M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_19968

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_19968 213 4.44 Mlig455_060850

Neo: -

Age: -

 DHX33 Mlig455_060850 {REF} {Length: 3770} {Pfam: Helicase associated domain (HA2) [PF04408.25, score=58.3]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=39.2]; Helicase conserved C-terminal domain [PF00271.33, score=38.4]; DEAD/DEAH box helicase [PF00270.31, score=21.5]} {Human: ENSG00000005100, DHX33, DEAH-box helicase 33, [Score=463, Expect=6e-153]} {Mouse: ENSMUSG00000040620, Dhx33, DEAH (Asp-Glu-Ala-His) box polypeptide 33, [Score=457, Expect=7e-151]} {Dmel: FBgn0032194, CG4901, [Score=439, Expect=5e-144]} {Celegans: WBGene00003392, mog-4, Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4, [Score=413, Expect=1e-130]} {Smed: dd_Smed_v6_13370_0_1, dd_Smed_v6_13370_0_1, [Score=392, Expect=3e-126]} {RNA1509_16843} {RNA1310_5246} {RNA815_3446}

Cumulative graph for MligTC455_19968

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.737 2.713 0.07618 0.60827
RegionR2 1.328 2.713 0.06871 0.31874
RegionR3 0.109 2.713 0.84978 1.00000
RegionR4 -0.868 2.713 0.11104 0.32978
RegionR5 0.9 2.713 0.04445 0.17211
RegionR6 0.537 2.713 0.35003 0.93485
RegionR7 0.714 2.713 0.34614 0.98317
RegionR8 0.018 2.713 0.98459 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.155 2.713 0.61712 1.00000
RegenerationR2 -0.467 2.713 0.43856 0.83943
RegenerationR3 1.288 2.713 0.02614 0.29132
RegenerationR4 0.923 2.713 0.08159 0.45183
RegenerationR5 0.058 2.713 0.88881 1.00000
RegenerationR6 0.915 2.713 0.11906 0.42426
RegenerationBL 0.81 2.713 0.31316 0.67913
RegenerationTP -0.124 2.713 0.89894 1.00000


Genes with expression patterns similar to MligTC455_19968

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_19968 213 4.44 Mlig455_060850

Neo: -

Age: -

 DHX33 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_060850 {REF} {Length: 3770} {Pfam: Helicase associated domain (HA2) [PF04408.25, score=58.3]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=39.2]; Helicase conserved C-terminal domain [PF00271.33, score=38.4]; DEAD/DEAH box helicase [PF00270.31, score=21.5]} {Human: ENSG00000005100, DHX33, DEAH-box helicase 33, [Score=463, Expect=6e-153]} {Mouse: ENSMUSG00000040620, Dhx33, DEAH (Asp-Glu-Ala-His) box polypeptide 33, [Score=457, Expect=7e-151]} {Dmel: FBgn0032194, CG4901, [Score=439, Expect=5e-144]} {Celegans: WBGene00003392, mog-4, Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4, [Score=413, Expect=1e-130]} {Smed: dd_Smed_v6_13370_0_1, dd_Smed_v6_13370_0_1, [Score=392, Expect=3e-126]} {RNA1509_16843} {RNA1310_5246} {RNA815_3446}
2. MligTC455_19967 468 9.74 Mlig455_060812

Neo: -

Age: -

 DHX33 4.347 0.973 0.952 0.711 0.801 - 0.910 Mlig455_060812 {REF} {Length: 4606} {Pfam: Helicase associated domain (HA2) [PF04408.25, score=58.3]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=39.8]; Helicase conserved C-terminal domain [PF00271.33, score=38.1]; DEAD/DEAH box helicase [PF00270.31, score=21.7]} {Human: ENSG00000005100, DHX33, DEAH-box helicase 33, [Score=466, Expect=7e-154]} {Mouse: ENSMUSG00000040620, Dhx33, DEAH (Asp-Glu-Ala-His) box polypeptide 33, [Score=461, Expect=4e-152]} {Dmel: FBgn0032194, CG4901, [Score=439, Expect=8e-144]} {Celegans: WBGene00003392, mog-4, Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4, [Score=414, Expect=7e-131]} {Smed: dd_Smed_v6_13370_0_1, dd_Smed_v6_13370_0_1, [Score=392, Expect=7e-126]} {RNA1509_16843} {RNA1310_5246, RNA1509_16843} {RNA1509_16843, RNA815_3446}
3. MligTC455_22530 471 9.81 Mlig455_047182

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.347

 RAD54L 1.797 - - - - 0.953 0.844 Mlig455_047182 {REF} {Length: 3233} {TRANSSPLICED} {Pfam: SNF2-related domain [PF00176.25, score=206.9]; Helicase conserved C-terminal domain [PF00271.33, score=52.5]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=49.2]; Rad54 N terminal [PF08658.12, score=30.4]; Type III restriction enzyme, res subunit [PF04851.17, score=29.5]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=22.6]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=18.5]} {Human: ENSG00000085999, RAD54L, RAD54 like, [RH, Score=933, Expect=0.0]} {Mouse: ENSMUSG00000028702, Rad54l, RAD54 like (S. cerevisiae), [RH, Score=934, Expect=0.0]} {Dmel: FBgn0002989, okr, okra, [RH, Score=797, Expect=0.0]} {Celegans: WBGene00004298, rad-54, [RH, Score=804, Expect=0.0]} {Smed: dd_Smed_v6_15532_0_1, dd_Smed_v6_15532_0_1, [RH, Score=950, Expect=0.0]} {RNA1509_21103} {RNA1310_7218, RNA1509_21103} {RNA1509_21103, RNA815_1852.1}
4. MligTC455_51563 139 2.9 Mlig455_004055

Neo: -

Age: -

 AUH 0.953 - - - - 0.953 - Mlig455_004055 {REF} {Length: 1051} {TRANSSPLICED} {Pfam: Enoyl-CoA hydratase/isomerase [PF00378.22, score=199.5]; Enoyl-CoA hydratase/isomerase [PF16113.7, score=114.5]} {Human: ENSG00000148090, AUH, AU RNA binding methylglutaconyl-CoA hydratase, [RH, Score=260, Expect=3e-85]; ENSG00000121310, ECHDC2, enoyl-CoA hydratase domain containing 2, [RH, Score=255, Expect=7e-84]} {Mouse: ENSMUSG00000028601, Echdc2, enoyl Coenzyme A hydratase domain containing 2, [RH, Score=259, Expect=1e-85]; ENSMUSG00000021460, Auh, AU RNA binding protein/enoyl-coenzyme A hydratase, [RH, Score=258, Expect=7e-85]} {Dmel: FBgn0033761, CG8778, [RH, Score=275, Expect=8e-92]} {Celegans: WBGene00001154, ech-5, Enoyl-CoA Hydratase, [RH, Score=232, Expect=3e-75]} {Smed: dd_Smed_v6_3553_0_1, dd_Smed_v6_3553_0_1, [RH, Score=291, Expect=2e-98]} {RNA1509_30724} {RNA1310_10747.1} {RNA815_15836}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA