M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_18054

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_18054 33 0.69 Mlig455_037849

Neo: -

Age: logFC(26M/2M)=-0.906

 ANK3 Mlig455_037849 {REF} {Length: 3049} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=103.1]; Ankyrin repeats (many copies) [PF13637.8, score=78.0]; Ankyrin repeat [PF13606.8, score=45.6]; Ankyrin repeat [PF00023.32, score=33.5]; Ankyrin repeats (many copies) [PF13857.8, score=33.3]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=87.0, Expect=3e-17]; ENSG00000132466, ANKRD17, ankyrin repeat domain 17, [Score=84.7, Expect=2e-16]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=87.8, Expect=1e-17]; ENSMUSG00000055204, Ankrd17, ankyrin repeat domain 17, [Score=84.7, Expect=1e-16]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=63.5, Expect=4e-10]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=72.4, Expect=4e-13]} {Smed: dd_Smed_v6_6898_0_1, dd_Smed_v6_6898_0_1, [Score=82.0, Expect=3e-16]} {RNA1509_58829} {RNA1310_29999} {RNA815_35292}

Cumulative graph for MligTC455_18054

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 3.664 1.182 0.22997 0.87351
RegionR2 1.232 1.182 0.41066 0.80403
RegionR3 0.681 1.182 0.47535 0.97964
RegionR4 2.893 1.182 0.11040 0.32857
RegionR5 -1.932 1.182 0.98139 1.00000
RegionR6 -0.685 1.182 0.88858 1.00000
RegionR7 -2.857 1.182 1.00000 1.00000
RegionR8 -2.996 1.182 0.99975 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.712 1.182 0.72521 1.00000
RegenerationR2 1.674 1.182 0.17341 0.61351
RegenerationR3 2.025 1.182 0.15876 0.59097
RegenerationR4 -1.265 1.182 0.55381 0.89380
RegenerationR5 2.427 1.182 0.10580 0.49291
RegenerationR6 3.171 1.182 0.05641 0.29810
RegenerationBL 1.546 1.182 1.00000 1.00000
RegenerationTP 5.879 1.182 0.02162 0.25069


Genes with expression patterns similar to MligTC455_18054

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_18054 33 0.69 Mlig455_037849

Neo: -

Age: logFC(26M/2M)=-0.906

 ANK3 4 1.000 1.000 - 1.000 - 1.000 Mlig455_037849 {REF} {Length: 3049} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=103.1]; Ankyrin repeats (many copies) [PF13637.8, score=78.0]; Ankyrin repeat [PF13606.8, score=45.6]; Ankyrin repeat [PF00023.32, score=33.5]; Ankyrin repeats (many copies) [PF13857.8, score=33.3]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=87.0, Expect=3e-17]; ENSG00000132466, ANKRD17, ankyrin repeat domain 17, [Score=84.7, Expect=2e-16]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=87.8, Expect=1e-17]; ENSMUSG00000055204, Ankrd17, ankyrin repeat domain 17, [Score=84.7, Expect=1e-16]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=63.5, Expect=4e-10]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=72.4, Expect=4e-13]} {Smed: dd_Smed_v6_6898_0_1, dd_Smed_v6_6898_0_1, [Score=82.0, Expect=3e-16]} {RNA1509_58829} {RNA1310_29999} {RNA815_35292}
2. MligTC455_18055 48 1 Mlig455_037951

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.998

 ANKRD50 2.873 - 0.918 - 0.983 - 0.972 Mlig455_037951 {REF} {Length: 3486} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=143.0]; Ankyrin repeats (many copies) [PF13637.8, score=109.2]; Ankyrin repeat [PF13606.8, score=63.4]; Ankyrin repeats (many copies) [PF13857.8, score=51.7]; Ankyrin repeat [PF00023.32, score=47.4]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=114, Expect=3e-25]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=114, Expect=2e-25]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=84.3, Expect=3e-16]} {Celegans: WBGene00012124, T28D6.4, [Score=71.6, Expect=1e-12]} {Smed: dd_Smed_v6_5303_0_2, dd_Smed_v6_5303_0_2, [Score=104, Expect=6e-23]} {RNA1509_58829} {RNA1310_31738} {RNA815_33130}
3. MligTC455_15647 55 1.14 Mlig455_030460

