M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_19118

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_19118 325 6.77 Mlig455_067203

Neo: -

Age: -

Region-enriched R5: 1.711/0.04365

 PPARG Mlig455_067203 {REF} {Length: 7386} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=75.8]} {Human: ENSG00000132170, PPARG, peroxisome proliferator activated receptor gamma, [Score=87.0, Expect=3e-17]; ENSG00000077092, RARB, retinoic acid receptor beta, [Score=84.0, Expect=2e-16]; ENSG00000174738, NR1D2, nuclear receptor subfamily 1 group D member 2, [Score=84.0, Expect=4e-16]; ENSG00000186951, PPARA, peroxisome proliferator activated receptor alpha, [Score=84.0, Expect=3e-16]} {Mouse: ENSMUSG00000000440, Pparg, peroxisome proliferator activated receptor gamma, [Score=86.7, Expect=2e-17]; ENSMUSG00000022383, Ppara, peroxisome proliferator activated receptor alpha, [Score=84.0, Expect=2e-16]; ENSMUSG00000017491, Rarb, retinoic acid receptor, beta, [Score=83.6, Expect=2e-16]; ENSMUSG00000021775, Nr1d2, nuclear receptor subfamily 1, group D, member 2, [Score=83.2, Expect=4e-16]; ENSMUSG00000032238, Rora, RAR-related orphan receptor alpha, [Score=82.4, Expect=6e-16]} {Dmel: FBgn0000568, Eip75B, Ecdysone-induced protein 75B, [Score=87.4, Expect=2e-17]} {Celegans: WBGene00003675, nhr-85, Nuclear hormone receptor family member nhr-85, [Score=95.1, Expect=3e-20]} {Smed: dd_Smed_v6_9282_0_1, dd_Smed_v6_9282_0_1, [Score=89.7, Expect=2e-18]} {RNA1509_38740, RNA1509_48038} {RNA1310_7654.1, RNA1509_38740, RNA1509_48038} {RNA1509_38740, RNA1509_48038, RNA815_7540}

Cumulative graph for MligTC455_19118

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.304 3.173 0.09842 0.66378
RegionR2 0.237 3.173 0.75203 1.00000
RegionR3 -0.599 3.173 0.96496 1.00000
RegionR4 1.911 3.173 0.01694 0.09051
RegionR5 1.711 3.173 0.00681 0.04365
RegionR6 0.874 3.173 0.29824 0.88999
RegionR7 1.077 3.173 0.23446 0.85880
RegionR8 1.094 3.173 0.28405 0.91109

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.166 3.173 1.00000 1.00000
RegenerationR2 -0.094 3.173 0.83905 1.00000
RegenerationR3 0.902 3.173 0.12725 0.54898
RegenerationR4 -0.864 3.173 0.12562 0.53899
RegenerationR5 -0.657 3.173 0.16640 0.59261
RegenerationR6 -0.72 3.173 0.21753 0.56169
RegenerationBL -0.197 3.173 0.74748 1.00000
RegenerationTP -0.965 3.173 0.17225 0.60473


Genes with expression patterns similar to MligTC455_19118

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_19118 325 6.77 Mlig455_067203

Neo: -

Age: -

Region-enriched R5: 1.711/0.04365

 PPARG 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_067203 {REF} {Length: 7386} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=75.8]} {Human: ENSG00000132170, PPARG, peroxisome proliferator activated receptor gamma, [Score=87.0, Expect=3e-17]; ENSG00000077092, RARB, retinoic acid receptor beta, [Score=84.0, Expect=2e-16]; ENSG00000174738, NR1D2, nuclear receptor subfamily 1 group D member 2, [Score=84.0, Expect=4e-16]; ENSG00000186951, PPARA, peroxisome proliferator activated receptor alpha, [Score=84.0, Expect=3e-16]} {Mouse: ENSMUSG00000000440, Pparg, peroxisome proliferator activated receptor gamma, [Score=86.7, Expect=2e-17]; ENSMUSG00000022383, Ppara, peroxisome proliferator activated receptor alpha, [Score=84.0, Expect=2e-16]; ENSMUSG00000017491, Rarb, retinoic acid receptor, beta, [Score=83.6, Expect=2e-16]; ENSMUSG00000021775, Nr1d2, nuclear receptor subfamily 1, group D, member 2, [Score=83.2, Expect=4e-16]; ENSMUSG00000032238, Rora, RAR-related orphan receptor alpha, [Score=82.4, Expect=6e-16]} {Dmel: FBgn0000568, Eip75B, Ecdysone-induced protein 75B, [Score=87.4, Expect=2e-17]} {Celegans: WBGene00003675, nhr-85, Nuclear hormone receptor family member nhr-85, [Score=95.1, Expect=3e-20]} {Smed: dd_Smed_v6_9282_0_1, dd_Smed_v6_9282_0_1, [Score=89.7, Expect=2e-18]} {RNA1509_38740, RNA1509_48038} {RNA1310_7654.1, RNA1509_38740, RNA1509_48038} {RNA1509_38740, RNA1509_48038, RNA815_7540}
2. MligTC455_49582 945 19.68 Mlig455_000694, Mlig455_000752

Neo: -

Age: -

 WDR59 0.961 - - - - 0.961 -

Mlig455_000694 {REF} {Length: 3628} {Pfam: Zinc-ribbon, C4HC2 type [PF17120.7, score=36.0]; Zinc-ribbon like family [PF17034.7, score=23.4]} {Human: ENSG00000103091, WDR59, WD repeat domain 59, [Score=129, Expect=1e-29]} {Mouse: ENSMUSG00000031959, Wdr59, WD repeat domain 59, [Score=78.2, Expect=4e-14]} {Dmel: FBgn0032339, Wdr59, WD repeat domain 59, [Score=62.0, Expect=2e-09]} {Smed: dd_Smed_v6_10474_0_1, dd_Smed_v6_10474_0_1, [RH, Score=75.1, Expect=7e-14]} {RNA1509_30925} {RNA1310_13440.1} {RNA815_36398}

Mlig455_000752 {REF} {Length: 4336} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=35.8]; Zinc-ribbon, C4HC2 type [PF17120.7, score=35.7]; Zinc-ribbon like family [PF17034.7, score=21.4]} {Human: ENSG00000103091, WDR59, WD repeat domain 59, [RH, Score=177, Expect=3e-46]} {Mouse: ENSMUSG00000031959, Wdr59, WD repeat domain 59, [RH, Score=177, Expect=1e-44]} {Dmel: FBgn0032339, Wdr59, WD repeat domain 59, [RH, Score=149, Expect=2e-36]} {Smed: dd_Smed_v6_10474_0_1, dd_Smed_v6_10474_0_1, [RH, Score=74.3, Expect=2e-13]} {RNA1509_25124, RNA1509_30925} {RNA1310_11304, RNA1509_30925} {RNA1509_30925, RNA815_30613}
3. MligTC455_25198 3667 76.39 Mlig455_032814

Neo: -

Age: logFC(26M/2M)=0.620

 SREBF2 0.953 - - - - 0.953 - Mlig455_032814 {REF} {Length: 5146} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=44.6]} {Human: ENSG00000198911, SREBF2, sterol regulatory element binding transcription factor 2, [RH, Score=113, Expect=1e-24]} {Mouse: ENSMUSG00000022463, Srebf2, sterol regulatory element binding factor 2, [RH, Score=129, Expect=1e-29]} {Dmel: FBgn0261283, SREBP, Sterol regulatory element binding protein, [Score=101, Expect=3e-21]} {Celegans: WBGene00004735, sbp-1, Sterol regulatory element Binding Protein, [RH, Score=53.1, Expect=1e-06]} {Smed: dd_Smed_v6_3641_0_1, dd_Smed_v6_3641_0_1, [RH, Score=68.9, Expect=1e-11]} {RNA1509_1880, RNA1509_19827, RNA1509_22157, RNA1509_49584, RNA1509_54173, RNA1509_5867, RNA1509_58955} {RNA1310_3348, RNA1509_1880, RNA1509_19827, RNA1509_22157, RNA1509_49584, RNA1509_54173, RNA1509_5867, RNA1509_58955} {RNA1509_1880, RNA1509_19827, RNA1509_22157, RNA1509_49584, RNA1509_54173, RNA1509_5867, RNA1509_58955, RNA815_480.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA