M. lignano Tomo-Seq
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Results for MligTC455_19006

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_19006 175 3.64 Mlig455_014221, Mlig455_070566

Neo: -

Age: -

Mlig455_014221 {REF} {Length: 593} {NoTransDecoderORF} {RNA1509_13939} {RNA1310_140648} {RNA815_4278}

Mlig455_070566 {REF} {Length: 522} {NoTransDecoderORF} {RNA1509_13939} {RNA1310_140648} {RNA815_4278}

Cumulative graph for MligTC455_19006

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.691 2.46 0.39669 1.00000
RegionR2 -2.869 2.46 1.00000 1.00000
RegionR3 0.533 2.46 0.69318 1.00000
RegionR4 0.78 2.46 0.63763 0.94413
RegionR5 1.82 2.46 0.21644 0.51603
RegionR6 1.989 2.46 0.21112 0.78861
RegionR7 0.5 2.46 0.72035 1.00000
RegionR8 1.939 2.46 0.36524 0.99932

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.956 2.46 1.00000 1.00000
RegenerationR2 -1.298 2.46 0.48387 0.86472
RegenerationR3 -0.698 2.46 0.67482 0.93863
RegenerationR4 0.238 2.46 0.88682 1.00000
RegenerationR5 0.503 2.46 0.75032 0.97213
RegenerationR6 -1.732 2.46 0.32083 0.66733
RegenerationBL 0.182 2.46 0.91925 1.00000
RegenerationTP -2.103 2.46 0.32833 0.77280


Genes with expression patterns similar to MligTC455_19006

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_19006 175 3.64 Mlig455_014221, Mlig455_070566

Neo: -

Age: -

 5 1.000 1.000 1.000 - 1.000 1.000

Mlig455_014221 {REF} {Length: 593} {NoTransDecoderORF} {RNA1509_13939} {RNA1310_140648} {RNA815_4278}

Mlig455_070566 {REF} {Length: 522} {NoTransDecoderORF} {RNA1509_13939} {RNA1310_140648} {RNA815_4278}
2. MligTC455_13807 36 0.75 Mlig455_038628

Neo: -

Age: Down-Down-Up

 0.957 - - - - - 0.957 Mlig455_038628 {REF} {Length: 4304} {RNA1509_41798} {RNA1310_24413} {RNA815_8731.1}
3. MligTC455_50476 452 9.42 Mlig455_022335

Neo: -

Age: -

Region-enriched R4: 1.510/0.04903

 RNF25 0.952 - - - - 0.952 - Mlig455_022335 {REF} {Length: 3061} {TRANSSPLICED} {Pfam: RWD domain [PF05773.24, score=54.2]; RING-like zinc finger [PF17123.7, score=33.5]; Ring finger domain [PF13639.8, score=29.5]; RING-type zinc-finger [PF13445.8, score=25.6]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.5]; zinc-RING finger domain [PF14634.8, score=21.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=20.6]} {Human: ENSG00000163481, RNF25, ring finger protein 25, [RH, Score=118, Expect=2e-28]} {Mouse: ENSMUSG00000026171, Rnf25, ring finger protein 25, [RH, Score=124, Expect=8e-31]} {Dmel: FBgn0033884, CG13344, [RH, Score=90.9, Expect=1e-19]} {Celegans: WBGene00021812, Y53G8AR.5, [RH, Score=54.3, Expect=6e-08]} {RNA1509_47149, RNA1509_6393} {RNA1310_23335, RNA1509_47149} {RNA1509_47149, RNA815_3992.1}
4. MligTC455_26700 1248 26.01 Mlig455_009622

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.481

Region-enriched R5: 1.730/0.00009

Regeneration-upregulated TP: 2.304

Regeneration-enriched TP: 2.304

 RPN2 0.95 - - 0.950 - - - Mlig455_009622 {REF} {Length: 4305} {TRANSSPLICED} {Pfam: Oligosaccharyltransferase subunit Ribophorin II [PF05817.16, score=573.4]} {Human: ENSG00000118705, RPN2, ribophorin II, [RH, Score=308, Expect=2e-95]} {Mouse: ENSMUSG00000027642, Rpn2, ribophorin II, [RH, Score=304, Expect=4e-94]} {Dmel: FBgn0034277, OstDelta, Oligosaccharide transferase Delta subunit, [RH, Score=296, Expect=2e-91]} {Celegans: WBGene00019693, ostd-1, Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2, [RH, Score=178, Expect=4e-51]} {Smed: dd_Smed_v6_538_0_1, dd_Smed_v6_538_0_1, [RH, Score=318, Expect=9e-100]} {RNA1509_27563, RNA1509_37461, RNA1509_8958} {RNA1310_8527.1, RNA1509_27563, RNA1509_37461, RNA1509_8958} {RNA1509_27563, RNA1509_37461, RNA1509_8958, RNA815_2829}

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