Neo: -

Age: -

 1.753 - - - 0.959 - 0.794 Mlig455_030460 {REF} {Length: 3324} {Smed: dd_Smed_v6_12269_0_1, dd_Smed_v6_12269_0_1, [RH, Score=61.2, Expect=5e-10]} {RNA1509_50317} {RNA1310_26677} {RNA815_35533}
4. MligTC455_18900 156 3.26 Mlig455_039299, Mlig455_054447

Neo: -

Age: Up-Down-Down

Region-enriched R2: 4.913/0.00230

 1 - - - 1.000 - -

Mlig455_039299 {REF} {Length: 1712} {RNA1310_23535} {RNA815_25250}

Mlig455_054447 {REF} {Length: 1707} {Smed: dd_Smed_v6_13268_0_1, dd_Smed_v6_13268_0_1, [RH, Score=43.9, Expect=1e-06]} {RNA1310_23535} {RNA815_25250}
5. MligTC455_29536 5 0.1 Mlig455_052141

Neo: -

Age: Up-Down-Down

 ANKRD50 0.987 - - - 0.987 - - Mlig455_052141 {REF} {Length: 3016} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=68.4]; Ankyrin repeats (many copies) [PF13637.8, score=54.0]; Ankyrin repeat [PF13606.8, score=53.2]; Ankyrin repeats (many copies) [PF13857.8, score=49.3]; Mab-21 protein [PF03281.16, score=38.8]; Ankyrin repeat [PF00023.32, score=36.1]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=69.7, Expect=2e-11]; ENSG00000132466, ANKRD17, ankyrin repeat domain 17, [Score=69.3, Expect=4e-11]; ENSG00000170921, TANC2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=66.6, Expect=2e-10]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=72.4, Expect=2e-12]; ENSMUSG00000078487, Ankrd65, ankyrin repeat domain 65, [Score=72.0, Expect=9e-13]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=74.7, Expect=3e-13]} {Celegans: WBGene00011240, R11A8.7, Ankyrin repeat and KH domain-containing protein R11A8.7, [Score=73.2, Expect=7e-13]} {Smed: dd_Smed_v6_6779_0_1, dd_Smed_v6_6779_0_1, [Score=79.7, Expect=6e-15]} {RNA1509_27730} {RNA1310_21755.1} {RNA815_2426.1}
6. MligTC455_17479 32 0.66 Mlig455_032081, Mlig455_070278

Neo: -

Age: logFC(26M/2M)=-0.516

 CHRNA3 0.985 - - - 0.985 - -

Mlig455_032081 {REF} {Length: 2787} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=230.7]; Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=221.4]} {Human: ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=368, Expect=1e-121]; ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=366, Expect=5e-121]} {Mouse: ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=378, Expect=6e-126]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=361, Expect=3e-119]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=461, Expect=3e-158]} {Celegans: WBGene00006797, unc-63, Acetylcholine receptor subunit alpha-type unc-63, [Score=381, Expect=3e-127]} {Smed: dd_Smed_v6_9799_0_1, dd_Smed_v6_9799_0_1, [Score=614, Expect=0.0]} {RNA1509_28642} {RNA1310_34709} {RNA815_44960}

Mlig455_070278 {REF} {Length: 2270} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=232.1]; Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=221.2]} {Human: ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=369, Expect=7e-122]; ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=366, Expect=4e-121]} {Mouse: ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=378, Expect=9e-126]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=362, Expect=1e-119]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=461, Expect=3e-158]} {Celegans: WBGene00006797, unc-63, Acetylcholine receptor subunit alpha-type unc-63, [Score=382, Expect=2e-127]} {Smed: dd_Smed_v6_9799_0_1, dd_Smed_v6_9799_0_1, [Score=616, Expect=0.0]} {RNA1509_16247} {RNA1310_34709} {RNA815_44960}
7. MligTC455_51648 71 1.49 Mlig455_055670

Neo: -

Age: Down-Down-Up

 0.983 - - - 0.983 - - Mlig455_055670 {REF} {Length: 3196} {Pfam: Integrase core domain [PF00665.28, score=19.1]; Integrase core domain [PF13683.8, score=19.0]} {Smed: dd_Smed_v6_94688_0_1, dd_Smed_v6_94688_0_1, [Score=77.4, Expect=4e-18]} {RNA1509_24311} {RNA1310_35472} {RNA815_10275}
8. MligTC455_12248 18 0.37 Mlig455_029283

Neo: -

Age: -

 NMBR 0.98 - - - 0.980 - - Mlig455_029283 {REF} {Length: 3230} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=106.2]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=35.9]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=35.7]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=20.8]} {Human: ENSG00000135577, NMBR, neuromedin B receptor, [Score=123, Expect=2e-30]} {Mouse: ENSMUSG00000019865, Nmbr, neuromedin B receptor, [Score=120, Expect=1e-29]} {Dmel: FBgn0038880, SIFaR, SIFamide receptor, [Score=106, Expect=3e-24]} {Celegans: WBGene00009619, npr-6, NeuroPeptide Receptor family, [Score=77.8, Expect=3e-15]} {Smed: dd_Smed_v6_17567_0_1, dd_Smed_v6_17567_0_1, [Score=127, Expect=2e-32]} {RNA1310_66264}
9. MligTC455_17137 35 0.74 Mlig455_057097

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.464

 0.974 - - - 0.974 - - Mlig455_057097 {REF} {Length: 2458} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=47.0]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=32.2]} {Mouse: ENSMUSG00000058400, Qrfpr, pyroglutamylated RFamide peptide receptor, [Score=53.1, Expect=3e-07]} {Dmel: FBgn0053696, CNMaR, CNMamide Receptor, [Score=62.4, Expect=3e-10]} {Celegans: WBGene00020586, frpr-18, FLP-2 receptor; FMRFamide Peptide Receptor family, [Score=63.9, Expect=7e-11]} {Smed: dd_Smed_v6_12500_0_1, dd_Smed_v6_12500_0_1, [Score=236, Expect=2e-73]} {RNA1310_39525} {RNA815_20959}
10. MligTC455_11957 20 0.41 Mlig455_019238

Neo: -

Age: -

 0.967 - - - 0.967 - - Mlig455_019238 {REF} {Length: 956} {RNA1509_48973} {RNA1310_39954.1} {RNA815_19596}
11. MligTC455_10494 47 0.99 Mlig455_004089

Neo: -

Age: -

 0.965 - - - - - 0.965 Mlig455_004089 {REF} {Length: 1066} {NoTransDecoderORF} {RNA1509_33736, RNA1509_5254} {RNA1310_1907, RNA1509_33736} {RNA1509_33736, RNA815_571}
12. MligTC455_14519 25 0.51 Mlig455_005304

Neo: -

Age: -

 0.964 - - - 0.964 - - Mlig455_005304 {REF} {Length: 1686} {RNA1509_3030} {RNA1310_65512} {RNA815_48423}
13. MligTC455_51312 38 0.8 Mlig455_015513

Neo: -

Age: -

 0.964 - - - 0.964 - - Mlig455_015513 {REF} {Length: 670} {RNA1509_39535} {RNA1310_86982} {RNA815_28901}
14. MligTC455_37991 22 0.46 Mlig455_018140

Neo: -

Age: -

 0.961 - - - 0.961 - - Mlig455_018140 {REF} {Length: 2598} {Pfam: EF-hand domain pair [PF13499.8, score=36.8]; EF-hand domain [PF13405.8, score=31.2]; EF hand [PF00036.34, score=29.3]; EF-hand domain pair [PF13833.8, score=20.5]; EF hand [PF13202.8, score=19.4]} {Smed: dd_Smed_v6_1010_0_1, dd_Smed_v6_1010_0_1, [Score=104, Expect=1e-26]} {RNA1310_31713.2} {RNA815_36423}
15. MligTC455_03350 34 0.71 Mlig455_016875

Neo: -

Age: -

 JMJD6 0.96 - - - 0.960 - - Mlig455_016875 {REF} {Length: 1862} {Pfam: JmjC domain, hydroxylase [PF02373.24, score=80.0]; Cupin-like domain [PF13621.8, score=71.6]} {Human: ENSG00000070495, JMJD6, jumonji domain containing 6, arginine demethylase and lysine hydroxylase, [RH, Score=456, Expect=1e-159]} {Mouse: ENSMUSG00000056962, Jmjd6, jumonji domain containing 6, [RH, Score=450, Expect=2e-157]} {Dmel: FBgn0038948, PSR, phosphatidylserine receptor, [RH, Score=441, Expect=4e-154]} {Celegans: WBGene00004205, psr-1, Bifunctional arginine demethylase and lysyl-hydroxylase psr-1, [RH, Score=372, Expect=3e-127]} {Smed: dd_Smed_v6_5446_0_1, dd_Smed_v6_5446_0_1, [RH, Score=444, Expect=1e-155]} {RNA1509_11963} {RNA1310_22854, RNA1509_11963} {RNA1509_11963, RNA815_8433.1}
16. MligTC455_14674 175 3.64 Mlig455_013324

Neo: -

Age: -

Region-enriched R6: 4.810/0.00000

Regeneration-downregulated R6: -2.914

Regeneration-depleted R6: -2.914

 0.959 - - - - - 0.959 Mlig455_013324 {REF} {Length: 1109} {NoTransDecoderORF} {RNA1509_40644} {RNA1310_53055, RNA1509_40644} {RNA1509_40644, RNA815_31888}
17. MligTC455_19526 40 0.84 Mlig455_032263

Neo: -

Age: -

Region-enriched R5: 4.476/0.00075

 0.958 - - - 0.958 - - Mlig455_032263 {REF} {Length: 986} {RNA1509_59284} {RNA1310_56370} {RNA815_27780}
18. MligTC455_17340 117 2.43 Mlig455_056518

Neo: -

Age: -

 CHRNA3 0.956 - - - 0.956 - - Mlig455_056518 {REF} {Length: 2896} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=68.3]} {Human: ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=63.9, Expect=1e-11]} {Mouse: ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=59.7, Expect=2e-10]; ENSMUSG00000035594, Chrna5, cholinergic receptor, nicotinic, alpha polypeptide 5, [Score=59.3, Expect=3e-10]; ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=57.0, Expect=2e-09]} {Dmel: FBgn0086778, nAChRalpha7, nicotinic Acetylcholine Receptor alpha7, [Score=63.5, Expect=7e-12]} {Celegans: WBGene00001133, eat-2, Neuronal acetylcholine receptor subunit eat-2, [Score=56.2, Expect=2e-09]} {Smed: dd_Smed_v6_8058_0_1, dd_Smed_v6_8058_0_1, [Score=56.2, Expect=1e-09]} {RNA1509_7752} {RNA1310_57458} {RNA815_42787}
19. MligTC455_20519 7 0.15 Mlig455_028805

Neo: -

Age: -

 0.953 - - - 0.953 - - Mlig455_028805 {REF} {Length: 911} {RNA1509_20946} {RNA1310_96877} {RNA815_50428}
20. MligTC455_29238 48 1.01 Mlig455_063305

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_063305 {REF} {Length: 892} {TRANSSPLICED} {RNA1310_67367} {RNA815_37220}
21. MligTC455_38578 34 0.71 Mlig455_039970, Mlig455_070840

Neo: -

Age: -

 0.951 - - - 0.951 - -

Mlig455_039970 {REF} {Length: 1523} {TRANSSPLICED} {Pfam: Protein phosphatase inhibitor 2 (IPP-2) [PF04979.16, score=21.3]} {RNA1310_21615.2} {RNA815_35576}

Mlig455_070840 {REF} {Length: 1809} {TRANSSPLICED} {Pfam: Protein phosphatase inhibitor 2 (IPP-2) [PF04979.16, score=21.3]} {RNA1310_21615.1} {RNA815_35576}
22. MligTC455_12452 172 3.59 Mlig455_043512

Neo: -

Age: -

Region-enriched R2: 6.359/0.00008

 0.95 - - - 0.950 - - Mlig455_043512 {REF} {Length: 678} {RNA1310_67692} {RNA815_34969}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA