Data search
Results for MligTC455_19153
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_19153 | 840 | 17.50 | Mlig455_002974 | Neo: Int S/G2/M Age: - Region-specific R5: 2.424 Region-enriched R5: 1.824/0.00000 |
AGAP3 | Mlig455_002974 {REF} {Length: 5943} {Pfam: Putative GTPase activating protein for Arf [PF01412.20, score=127.6]; PH domain [PF00169.31, score=32.0]; Ankyrin repeats (many copies) [PF13637.8, score=26.2]; Ankyrin repeats (3 copies) [PF12796.9, score=20.5]} {Human: ENSG00000133612, AGAP3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=350, Expect=8e-109]; ENSG00000157985, AGAP1, ArfGAP with GTPase domain, ankyrin repeat and PH domain 1, [Score=345, Expect=6e-105]} {Mouse: ENSMUSG00000055013, Agap1, ArfGAP with GTPase domain, ankyrin repeat and PH domain 1, [Score=347, Expect=6e-107]; ENSMUSG00000023353, Agap3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=343, Expect=4e-108]} {Dmel: FBgn0028509, CenG1A, Centaurin gamma 1A, [Score=234, Expect=8e-65]} {Celegans: WBGene00000566, cnt-2, Arf-GAP with ANK repeat and PH domain-containing protein cnt-2, [Score=265, Expect=7e-77]} {Smed: dd_Smed_v6_4301_0_2, dd_Smed_v6_4301_0_2, [Score=415, Expect=5e-129]} {RNA1509_22773, RNA1509_44351} {RNA1310_2790, RNA1509_44351} {RNA1509_44351, RNA815_7323} |
Cumulative graph for MligTC455_19153
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 0.141 | 4.434 | 0.88171 | 1.00000 | |
| RegionR2 | 0.522 | 4.434 | 0.31148 | 0.70233 | |
| RegionR3 | -0.872 | 4.434 | 0.05352 | 0.40521 | |
| RegionR4 | -0.878 | 4.434 | 0.05797 | 0.21294 | |
| RegionR5 | 1.824 | 4.434 | 0.00000 | 0.00000 | Specific for R5: 2.424 |
| RegionR6 | 0.334 | 4.434 | 0.40270 | 0.97375 | |
| RegionR7 | 0.383 | 4.434 | 0.46853 | 1.00000 | |
| RegionR8 | -1.455 | 4.434 | 0.11180 | 0.61987 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -7.211 | 4.434 | 0.06622 | 0.74387 | |
| RegenerationR2 | 0.597 | 4.434 | 0.15456 | 0.59030 | |
| RegenerationR3 | 1.392 | 4.434 | 0.00442 | 0.11999 | |
| RegenerationR4 | 0.375 | 4.434 | 0.41068 | 0.82088 | |
| RegenerationR5 | -0.067 | 4.434 | 0.86607 | 1.00000 | |
| RegenerationR6 | 0.918 | 4.434 | 0.03906 | 0.24709 | |
| RegenerationBL | 1.534 | 4.434 | 0.00455 | 0.06182 | |
| RegenerationTP | 0.495 | 4.434 | 0.49515 | 0.89797 |
Genes with expression patterns similar to MligTC455_19153
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_19153 | 840 | 17.5 | Mlig455_002974 | Neo: Int S/G2/M Age: - Region-specific R5: 2.424 Region-enriched R5: 1.824/0.00000 |
AGAP3 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_002974 {REF} {Length: 5943} {Pfam: Putative GTPase activating protein for Arf [PF01412.20, score=127.6]; PH domain [PF00169.31, score=32.0]; Ankyrin repeats (many copies) [PF13637.8, score=26.2]; Ankyrin repeats (3 copies) [PF12796.9, score=20.5]} {Human: ENSG00000133612, AGAP3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=350, Expect=8e-109]; ENSG00000157985, AGAP1, ArfGAP with GTPase domain, ankyrin repeat and PH domain 1, [Score=345, Expect=6e-105]} {Mouse: ENSMUSG00000055013, Agap1, ArfGAP with GTPase domain, ankyrin repeat and PH domain 1, [Score=347, Expect=6e-107]; ENSMUSG00000023353, Agap3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=343, Expect=4e-108]} {Dmel: FBgn0028509, CenG1A, Centaurin gamma 1A, [Score=234, Expect=8e-65]} {Celegans: WBGene00000566, cnt-2, Arf-GAP with ANK repeat and PH domain-containing protein cnt-2, [Score=265, Expect=7e-77]} {Smed: dd_Smed_v6_4301_0_2, dd_Smed_v6_4301_0_2, [Score=415, Expect=5e-129]} {RNA1509_22773, RNA1509_44351} {RNA1310_2790, RNA1509_44351} {RNA1509_44351, RNA815_7323} |
| 2. | MligTC455_16025 | 376 | 7.83 | Mlig455_000880 | Neo: - Age: - Region-enriched R5: 1.244/0.00707 |
IDE | 2.477 | - | - | - | 0.958 | 0.801 | 0.718 | Mlig455_000880 {REF} {Length: 3596} {Pfam: Peptidase M16 inactive domain [PF05193.23, score=37.0]; Middle or third domain of peptidase_M16 [PF16187.7, score=33.1]} {Human: ENSG00000119912, IDE, insulin degrading enzyme, [Score=182, Expect=2e-52]} {Mouse: ENSMUSG00000056999, Ide, insulin degrading enzyme, [Score=181, Expect=4e-50]; ENSMUSG00000111624, Ide, insulin degrading enzyme, [Score=181, Expect=4e-50]} {Dmel: FBgn0001247, Ide, Insulin degrading metalloproteinase, [Score=199, Expect=9e-57]} {Celegans: WBGene00018426, F44E7.4, [Score=147, Expect=1e-38]} {Smed: dd_Smed_v6_9500_1_1, dd_Smed_v6_9500_1_1, [Score=167, Expect=8e-46]} {RNA1509_34800, RNA1509_38131} {RNA1310_856.2, RNA1509_34800, RNA1509_38131} {RNA1509_34800, RNA1509_38131, RNA815_1063} |
| 3. | MligTC455_41696 | 1014 | 21.13 | Mlig455_009697, Mlig455_063047 | Neo: - Age: Down-Down-Up Region-enriched R5: 1.062/0.00152 |
SDR39U1 | 2.418 | - | 0.750 | - | - | 0.956 | 0.712 | Mlig455_009697 {REF} {Length: 1979} {TRANSSPLICED} {Pfam: Ham1 family [PF01725.18, score=149.4]; Domain of unknown function (DUF1731) [PF08338.13, score=51.7]; NAD dependent epimerase/dehydratase family [PF01370.23, score=28.6]} {Human: ENSG00000100445, SDR39U1, short chain dehydrogenase/reductase family 39U member 1, [RH, Score=189, Expect=1e-55]} {Mouse: ENSMUSG00000022223, Sdr39u1, short chain dehydrogenase/reductase family 39U, member 1, [RH, Score=191, Expect=1e-56]} {Dmel: FBgn0031663, CG8891, [Score=167, Expect=8e-49]} {Celegans: WBGene00001823, hap-1, Inosine triphosphate pyrophosphatase, [Score=195, Expect=1e-59]} {Smed: dd_Smed_v6_3863_0_1, dd_Smed_v6_3863_0_1, [RH, Score=196, Expect=1e-58]} {RNA1509_16167} {RNA1310_22953.1} {RNA815_33247.1} Mlig455_063047 {REF} {Length: 1418} {TRANSSPLICED} {Pfam: Ham1 family [PF01725.18, score=149.4]; Domain of unknown function (DUF1731) [PF08338.13, score=51.7]; NAD dependent epimerase/dehydratase family [PF01370.23, score=28.6]} {Human: ENSG00000100445, SDR39U1, short chain dehydrogenase/reductase family 39U member 1, [RH, Score=189, Expect=1e-55]} {Mouse: ENSMUSG00000022223, Sdr39u1, short chain dehydrogenase/reductase family 39U, member 1, [RH, Score=191, Expect=1e-56]} {Dmel: FBgn0031663, CG8891, [Score=167, Expect=8e-49]} {Celegans: WBGene00001823, hap-1, Inosine triphosphate pyrophosphatase, [Score=195, Expect=1e-59]} {Smed: dd_Smed_v6_3863_0_1, dd_Smed_v6_3863_0_1, [RH, Score=196, Expect=1e-58]} {RNA1310_22953.2} {RNA815_33247.2} |
| 4. | MligTC455_15667 | 441 | 9.18 | Mlig455_059393 | Neo: Irradiation Age: - |
FICD | 2.386 | - | - | - | 0.953 | 0.722 | 0.711 | Mlig455_059393 {REF} {Length: 3812} {Pfam: Evolutionarily conserved signalling intermediate in Toll pathway [PF06239.13, score=180.7]; Fic/DOC family [PF02661.20, score=83.3]; C-terminal domain of the ECSIT protein [PF14784.8, score=42.0]; Tetratricopeptide repeat [PF07719.19, score=21.7]; Tetratricopeptide repeat [PF13432.8, score=20.3]; Tetratricopeptide repeat [PF13428.8, score=20.0]} {Human: ENSG00000198855, FICD, FIC domain containing, [RH, Score=351, Expect=6e-110]} {Mouse: ENSMUSG00000053334, Ficd, FIC domain containing, [RH, Score=341, Expect=2e-106]} {Dmel: FBgn0263278, Fic, Fic domain-containing protein, [RH, Score=333, Expect=6e-103]} {Celegans: WBGene00014004, fic-1, Adenosine monophosphate-protein transferase FICD homolog, [RH, Score=304, Expect=3e-92]} {Smed: dd_Smed_v6_7501_0_1, dd_Smed_v6_7501_0_1, [RH, Score=416, Expect=3e-135]} {RNA1509_26908} {RNA1310_16000} {RNA815_13748} |
| 5. | MligTC455_53645 | 230 | 4.79 | Mlig455_056853 | Neo: Irradiation Age: Up-Down-Up Region-enriched R5: 2.305/0.00036 Regeneration-upregulated R4: 3.325 Regeneration-enriched R4: 3.325 |
MYO9A | 1.736 | - | - | - | 0.776 | - | 0.960 | Mlig455_056853 {REF} {Length: 3207} {Pfam: RhoGAP domain [PF00620.29, score=92.6]} {Human: ENSG00000066933, MYO9A, myosin IXA, [Score=73.9, Expect=8e-13]} {Mouse: ENSMUSG00000039585, Myo9a, myosin IXa, [Score=72.8, Expect=2e-12]} {Dmel: FBgn0036257, RhoGAP68F, Rho GTPase activating protein at 68F, [Score=67.8, Expect=2e-11]} {Celegans: WBGene00001559, gei-1, GEX Interacting protein, [Score=73.2, Expect=6e-13]} {Smed: dd_Smed_v6_6129_0_1, dd_Smed_v6_6129_0_1, [Score=62.8, Expect=6e-10]} {RNA1310_25774} {RNA815_32981} |
| 6. | MligTC455_22188 | 341 | 7.1 | Mlig455_001534 | Neo: Irradiation Age: - Region-enriched R5: 3.153/0.00000 |
1.727 | - | - | 0.777 | - | - | 0.950 | Mlig455_001534 {REF} {Length: 2388} {Pfam: GRAM domain [PF02893.22, score=32.5]; SDA1 [PF05285.14, score=19.9]; MRVI1 protein [PF05781.14, score=17.5]} {Dmel: FBgn0085423, CG34394, [Score=50.1, Expect=2e-06]} {RNA1509_39913, RNA1509_48384, RNA1509_54746} {RNA1310_26092, RNA1509_39913, RNA1509_48384, RNA1509_54746} {RNA1509_39913, RNA1509_48384, RNA1509_54746, RNA815_28931} | |
| 7. | MligTC455_31208 | 426 | 8.88 | Mlig455_052922 | Neo: - Age: Up-Down-Down |
1.714 | - | - | - | 0.738 | 0.976 | - | Mlig455_052922 {REF} {Length: 4594} {RNA1509_8114} {RNA1310_6709.1} {RNA815_13320.1} | |
| 8. | MligTC455_06593 | 2638 | 54.96 | Mlig455_015772, Mlig455_049498 | Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.475 Region-enriched R2: 1.057/0.03873 Regeneration-upregulated R6: 1.343 Regeneration-enriched R6: 1.343 |
