TomoSeq data search

Data search

Results for MligTC455_19559

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_19559

356

7.43

Mlig455_064160

Neo: -

Age: -

LARS

Mlig455_064160 {REF} {Length: 4264} {Pfam: tRNA synthetases class I (I, L, M and V) [PF00133.24, score=126.5]; tRNA synthetases class I (M) [PF09334.13, score=59.9]; Anticodon-binding domain of tRNA ligase [PF08264.15, score=36.1]; tRNA synthetases class I (C) catalytic domain [PF01406.21, score=30.8]} {Human: ENSG00000133706, LARS, leucyl-tRNA synthetase, [RH, Score=1210, Expect=0.0]} {Mouse: ENSMUSG00000024493, Lars, leucyl-tRNA synthetase, [RH, Score=1225, Expect=0.0]} {Dmel: FBgn0284253, LeuRS, Leucyl-tRNA synthetase, [RH, Score=1149, Expect=0.0]} {Celegans: WBGene00003073, lars-1, Leucine--tRNA ligase, [RH, Score=1091, Expect=0.0]} {Smed: dd_Smed_v6_2849_0_1, dd_Smed_v6_2849_0_1, [RH, Score=1118, Expect=0.0]} {RNA1509_22279} {RNA1310_108.2} {RNA815_883}

Cumulative graph for MligTC455_19559

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.827	3.47	1.00000	1.00000
RegionR2	2.831	3.47	0.09050	0.36883
RegionR3	2.204	3.47	0.10157	0.55831
RegionR4	0.963	3.47	0.47326	0.80101
RegionR5	1.869	3.47	0.13166	0.36922
RegionR6	1.163	3.47	0.38480	0.96250
RegionR7	-0.394	3.47	0.85711	1.00000
RegionR8	-3.808	3.47	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	4.848	3.47	0.41909	1.00000
RegenerationR2	-0.591	3.47	0.57980	0.90693
RegenerationR3	-0.053	3.47	0.94691	1.00000
RegenerationR4	0.214	3.47	0.88208	1.00000
RegenerationR5	0.072	3.47	0.95705	1.00000
RegenerationR6	1.043	3.47	0.39244	0.73160
RegenerationBL	1.599	3.47	0.37837	0.74711
RegenerationTP	3.44	3.47	0.10750	0.50656

Genes with expression patterns similar to MligTC455_19559

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_19559	356	7.43	Mlig455_064160	Neo: - Age: -	LARS	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_064160 {REF} {Length: 4264} {Pfam: tRNA synthetases class I (I, L, M and V) [PF00133.24, score=126.5]; tRNA synthetases class I (M) [PF09334.13, score=59.9]; Anticodon-binding domain of tRNA ligase [PF08264.15, score=36.1]; tRNA synthetases class I (C) catalytic domain [PF01406.21, score=30.8]} {Human: ENSG00000133706, LARS, leucyl-tRNA synthetase, [RH, Score=1210, Expect=0.0]} {Mouse: ENSMUSG00000024493, Lars, leucyl-tRNA synthetase, [RH, Score=1225, Expect=0.0]} {Dmel: FBgn0284253, LeuRS, Leucyl-tRNA synthetase, [RH, Score=1149, Expect=0.0]} {Celegans: WBGene00003073, lars-1, Leucine--tRNA ligase, [RH, Score=1091, Expect=0.0]} {Smed: dd_Smed_v6_2849_0_1, dd_Smed_v6_2849_0_1, [RH, Score=1118, Expect=0.0]} {RNA1509_22279} {RNA1310_108.2} {RNA815_883}
2.	MligTC455_37842	80	1.67	Mlig455_005522	Neo: - Age: Up-Up-Up, logFC(26M/2M)=0.504	PANK3	0.971	-	-	-	0.971	-	-	Mlig455_005522 {REF} {Length: 1551} {Pfam: Fumble [PF03630.16, score=107.4]} {Human: ENSG00000120137, PANK3, pantothenate kinase 3, [Score=62.8, Expect=3e-10]} {Mouse: ENSMUSG00000018846, Pank3, pantothenate kinase 3, [Score=62.4, Expect=2e-10]; ENSMUSG00000033610, Pank1, pantothenate kinase 1, [Score=62.0, Expect=4e-10]} {Celegans: WBGene00004068, pnk-1, PaNtothenate Kinase, [Score=65.9, Expect=1e-11]} {Smed: dd_Smed_v6_2075_0_1, dd_Smed_v6_2075_0_1, [Score=210, Expect=7e-65]} {RNA1509_37071} {RNA1310_16369} {RNA815_10582}
3.	MligTC455_50322	253	5.26	Mlig455_007808, Mlig455_021090	Neo: - Age: -	KDM4A	0.967	-	-	-	-	-	0.967	Mlig455_007808 {REF} {Length: 2597} {TRANSSPLICED} {Pfam: JmjC domain, hydroxylase [PF02373.24, score=142.3]; jmjN domain [PF02375.19, score=32.4]} {Human: ENSG00000066135, KDM4A, lysine demethylase 4A, [Score=371, Expect=4e-117]; ENSG00000107077, KDM4C, lysine demethylase 4C, [Score=367, Expect=1e-115]; ENSG00000127663, KDM4B, lysine demethylase 4B, [Score=353, Expect=4e-110]} {Mouse: ENSMUSG00000033326, Kdm4a, lysine (K)-specific demethylase 4A, [Score=373, Expect=3e-118]; ENSMUSG00000028397, Kdm4c, lysine (K)-specific demethylase 4C, [Score=365, Expect=2e-115]} {Dmel: FBgn0053182, Kdm4B, Lysine (K)-specific demethylase 4B, [Score=361, Expect=9e-119]} {Celegans: WBGene00012982, jmjd-2, Lysine-specific demethylase 4, [Score=309, Expect=2e-95]} {Smed: dd_Smed_v6_10489_0_2, dd_Smed_v6_10489_0_2, [Score=331, Expect=3e-109]} {RNA1509_38626} {RNA1310_14809.1} {RNA815_23117} Mlig455_021090 {REF} {Length: 2449} {TRANSSPLICED} {Pfam: JmjC domain, hydroxylase [PF02373.24, score=142.4]; jmjN domain [PF02375.19, score=32.4]} {Human: ENSG00000066135, KDM4A, lysine demethylase 4A, [Score=369, Expect=7e-117]; ENSG00000107077, KDM4C, lysine demethylase 4C, [Score=368, Expect=3e-116]; ENSG00000127663, KDM4B, lysine demethylase 4B, [Score=354, Expect=7e-111]} {Mouse: ENSMUSG00000033326, Kdm4a, lysine (K)-specific demethylase 4A, [Score=372, Expect=4e-118]; ENSMUSG00000028397, Kdm4c, lysine (K)-specific demethylase 4C, [Score=367, Expect=5e-116]} {Dmel: FBgn0053182, Kdm4B, Lysine (K)-specific demethylase 4B, [Score=361, Expect=1e-118]} {Celegans: WBGene00012982, jmjd-2, Lysine-specific demethylase 4, [Score=308, Expect=2e-95]} {Smed: dd_Smed_v6_10489_0_2, dd_Smed_v6_10489_0_2, [Score=330, Expect=8e-109]} {RNA1509_38626} {RNA1310_14809.2, RNA1509_38626} {RNA1509_38626, RNA815_23117}
4.	MligTC455_26643	312	6.5	Mlig455_028106	Neo: - Age: Down-Up-Up Region-enriched R5: 2.240/0.02123	TUBGCP2	0.965	-	-	-	-	-	0.965	Mlig455_028106 {REF} {Length: 2771} {TRANSSPLICED} {Pfam: Gamma tubulin complex component C-terminal [PF04130.15, score=239.2]; Gamma tubulin complex component N-terminal [PF17681.3, score=207.5]} {Human: ENSG00000130640, TUBGCP2, tubulin gamma complex associated protein 2, [RH, Score=574, Expect=0.0]} {Mouse: ENSMUSG00000025474, Tubgcp2, tubulin, gamma complex associated protein 2, [RH, Score=565, Expect=0.0]} {Dmel: FBgn0026430, Grip84, Gamma-tubulin ring protein 84, [RH, Score=346, Expect=1e-105]} {Smed: dd_Smed_v6_7469_0_1, dd_Smed_v6_7469_0_1, [RH, Score=365, Expect=6e-114]} {RNA1509_10994} {RNA1310_6326} {RNA815_15698.1}
5.	MligTC455_33380	1883	39.23	Mlig455_017204, Mlig455_017219	Neo: - Age: - Region-enriched R4: 1.947/0.00000 Regeneration-upregulated BL: 1.525 Regeneration-enriched BL: 1.525	PDSS1	0.964	-	-	-	-	-	0.964	Mlig455_017204 {REF} {Length: 1739} {TRANSSPLICED} {Pfam: Polyprenyl synthetase [PF00348.19, score=196.4]} {Human: ENSG00000148459, PDSS1, decaprenyl diphosphate synthase subunit 1, [RH, Score=228, Expect=8e-71]} {Mouse: ENSMUSG00000026784, Pdss1, prenyl (solanesyl) diphosphate synthase, subunit 1, [RH, Score=225, Expect=4e-70]} {Dmel: FBgn0051005, qless, [RH, Score=235, Expect=9e-74]} {Celegans: WBGene00000761, coq-1, COenzyme Q (Ubiquinone) biosynthesis, [RH, Score=208, Expect=6e-64]} {Smed: dd_Smed_v6_12221_0_1, dd_Smed_v6_12221_0_1, [RH, Score=253, Expect=1e-81]} {RNA1509_12834, RNA1509_44863, RNA1509_53028} {RNA1310_15422, RNA1509_12834, RNA1509_44863, RNA1509_53028} {RNA1509_12834, RNA1509_44863, RNA1509_53028, RNA815_6758.1} Mlig455_017219 {REF} {Length: 1741} {TRANSSPLICED} {Pfam: Polyprenyl synthetase [PF00348.19, score=196.4]} {Human: ENSG00000148459, PDSS1, decaprenyl diphosphate synthase subunit 1, [RH, Score=228, Expect=8e-71]} {Mouse: ENSMUSG00000026784, Pdss1, prenyl (solanesyl) diphosphate synthase, subunit 1, [RH, Score=225, Expect=4e-70]} {Dmel: FBgn0051005, qless, [RH, Score=235, Expect=9e-74]} {Celegans: WBGene00000761, coq-1, COenzyme Q (Ubiquinone) biosynthesis, [RH, Score=208, Expect=6e-64]} {Smed: dd_Smed_v6_12221_0_1, dd_Smed_v6_12221_0_1, [RH, Score=253, Expect=1e-81]} {RNA1509_18613} {RNA1310_15422, RNA1509_18613} {RNA1509_18613, RNA815_6758.1}
6.	MligTC455_45219	34	0.72	Mlig455_035493	Neo: - Age: -		0.956	-	-	-	0.956	-	-	Mlig455_035493 {REF} {Length: 1813} {RNA1509_47707} {RNA1310_25873} {RNA815_11232.1}

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