TomoSeq data search

Data search

Results for MligTC455_18728

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_18728	2064	42.99	Mlig455_000218, Mlig455_058477	Neo: - Age: -	BEST3	Mlig455_000218 {REF} {Length: 3115} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=132.8]} {Human: ENSG00000127325, BEST3, bestrophin 3, [Score=120, Expect=2e-29]; ENSG00000039987, BEST2, bestrophin 2, [Score=115, Expect=3e-27]} {Mouse: ENSMUSG00000020169, Best3, bestrophin 3, [Score=123, Expect=9e-30]; ENSMUSG00000052819, Best2, bestrophin 2, [Score=118, Expect=2e-28]} {Dmel: FBgn0035696, Best2, Bestrophin 2, [Score=116, Expect=2e-27]} {Celegans: WBGene00007203, best-1, Bestrophin homolog 1, [Score=101, Expect=3e-23]} {Smed: dd_Smed_v6_3859_0_1, dd_Smed_v6_3859_0_1, [Score=169, Expect=5e-47]} {RNA1509_9222} {RNA1310_4573.2} {RNA815_2015} Mlig455_058477 {REF} {Length: 2582} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=146.5]} {Human: ENSG00000127325, BEST3, bestrophin 3, [Score=90.5, Expect=2e-18]; ENSG00000142959, BEST4, bestrophin 4, [Score=89.7, Expect=2e-18]; ENSG00000039987, BEST2, bestrophin 2, [Score=86.3, Expect=3e-17]} {Mouse: ENSMUSG00000020169, Best3, bestrophin 3, [Score=90.9, Expect=1e-18]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=105, Expect=1e-23]} {Celegans: WBGene00015288, best-4, Bestrophin homolog, [Score=91.3, Expect=3e-19]} {Smed: dd_Smed_v6_3859_0_1, dd_Smed_v6_3859_0_1, [Score=210, Expect=2e-61]} {RNA1509_38172, RNA1509_9222} {RNA1310_4573.1, RNA1509_38172} {RNA1509_38172, RNA815_2015}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_18728

2064

42.99

Mlig455_000218, Mlig455_058477

Neo: -

Age: -

BEST3

Mlig455_000218 {REF} {Length: 3115} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=132.8]} {Human: ENSG00000127325, BEST3, bestrophin 3, [Score=120, Expect=2e-29]; ENSG00000039987, BEST2, bestrophin 2, [Score=115, Expect=3e-27]} {Mouse: ENSMUSG00000020169, Best3, bestrophin 3, [Score=123, Expect=9e-30]; ENSMUSG00000052819, Best2, bestrophin 2, [Score=118, Expect=2e-28]} {Dmel: FBgn0035696, Best2, Bestrophin 2, [Score=116, Expect=2e-27]} {Celegans: WBGene00007203, best-1, Bestrophin homolog 1, [Score=101, Expect=3e-23]} {Smed: dd_Smed_v6_3859_0_1, dd_Smed_v6_3859_0_1, [Score=169, Expect=5e-47]} {RNA1509_9222} {RNA1310_4573.2} {RNA815_2015}

Mlig455_058477 {REF} {Length: 2582} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=146.5]} {Human: ENSG00000127325, BEST3, bestrophin 3, [Score=90.5, Expect=2e-18]; ENSG00000142959, BEST4, bestrophin 4, [Score=89.7, Expect=2e-18]; ENSG00000039987, BEST2, bestrophin 2, [Score=86.3, Expect=3e-17]} {Mouse: ENSMUSG00000020169, Best3, bestrophin 3, [Score=90.9, Expect=1e-18]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=105, Expect=1e-23]} {Celegans: WBGene00015288, best-4, Bestrophin homolog, [Score=91.3, Expect=3e-19]} {Smed: dd_Smed_v6_3859_0_1, dd_Smed_v6_3859_0_1, [Score=210, Expect=2e-61]} {RNA1509_38172, RNA1509_9222} {RNA1310_4573.1, RNA1509_38172} {RNA1509_38172, RNA815_2015}

Cumulative graph for MligTC455_18728

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	0.528	5.466	0.43002	1.00000
RegionR2	-0.462	5.466	0.33350	0.72517
RegionR3	-0.265	5.466	0.52868	1.00000
RegionR4	-0.695	5.466	0.14604	0.39283
RegionR5	0.466	5.466	0.24524	0.55859
RegionR6	0.251	5.466	0.53969	1.00000
RegionR7	-0.235	5.466	0.60269	1.00000
RegionR8	0.412	5.466	0.38361	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-4.146	5.466	0.00080	0.16280
RegenerationR2	-0.551	5.466	0.28590	0.72870
RegenerationR3	-0.146	5.466	0.77934	0.97488
RegenerationR4	-0.337	5.466	0.52611	0.88259
RegenerationR5	-0.769	5.466	0.13249	0.53998
RegenerationR6	-0.976	5.466	0.07040	0.33204
RegenerationBL	-0.923	5.466	0.06897	0.30538
RegenerationTP	-1.097	5.466	0.04283	0.34343

Genes with expression patterns similar to MligTC455_18728

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_18728	2064	42.99	Mlig455_000218, Mlig455_058477	Neo: - Age: -	BEST3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_000218 {REF} {Length: 3115} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=132.8]} {Human: ENSG00000127325, BEST3, bestrophin 3, [Score=120, Expect=2e-29]; ENSG00000039987, BEST2, bestrophin 2, [Score=115, Expect=3e-27]} {Mouse: ENSMUSG00000020169, Best3, bestrophin 3, [Score=123, Expect=9e-30]; ENSMUSG00000052819, Best2, bestrophin 2, [Score=118, Expect=2e-28]} {Dmel: FBgn0035696, Best2, Bestrophin 2, [Score=116, Expect=2e-27]} {Celegans: WBGene00007203, best-1, Bestrophin homolog 1, [Score=101, Expect=3e-23]} {Smed: dd_Smed_v6_3859_0_1, dd_Smed_v6_3859_0_1, [Score=169, Expect=5e-47]} {RNA1509_9222} {RNA1310_4573.2} {RNA815_2015} Mlig455_058477 {REF} {Length: 2582} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=146.5]} {Human: ENSG00000127325, BEST3, bestrophin 3, [Score=90.5, Expect=2e-18]; ENSG00000142959, BEST4, bestrophin 4, [Score=89.7, Expect=2e-18]; ENSG00000039987, BEST2, bestrophin 2, [Score=86.3, Expect=3e-17]} {Mouse: ENSMUSG00000020169, Best3, bestrophin 3, [Score=90.9, Expect=1e-18]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=105, Expect=1e-23]} {Celegans: WBGene00015288, best-4, Bestrophin homolog, [Score=91.3, Expect=3e-19]} {Smed: dd_Smed_v6_3859_0_1, dd_Smed_v6_3859_0_1, [Score=210, Expect=2e-61]} {RNA1509_38172, RNA1509_9222} {RNA1310_4573.1, RNA1509_38172} {RNA1509_38172, RNA815_2015}
2.	MligTC455_34286	641	13.35	Mlig455_057009	Neo: - Age: -		1.732	-	-	0.950	-	-	0.782	Mlig455_057009 {REF} {Length: 1242} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_35262} {RNA1310_20897, RNA1509_35262} {RNA1509_35262, RNA815_22915.1}
3.	MligTC455_46889	3516	73.26	Mlig455_023304	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.585 Regeneration-depleted TP: -1.241 Regeneration-depleted BL: -1.085	SLC25A14	0.973	-	-	0.973	-	-	-	Mlig455_023304 {REF} {Length: 5464} {Pfam: Mitochondrial carrier protein [PF00153.29, score=159.1]} {Human: ENSG00000102078, SLC25A14, solute carrier family 25 member 14, [Score=216, Expect=1e-68]; ENSG00000174032, SLC25A30, solute carrier family 25 member 30, [Score=213, Expect=2e-68]} {Mouse: ENSMUSG00000031105, Slc25a14, solute carrier family 25 (mitochondrial carrier, brain), member 14, [Score=218, Expect=2e-69]; ENSMUSG00000022003, Slc25a30, solute carrier family 25, member 30, [Score=213, Expect=6e-68]} {Dmel: FBgn0036199, Bmcp, [Score=186, Expect=2e-57]} {Celegans: WBGene00015186, misc-1, MItochondrial Solute Carrier, [Score=137, Expect=1e-38]} {Smed: dd_Smed_v6_8945_0_8, dd_Smed_v6_8945_0_8, [Score=186, Expect=1e-57]} {RNA1509_20867, RNA1509_23992} {RNA1310_10029, RNA1509_20867, RNA1509_23992} {RNA1509_20867, RNA1509_23992, RNA815_7763.1}
4.	MligTC455_46888	3493	72.77	Mlig455_023236	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.334 Regeneration-downregulated TP: -1.196 Regeneration-depleted TP: -1.196	SLC25A14	0.97	-	-	0.970	-	-	-	Mlig455_023236 {REF} {Length: 4876} {Pfam: Mitochondrial carrier protein [PF00153.29, score=159.1]} {Human: ENSG00000102078, SLC25A14, solute carrier family 25 member 14, [Score=216, Expect=1e-68]; ENSG00000174032, SLC25A30, solute carrier family 25 member 30, [Score=213, Expect=2e-68]} {Mouse: ENSMUSG00000031105, Slc25a14, solute carrier family 25 (mitochondrial carrier, brain), member 14, [Score=218, Expect=2e-69]; ENSMUSG00000022003, Slc25a30, solute carrier family 25, member 30, [Score=213, Expect=6e-68]} {Dmel: FBgn0036199, Bmcp, [Score=186, Expect=2e-57]} {Celegans: WBGene00015186, misc-1, MItochondrial Solute Carrier, [Score=137, Expect=1e-38]} {Smed: dd_Smed_v6_8945_0_8, dd_Smed_v6_8945_0_8, [Score=186, Expect=1e-57]} {RNA1509_23992, RNA1509_51810} {RNA1310_10029, RNA1509_51810} {RNA1509_51810, RNA815_7763.1}