WDR53 | 1.7 | - | - | - | 0.960 | - | 0.740 | Mlig455_015772 {REF} {Length: 2502} {Pfam: WD domain, G-beta repeat [PF00400.34, score=60.4]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=39.0]} {Human: ENSG00000185798, WDR53, WD repeat domain 53, [RH, Score=138, Expect=2e-37]} {Mouse: ENSMUSG00000022787, Wdr53, WD repeat domain 53, [RH, Score=129, Expect=3e-34]} {Dmel: FBgn0036354, Poc1, Proteome of centrioles 1, [Score=55.1, Expect=3e-08]} {Celegans: WBGene00270321, Y41C4A.32, [Score=49.7, Expect=9e-07]} {Smed: dd_Smed_v6_4118_0_1, dd_Smed_v6_4118_0_1, [RH, Score=101, Expect=2e-24]} {RNA1509_3753} {RNA1310_18719} {RNA815_4300} Mlig455_049498 {REF} {Length: 2502} {Pfam: WD domain, G-beta repeat [PF00400.34, score=60.4]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=39.0]} {Human: ENSG00000185798, WDR53, WD repeat domain 53, [RH, Score=138, Expect=2e-37]} {Mouse: ENSMUSG00000022787, Wdr53, WD repeat domain 53, [RH, Score=129, Expect=3e-34]} {Dmel: FBgn0036354, Poc1, Proteome of centrioles 1, [Score=55.1, Expect=3e-08]} {Celegans: WBGene00270321, Y41C4A.32, [Score=49.7, Expect=9e-07]} {Smed: dd_Smed_v6_4118_0_1, dd_Smed_v6_4118_0_1, [RH, Score=101, Expect=2e-24]} {RNA1509_18081, RNA1509_25733, RNA1509_26103, RNA1509_27935, RNA1509_3753, RNA1509_59855} {RNA1310_18719, RNA1509_18081, RNA1509_25733, RNA1509_26103, RNA1509_27935, RNA1509_3753, RNA1509_59855} {RNA1509_18081, RNA1509_25733, RNA1509_26103, RNA1509_27935, RNA1509_3753, RNA1509_59855, RNA815_4300} |
| 9. | MligTC455_35054 | 723 | 15.06 | Mlig455_030811 | Neo: - Age: Down-Down-Down Region-enriched R5: 2.153/0.00000 |
1.657 | - | - | 0.704 | - | - | 0.953 | Mlig455_030811 {REF} {Length: 2772} {RNA1509_15774, RNA1509_41434, RNA1509_44133} {RNA1310_40148, RNA1509_41434, RNA1509_44133} {RNA1509_41434, RNA1509_44133, RNA815_10781} | |
| 10. | MligTC455_48207 | 642 | 13.38 | Mlig455_005205 | Neo: - Age: logFC(26M/2M)=0.479 Region-enriched R5: 1.974/0.00560 |
MAP3K15 | 0.953 | - | 0.953 | - | - | - | - | Mlig455_005205 {REF} {Length: 4073} {TRANSSPLICED} {Pfam: MAP3K TRAFs-binding domain [PF13281.8, score=321.2]; Protein kinase domain [PF00069.27, score=200.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=150.1]} {Human: ENSG00000180815, MAP3K15, mitogen-activated protein kinase kinase kinase 15, [Score=566, Expect=0.0]} {Mouse: ENSMUSG00000031303, Map3k15, mitogen-activated protein kinase kinase kinase 15, [Score=566, Expect=0.0]} {Dmel: FBgn0014006, Ask1, Apoptotic signal-regulating kinase 1, [Score=583, Expect=0.0]} {Celegans: WBGene00003822, nsy-1, Mitogen-activated protein kinase kinase kinase nsy-1, [Score=526, Expect=4e-165]} {Smed: dd_Smed_v6_4849_0_1, dd_Smed_v6_4849_0_1, [Score=622, Expect=0.0]} {RNA1509_24869} {RNA1310_2899} {RNA815_1492.1} |
| 11. | MligTC455_49421 | 896 | 18.66 | Mlig455_019201 | Neo: - Age: - |
0.951 | - | - | - | 0.951 | - | - | Mlig455_019201 {REF} {Length: 2237} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF00047.27, score=19.1]} {RNA1509_11148, RNA1509_15635} {RNA1310_32182, RNA1509_11148, RNA1509_15635} {RNA1509_11148, RNA1509_15635, RNA815_17684} |
Berezikov Lab - 2020-2021 © ERIBA