTransDecoderORF} {RNA1509_34874} {RNA1310_13546} {RNA815_27431}

Mlig455_018882 {REF} {Length: 479} {NoTransDecoderORF} {RNA1509_34874} {RNA1310_13546} {RNA815_27431}

Mlig455_023015 {REF} {Length: 3155} {Pfam: Ion channel [PF07885.18, score=124.9]; Ion transport protein [PF00520.33, score=27.9]; BUD22 [PF09073.12, score=25.6]; Sodium ion transport-associated [PF06512.15, score=25.5]; FAM176 family [PF14851.8, score=23.9]; Gene product 67 [PF17634.4, score=19.2]} {Human: ENSG00000100433, KCNK10, potassium two pore domain channel subfamily K member 10, [Score=101, Expect=3e-22]; ENSG00000171303, KCNK3, potassium two pore domain channel subfamily K member 3, [Score=99.0, Expect=6e-22]} {Mouse: ENSMUSG00000049265, Kcnk3, potassium channel, subfamily K, member 3, [Score=100, Expect=1e-22]; ENSMUSG00000040901, Kcnk18, potassium channel, subfamily K, member 18, [Score=99.8, Expect=2e-22]; ENSMUSG00000033854, Kcnk10, potassium channel, subfamily K, member 10, [Score=98.2, Expect=2e-21]} {Dmel: FBgn0085425, CG34396, [RH, Score=141, Expect=1e-35]} {Celegans: WBGene00010784, twk-48, TWiK family of potassium channels, [RH, Score=187, Expect=1e-54]} {Smed: dd_Smed_v6_17586_0_1, dd_Smed_v6_17586_0_1, [Score=323, Expect=1e-106]} {RNA1509_34874} {RNA1310_28119} {RNA815_37303}

Mlig455_023620 {REF} {Length: 533} {NoTransDecoderORF} {RNA1509_34874} {RNA1310_13546} {RNA815_27431}

Mlig455_024056 {REF} {Length: 450} {RNA1509_57258} {RNA1310_13546} {RNA815_27431}

Mlig455_026048 {REF} {Length: 479} {NoTransDecoderORF} {RNA1509_34874} {RNA1310_13546} {RNA815_27431}

Mlig455_031959 {REF} {Length: 516} {NoTransDecoderORF} {RNA1509_34874} {RNA1310_13546} {RNA815_27431}

Mlig455_046625 {REF} {Length: 528} {NoTransDecoderORF} {RNA1509_34874} {RNA1310_13546} {RNA815_27431}

Mlig455_054154 {REF} {Length: 714} {NoTransDecoderORF} {RNA1509_34874} {RNA1310_13546} {RNA815_27431}

Mlig455_054171 {REF} {Length: 508} {NoTransDecoderORF} {RNA1509_34874} {RNA1310_13546} {RNA815_27431}

Mlig455_059415 {REF} {Length: 847} {TRANSSPLICED} {Pfam: Homeodomain-like domain [PF13565.8, score=25.2]; HTH domain in Mos1 transposase [PF17906.3, score=25.0]} {RNA1509_34874} {RNA1310_13546} {RNA815_27431}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA