TomoSeq data search

Data search

Results for MligTC455_19841

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_19841	14	0.28	Mlig455_039669	Neo: - Age: -	GRIK3	Mlig455_039669 {REF} {Length: 2919} {Pfam: Ligand-gated ion channel [PF00060.28, score=142.6]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=98.6]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=60.7]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=350, Expect=1e-105]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=348, Expect=9e-105]; ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=340, Expect=2e-101]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=333, Expect=3e-99]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=348, Expect=7e-105]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=346, Expect=2e-104]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=338, Expect=5e-101]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=336, Expect=1e-100]} {Dmel: FBgn0038837, CG3822, [Score=364, Expect=1e-111]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=326, Expect=3e-97]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=401, Expect=1e-124]} {RNA1509_45189} {RNA1310_13827.1} {RNA815_36301}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_19841

0.28

Mlig455_039669

Neo: -

Age: -

GRIK3

Mlig455_039669 {REF} {Length: 2919} {Pfam: Ligand-gated ion channel [PF00060.28, score=142.6]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=98.6]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=60.7]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=350, Expect=1e-105]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=348, Expect=9e-105]; ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=340, Expect=2e-101]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=333, Expect=3e-99]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=348, Expect=7e-105]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=346, Expect=2e-104]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=338, Expect=5e-101]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=336, Expect=1e-100]} {Dmel: FBgn0038837, CG3822, [Score=364, Expect=1e-111]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=326, Expect=3e-97]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=401, Expect=1e-124]} {RNA1509_45189} {RNA1310_13827.1} {RNA815_36301}

Cumulative graph for MligTC455_19841

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	5.063	0.676	0.99957	1.00000
RegionR2	-0.484	0.676	0.90200	1.00000
RegionR3	0.247	0.676	0.61981	1.00000
RegionR4	2.772	0.676	0.21351	0.49975
RegionR5	-0.166	0.676	0.69560	1.00000
RegionR6	0.49	0.676	0.74871	1.00000
RegionR7	-4.011	0.676	0.99958	1.00000
RegionR8	-3.911	0.676	0.99960	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-2.899	0.676	0.99998	1.00000
RegenerationR2	-1.836	0.676	0.40488	0.81726
RegenerationR3	-3.593	0.676	0.19547	0.63076
RegenerationR4	-2.438	0.676	0.37987	0.80087
RegenerationR5	-2.537	0.676	0.27661	0.70572
RegenerationR6	-2.562	0.676	0.59028	0.86372
RegenerationBL	1.611	0.676	0.99992	1.00000
RegenerationTP	-0.95	0.676	0.99997	1.00000

Genes with expression patterns similar to MligTC455_19841

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_19841	14	0.28	Mlig455_039669	Neo: - Age: -	GRIK3	2	1.000	1.000	-	-	-	-	Mlig455_039669 {REF} {Length: 2919} {Pfam: Ligand-gated ion channel [PF00060.28, score=142.6]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=98.6]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=60.7]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=350, Expect=1e-105]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=348, Expect=9e-105]; ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=340, Expect=2e-101]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=333, Expect=3e-99]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=348, Expect=7e-105]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=346, Expect=2e-104]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=338, Expect=5e-101]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=336, Expect=1e-100]} {Dmel: FBgn0038837, CG3822, [Score=364, Expect=1e-111]} {Celegans: WBGene00001615, glr-4, GLutamate Receptor family (AMPA), [Score=326, Expect=3e-97]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=401, Expect=1e-124]} {RNA1509_45189} {RNA1310_13827.1} {RNA815_36301}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts