M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_19548

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_19548 5098 106.21 Mlig455_029183, Mlig455_030261

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.308

 APRT

Mlig455_029183 {REF} {Length: 1038} {TRANSSPLICED} {Pfam: Phosphoribosyl transferase domain [PF00156.29, score=50.6]} {Human: ENSG00000198931, APRT, adenine phosphoribosyltransferase, [RH, Score=144, Expect=1e-43]} {Mouse: ENSMUSG00000006589, Aprt, adenine phosphoribosyl transferase, [RH, Score=145, Expect=5e-44]} {Dmel: FBgn0000109, Aprt, Adenine phosphoribosyltransferase, [RH, Score=157, Expect=7e-49]} {Celegans: WBGene00020557, T19B4.3, Adenine phosphoribosyltransferase, [RH, Score=150, Expect=2e-46]} {Smed: dd_Smed_v6_7147_0_1, dd_Smed_v6_7147_0_1, [RH, Score=148, Expect=7e-46]} {RNA1509_44145} {RNA1310_3416.2} {RNA815_939.1}

Mlig455_030261 {REF} {Length: 1038} {TRANSSPLICED} {Pfam: Phosphoribosyl transferase domain [PF00156.29, score=50.6]} {Human: ENSG00000198931, APRT, adenine phosphoribosyltransferase, [RH, Score=144, Expect=1e-43]} {Mouse: ENSMUSG00000006589, Aprt, adenine phosphoribosyl transferase, [RH, Score=145, Expect=5e-44]} {Dmel: FBgn0000109, Aprt, Adenine phosphoribosyltransferase, [RH, Score=157, Expect=7e-49]} {Celegans: WBGene00020557, T19B4.3, Adenine phosphoribosyltransferase, [RH, Score=150, Expect=2e-46]} {Smed: dd_Smed_v6_7147_0_1, dd_Smed_v6_7147_0_1, [RH, Score=148, Expect=7e-46]} {RNA1509_44145, RNA1509_5734} {RNA1310_3416.2, RNA1509_44145, RNA1509_5734} {RNA1509_44145, RNA1509_5734, RNA815_939.1}

Cumulative graph for MligTC455_19548

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.655 6.792 0.21739 0.85938
RegionR2 -0.437 6.792 0.16718 0.51183
RegionR3 0.171 6.792 0.50873 0.99792
RegionR4 0.763 6.792 0.00956 0.05904
RegionR5 0.794 6.792 0.00101 0.01029
RegionR6 0.557 6.792 0.03003 0.31987
RegionR7 -0.397 6.792 0.19570 0.80206
RegionR8 -0.796 6.792 0.03183 0.34905

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.002 6.792 0.10603 0.82740
RegenerationR2 -0.045 6.792 0.88664 1.00000
RegenerationR3 0.032 6.792 0.92306 1.00000
RegenerationR4 0.315 6.792 0.34136 0.77275
RegenerationR5 0.045 6.792 0.88791 1.00000
RegenerationR6 0.276 6.792 0.38892 0.72901
RegenerationBL 0.403 6.792 0.18972 0.52308
RegenerationTP 0.717 6.792 0.03705 0.32037


Genes with expression patterns similar to MligTC455_19548

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_19548 5098 106.21 Mlig455_029183, Mlig455_030261

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.308

 APRT 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_029183 {REF} {Length: 1038} {TRANSSPLICED} {Pfam: Phosphoribosyl transferase domain [PF00156.29, score=50.6]} {Human: ENSG00000198931, APRT, adenine phosphoribosyltransferase, [RH, Score=144, Expect=1e-43]} {Mouse: ENSMUSG00000006589, Aprt, adenine phosphoribosyl transferase, [RH, Score=145, Expect=5e-44]} {Dmel: FBgn0000109, Aprt, Adenine phosphoribosyltransferase, [RH, Score=157, Expect=7e-49]} {Celegans: WBGene00020557, T19B4.3, Adenine phosphoribosyltransferase, [RH, Score=150, Expect=2e-46]} {Smed: dd_Smed_v6_7147_0_1, dd_Smed_v6_7147_0_1, [RH, Score=148, Expect=7e-46]} {RNA1509_44145} {RNA1310_3416.2} {RNA815_939.1}

Mlig455_030261 {REF} {Length: 1038} {TRANSSPLICED} {Pfam: Phosphoribosyl transferase domain [PF00156.29, score=50.6]} {Human: ENSG00000198931, APRT, adenine phosphoribosyltransferase, [RH, Score=144, Expect=1e-43]} {Mouse: ENSMUSG00000006589, Aprt, adenine phosphoribosyl transferase, [RH, Score=145, Expect=5e-44]} {Dmel: FBgn0000109, Aprt, Adenine phosphoribosyltransferase, [RH, Score=157, Expect=7e-49]} {Celegans: WBGene00020557, T19B4.3, Adenine phosphoribosyltransferase, [RH, Score=150, Expect=2e-46]} {Smed: dd_Smed_v6_7147_0_1, dd_Smed_v6_7147_0_1, [RH, Score=148, Expect=7e-46]} {RNA1509_44145, RNA1509_5734} {RNA1310_3416.2, RNA1509_44145, RNA1509_5734} {RNA1509_44145, RNA1509_5734, RNA815_939.1}
2. MligTC455_36340 3765 78.44 Mlig455_040001

Neo: Neoblast

Age: Down-Up-Up, logFC(26M/2M)=0.549

Region-enriched R5: 1.299/0.00000

 AK2 0.967 - - - 0.967 - - Mlig455_040001 {REF} {Length: 1518} {TRANSSPLICED} {Pfam: Adenylate kinase [PF00406.24, score=172.3]; AAA domain [PF13207.8, score=76.2]; Adenylate kinase, active site lid [PF05191.16, score=51.3]; AAA domain [PF13671.8, score=26.4]} {Human: ENSG00000004455, AK2, adenylate kinase 2, [RH, Score=253, Expect=5e-85]} {Mouse: ENSMUSG00000028792, Ak2, adenylate kinase 2, [RH, Score=254, Expect=7e-86]} {Dmel: FBgn0283494, Adk2, Adenylate kinase 2, [RH, Score=256, Expect=1e-86]} {Celegans: WBGene00002879, let-754, Adenylate kinase, [RH, Score=249, Expect=9e-84]} {Smed: dd_Smed_v6_3290_0_1, dd_Smed_v6_3290_0_1, [RH, Score=251, Expect=1e-84]} {RNA1509_13110, RNA1509_20724, RNA1509_41891, RNA1509_8548} {RNA1310_22761, RNA1509_13110, RNA1509_20724, RNA1509_41891, RNA1509_8548} {RNA1509_13110, RNA1509_20724, RNA1509_41891, RNA1509_8548, RNA815_3818.1}
3. MligTC455_22829 22696 472.84 Mlig455_017875

Neo: Int S/G2/M

Age: -

 RPL9 0.951 - - - - 0.951 - Mlig455_017875 {REF} {Length: 710} {TRANSSPLICED} {Pfam: Ribosomal protein L6 [PF00347.25, score=114.5]} {Human: ENSG00000163682, RPL9, ribosomal protein L9, [RH, Score=217, Expect=4e-72]} {Mouse: ENSMUSG00000047215, Rpl9, ribosomal protein L9, [RH, Score=218, Expect=2e-72]; ENSMUSG00000062456, Rpl9-ps6, ribosomal protein L9, pseudogene 6, [RH, Score=216, Expect=7e-72]} {Dmel: FBgn0015756, RpL9, Ribosomal protein L9, [RH, Score=231, Expect=9e-78]} {Celegans: WBGene00004420, rpl-9, 60S ribosomal protein L9, [RH, Score=216, Expect=3e-72]} {Smed: dd_Smed_v6_150_0_1, dd_Smed_v6_150_0_1, [RH, Score=235, Expect=1e-79]} {RNA1509_57874} {RNA1310_52091.1, RNA1509_57874} {RNA1509_57874, RNA815_22948}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA