TomoSeq data search

Data search

Results for MligTC455_19981

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_19981	1266	26.37	Mlig455_064493, Mlig455_066054	Neo: - Age: Down-Down-Up	RNF19A, RNF19B	Mlig455_064493 {REF} {Length: 2899} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=34.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.4]; zinc-RING finger domain [PF14634.8, score=20.9]; RING-type zinc-finger [PF13445.8, score=20.1]} {Human: ENSG00000116514, RNF19B, ring finger protein 19B, [Score=299, Expect=2e-92]; ENSG00000034677, RNF19A, ring finger protein 19A, RBR E3 ubiquitin protein ligase, [Score=298, Expect=7e-91]} {Mouse: ENSMUSG00000022280, Rnf19a, ring finger protein 19A, [Score=297, Expect=1e-90]; ENSMUSG00000028793, Rnf19b, ring finger protein 19B, [Score=296, Expect=3e-91]} {Dmel: FBgn0025186, ari-2, ariadne 2, [Score=64.7, Expect=1e-10]} {Celegans: WBGene00015926, C17H11.6, [Score=289, Expect=1e-88]} {Smed: dd_Smed_v6_4771_0_1, dd_Smed_v6_4771_0_1, [Score=208, Expect=5e-59]} {RNA1509_14975} {RNA1310_7810.1} {RNA815_8054} Mlig455_066054 {REF} {Length: 4302} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=76.1]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.4]; zinc-RING finger domain [PF14634.8, score=20.9]; RING-type zinc-finger [PF13445.8, score=20.0]} {Human: ENSG00000034677, RNF19A, ring finger protein 19A, RBR E3 ubiquitin protein ligase, [Score=399, Expect=3e-129]; ENSG00000116514, RNF19B, ring finger protein 19B, [Score=391, Expect=4e-127]} {Mouse: ENSMUSG00000022280, Rnf19a, ring finger protein 19A, [Score=398, Expect=7e-129]; ENSMUSG00000028793, Rnf19b, ring finger protein 19B, [Score=388, Expect=3e-126]} {Dmel: FBgn0025186, ari-2, ariadne 2, [Score=102, Expect=1e-22]} {Celegans: WBGene00015926, C17H11.6, [Score=377, Expect=9e-122]} {Smed: dd_Smed_v6_4771_0_1, dd_Smed_v6_4771_0_1, [Score=207, Expect=2e-58]} {RNA1509_14975} {RNA1310_7810.1} {RNA815_8054}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_19981

1266

26.37

Mlig455_064493, Mlig455_066054

Neo: -

Age: Down-Down-Up

RNF19A, RNF19B

Mlig455_064493 {REF} {Length: 2899} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=34.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.4]; zinc-RING finger domain [PF14634.8, score=20.9]; RING-type zinc-finger [PF13445.8, score=20.1]} {Human: ENSG00000116514, RNF19B, ring finger protein 19B, [Score=299, Expect=2e-92]; ENSG00000034677, RNF19A, ring finger protein 19A, RBR E3 ubiquitin protein ligase, [Score=298, Expect=7e-91]} {Mouse: ENSMUSG00000022280, Rnf19a, ring finger protein 19A, [Score=297, Expect=1e-90]; ENSMUSG00000028793, Rnf19b, ring finger protein 19B, [Score=296, Expect=3e-91]} {Dmel: FBgn0025186, ari-2, ariadne 2, [Score=64.7, Expect=1e-10]} {Celegans: WBGene00015926, C17H11.6, [Score=289, Expect=1e-88]} {Smed: dd_Smed_v6_4771_0_1, dd_Smed_v6_4771_0_1, [Score=208, Expect=5e-59]} {RNA1509_14975} {RNA1310_7810.1} {RNA815_8054}

Mlig455_066054 {REF} {Length: 4302} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=76.1]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.4]; zinc-RING finger domain [PF14634.8, score=20.9]; RING-type zinc-finger [PF13445.8, score=20.0]} {Human: ENSG00000034677, RNF19A, ring finger protein 19A, RBR E3 ubiquitin protein ligase, [Score=399, Expect=3e-129]; ENSG00000116514, RNF19B, ring finger protein 19B, [Score=391, Expect=4e-127]} {Mouse: ENSMUSG00000022280, Rnf19a, ring finger protein 19A, [Score=398, Expect=7e-129]; ENSMUSG00000028793, Rnf19b, ring finger protein 19B, [Score=388, Expect=3e-126]} {Dmel: FBgn0025186, ari-2, ariadne 2, [Score=102, Expect=1e-22]} {Celegans: WBGene00015926, C17H11.6, [Score=377, Expect=9e-122]} {Smed: dd_Smed_v6_4771_0_1, dd_Smed_v6_4771_0_1, [Score=207, Expect=2e-58]} {RNA1509_14975} {RNA1310_7810.1} {RNA815_8054}

Cumulative graph for MligTC455_19981

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	0.269	5.029	0.79158	1.00000
RegionR2	-0.375	5.029	0.46259	0.84930
RegionR3	-0.125	5.029	0.75824	1.00000
RegionR4	1.293	5.029	0.00988	0.06046
RegionR5	0.602	5.029	0.10499	0.31512
RegionR6	-0.312	5.029	0.44790	1.00000
RegionR7	0.234	5.029	0.61413	1.00000
RegionR8	-1.587	5.029	0.01480	0.23741

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-1.699	5.029	0.30898	1.00000
RegenerationR2	0.088	5.029	0.84383	1.00000
RegenerationR3	-0.32	5.029	0.50972	0.86097
RegenerationR4	-0.727	5.029	0.15478	0.58526
RegenerationR5	-0.027	5.029	0.95222	1.00000
RegenerationR6	-0.088	5.029	0.85768	1.00000
RegenerationBL	0.594	5.029	0.24376	0.59776
RegenerationTP	0.037	5.029	0.95266	1.00000

Genes with expression patterns similar to MligTC455_19981

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_19981	1266	26.37	Mlig455_064493, Mlig455_066054	Neo: - Age: Down-Down-Up	RNF19A, RNF19B	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_064493 {REF} {Length: 2899} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=34.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.4]; zinc-RING finger domain [PF14634.8, score=20.9]; RING-type zinc-finger [PF13445.8, score=20.1]} {Human: ENSG00000116514, RNF19B, ring finger protein 19B, [Score=299, Expect=2e-92]; ENSG00000034677, RNF19A, ring finger protein 19A, RBR E3 ubiquitin protein ligase, [Score=298, Expect=7e-91]} {Mouse: ENSMUSG00000022280, Rnf19a, ring finger protein 19A, [Score=297, Expect=1e-90]; ENSMUSG00000028793, Rnf19b, ring finger protein 19B, [Score=296, Expect=3e-91]} {Dmel: FBgn0025186, ari-2, ariadne 2, [Score=64.7, Expect=1e-10]} {Celegans: WBGene00015926, C17H11.6, [Score=289, Expect=1e-88]} {Smed: dd_Smed_v6_4771_0_1, dd_Smed_v6_4771_0_1, [Score=208, Expect=5e-59]} {RNA1509_14975} {RNA1310_7810.1} {RNA815_8054} Mlig455_066054 {REF} {Length: 4302} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=76.1]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.4]; zinc-RING finger domain [PF14634.8, score=20.9]; RING-type zinc-finger [PF13445.8, score=20.0]} {Human: ENSG00000034677, RNF19A, ring finger protein 19A, RBR E3 ubiquitin protein ligase, [Score=399, Expect=3e-129]; ENSG00000116514, RNF19B, ring finger protein 19B, [Score=391, Expect=4e-127]} {Mouse: ENSMUSG00000022280, Rnf19a, ring finger protein 19A, [Score=398, Expect=7e-129]; ENSMUSG00000028793, Rnf19b, ring finger protein 19B, [Score=388, Expect=3e-126]} {Dmel: FBgn0025186, ari-2, ariadne 2, [Score=102, Expect=1e-22]} {Celegans: WBGene00015926, C17H11.6, [Score=377, Expect=9e-122]} {Smed: dd_Smed_v6_4771_0_1, dd_Smed_v6_4771_0_1, [Score=207, Expect=2e-58]} {RNA1509_14975} {RNA1310_7810.1} {RNA815_8054}
2.	MligTC455_47824	375	7.82	Mlig455_045590, Mlig455_045647	Neo: - Age: Up-Down-Down		1.737	0.762	0.975	-	-	-	-	Mlig455_045590 {REF} {Length: 6854} {TRANSSPLICED} {Pfam: Band 3 cytoplasmic domain [PF07565.15, score=20.5]} {Smed: dd_Smed_v6_9699_0_3, dd_Smed_v6_9699_0_3, [RH, Score=62.0, Expect=2e-09]} {RNA1509_11574} {RNA1310_1258} {RNA815_816} Mlig455_045647 {REF} {Length: 7619} {TRANSSPLICED} {Pfam: Band 3 cytoplasmic domain [PF07565.15, score=21.6]} {Smed: dd_Smed_v6_9699_0_3, dd_Smed_v6_9699_0_3, [RH, Score=62.0, Expect=2e-09]} {RNA1509_11574, RNA1509_19895} {RNA1310_1258, RNA1509_11574, RNA1509_19895} {RNA1509_11574, RNA1509_19895, RNA815_816}
3.	MligTC455_49357	638	13.3	Mlig455_060321	Neo: - Age: logFC(26M/2M)=-0.263	FXR1	1.681	-	-	-	-	0.962	0.719	Mlig455_060321 {REF} {Length: 4230} {Pfam: KH domain [PF00013.31, score=33.2]} {Human: ENSG00000114416, FXR1, FMR1 autosomal homolog 1, [Score=126, Expect=5e-30]; ENSG00000102081, FMR1, fragile X mental retardation 1, [Score=120, Expect=5e-28]} {Mouse: ENSMUSG00000027680, Fxr1, fragile X mental retardation gene 1, autosomal homolog, [Score=128, Expect=8e-31]} {Dmel: FBgn0028734, Fmr1, [Score=110, Expect=8e-25]} {RNA1509_47363} {RNA1310_8295} {RNA815_8865}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts