M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_20038

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_20038 1298 27.04 Mlig455_064087

Neo: -

Age: Down-Up-Up

 PPP1R11 Mlig455_064087 {REF} {Length: 705} {TRANSSPLICED} {Pfam: Protein phosphatase inhibitor [PF07491.13, score=67.0]} {Human: ENSG00000234058, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000236560, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000237829, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000204619, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000233314, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000227720, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000237403, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000206501, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]} {Mouse: ENSMUSG00000036398, Ppp1r11, protein phosphatase 1, regulatory inhibitor subunit 11, [RH, Score=57.4, Expect=2e-11]} {Dmel: FBgn0031772, CG13994, [RH, Score=61.6, Expect=5e-13]} {Celegans: WBGene00015579, C07H6.2, [RH, Score=71.2, Expect=2e-17]} {Smed: dd_Smed_v6_6328_0_1, dd_Smed_v6_6328_0_1, [RH, Score=56.2, Expect=1e-11]} {RNA1509_14125, RNA1509_19533} {RNA1310_49283, RNA1509_14125, RNA1509_19533} {RNA1509_14125, RNA1509_19533, RNA815_25271}

Cumulative graph for MligTC455_20038

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.693 4.989 0.07486 0.60591
RegionR2 -0.174 4.989 0.64676 0.98301
RegionR3 0.302 4.989 0.32623 0.86422
RegionR4 0.867 4.989 0.01917 0.09904
RegionR5 0.817 4.989 0.00405 0.02962
RegionR6 0.35 4.989 0.26749 0.85598
RegionR7 0.03 4.989 0.93564 1.00000
RegionR8 -0.501 4.989 0.29469 0.92345

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.911 4.989 0.59822 1.00000
RegenerationR2 -0.306 4.989 0.34114 0.77571
RegenerationR3 -0.371 4.989 0.28096 0.71319
RegenerationR4 -0.156 4.989 0.66268 0.93900
RegenerationR5 -0.307 4.989 0.34372 0.76026
RegenerationR6 -0.606 4.989 0.09070 0.37475
RegenerationBL -0.128 4.989 0.74291 1.00000
RegenerationTP -0.263 4.989 0.55108 0.93372


Genes with expression patterns similar to MligTC455_20038

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_20038 1298 27.04 Mlig455_064087

Neo: -

Age: Down-Up-Up

 PPP1R11 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_064087 {REF} {Length: 705} {TRANSSPLICED} {Pfam: Protein phosphatase inhibitor [PF07491.13, score=67.0]} {Human: ENSG00000234058, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000236560, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000237829, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000204619, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000233314, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000227720, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000237403, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]; ENSG00000206501, PPP1R11, protein phosphatase 1 regulatory inhibitor subunit 11, [RH, Score=56.6, Expect=4e-11]} {Mouse: ENSMUSG00000036398, Ppp1r11, protein phosphatase 1, regulatory inhibitor subunit 11, [RH, Score=57.4, Expect=2e-11]} {Dmel: FBgn0031772, CG13994, [RH, Score=61.6, Expect=5e-13]} {Celegans: WBGene00015579, C07H6.2, [RH, Score=71.2, Expect=2e-17]} {Smed: dd_Smed_v6_6328_0_1, dd_Smed_v6_6328_0_1, [RH, Score=56.2, Expect=1e-11]} {RNA1509_14125, RNA1509_19533} {RNA1310_49283, RNA1509_14125, RNA1509_19533} {RNA1509_14125, RNA1509_19533, RNA815_25271}
2. MligTC455_49580 900 18.76 Mlig455_002486

Neo: -

Age: Down-Down-Up

 NOCT 0.95 - - 0.950 - - - Mlig455_002486 {REF} {Length: 2303} {TRANSSPLICED} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=52.0]} {Human: ENSG00000151014, NOCT, nocturnin, [RH, Score=160, Expect=5e-45]} {Mouse: ENSMUSG00000023087, Noct, nocturnin, [RH, Score=164, Expect=5e-47]} {Dmel: FBgn0261808, cu, curled, [RH, Score=156, Expect=3e-42]} {Smed: dd_Smed_v6_11463_0_1, dd_Smed_v6_11463_0_1, [Score=65.9, Expect=1e-11]} {RNA1509_12828, RNA1509_14443, RNA1509_43001} {RNA1310_22622.1, RNA1509_12828, RNA1509_14443, RNA1509_43001} {RNA1509_12828, RNA1509_14443, RNA1509_43001, RNA815_6457}
3. MligTC455_53703 1243 25.89 Mlig455_035820

Neo: -

Age: -

 MEF2A 0.95 - - - - 0.950 - Mlig455_035820 {REF} {Length: 3672} {TRANSSPLICED} {Pfam: SRF-type transcription factor (DNA-binding and dimerisation domain) [PF00319.20, score=86.4]} {Human: ENSG00000068305, MEF2A, myocyte enhancer factor 2A, [RH, Score=194, Expect=4e-56]; ENSG00000081189, MEF2C, myocyte enhancer factor 2C, [RH, Score=192, Expect=8e-56]; ENSG00000116604, MEF2D, myocyte enhancer factor 2D, [RH, Score=190, Expect=2e-54]} {Mouse: ENSMUSG00000030557, Mef2a, myocyte enhancer factor 2A, [RH, Score=194, Expect=2e-56]; ENSMUSG00000005583, Mef2c, myocyte enhancer factor 2C, [RH, Score=193, Expect=4e-56]; ENSMUSG00000001419, Mef2d, myocyte enhancer factor 2D, [RH, Score=190, Expect=8e-55]} {Dmel: FBgn0011656, Mef2, Myocyte enhancer factor 2, [RH, Score=177, Expect=7e-50]} {Celegans: WBGene00003182, mef-2, Related to vertebrate MEF2 transcription factor, [RH, Score=188, Expect=7e-56]} {Smed: dd_Smed_v6_5317_0_1, dd_Smed_v6_5317_0_1, [RH, Score=171, Expect=1e-47]} {RNA1509_17387, RNA1509_26244, RNA1509_34022, RNA1509_49246, RNA1509_50913, RNA1509_56175} {RNA1310_3049.1, RNA1509_17387, RNA1509_26244, RNA1509_34022, RNA1509_49246, RNA1509_50913, RNA1509_56175} {RNA1509_17387, RNA1509_26244, RNA1509_34022, RNA1509_49246, RNA1509_50913, RNA1509_56175, RNA815_6369}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA