TomoSeq data search

Data search

Results for MligTC455_20080

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_20080	94	1.97	Mlig455_033439	Neo: - Age: -	KLHDC4	Mlig455_033439 {REF} {Length: 2452} {TRANSSPLICED} {Pfam: Galactose oxidase, central domain [PF13415.8, score=77.5]; Galactose oxidase, central domain [PF13418.8, score=69.6]; Kelch motif [PF13854.8, score=58.4]; Kelch motif [PF13964.8, score=54.3]; Kelch motif [PF07646.17, score=35.3]; Kelch motif [PF01344.27, score=34.4]} {Human: ENSG00000104731, KLHDC4, kelch domain containing 4, [RH, Score=217, Expect=4e-63]} {Mouse: ENSMUSG00000040263, Klhdc4, kelch domain containing 4, [RH, Score=210, Expect=5e-60]} {Dmel: FBgn0036301, CG4069, [RH, Score=240, Expect=3e-72]} {Celegans: WBGene00001827, hcf-1, HCF1 related; Host cell factor 1, [Score=64.7, Expect=1e-10]} {RNA1509_26313} {RNA1310_13537} {RNA815_16814.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_20080

1.97

Mlig455_033439

Neo: -

Age: -

KLHDC4

Mlig455_033439 {REF} {Length: 2452} {TRANSSPLICED} {Pfam: Galactose oxidase, central domain [PF13415.8, score=77.5]; Galactose oxidase, central domain [PF13418.8, score=69.6]; Kelch motif [PF13854.8, score=58.4]; Kelch motif [PF13964.8, score=54.3]; Kelch motif [PF07646.17, score=35.3]; Kelch motif [PF01344.27, score=34.4]} {Human: ENSG00000104731, KLHDC4, kelch domain containing 4, [RH, Score=217, Expect=4e-63]} {Mouse: ENSMUSG00000040263, Klhdc4, kelch domain containing 4, [RH, Score=210, Expect=5e-60]} {Dmel: FBgn0036301, CG4069, [RH, Score=240, Expect=3e-72]} {Celegans: WBGene00001827, hcf-1, HCF1 related; Host cell factor 1, [Score=64.7, Expect=1e-10]} {RNA1509_26313} {RNA1310_13537} {RNA815_16814.1}

Cumulative graph for MligTC455_20080

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-6.993	1.933	0.09627	0.65935
RegionR2	2	1.933	0.10550	0.40029
RegionR3	1.642	1.933	0.06474	0.44904
RegionR4	-0.835	1.933	0.98267	1.00000
RegionR5	0.852	1.933	0.36800	0.72065
RegionR6	1.47	1.933	0.13140	0.65282
RegionR7	-0.112	1.933	0.89716	1.00000
RegionR8	1.976	1.933	0.11823	0.63351

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	3.001	1.933	0.99984	1.00000
RegenerationR2	-0.181	1.933	0.82610	0.99615
RegenerationR3	0.928	1.933	0.22088	0.65686
RegenerationR4	0.757	1.933	0.41669	0.82409
RegenerationR5	0.924	1.933	0.17626	0.60574
RegenerationR6	0.358	1.933	0.67122	0.90924
RegenerationBL	-0.182	1.933	0.90863	1.00000
RegenerationTP	-3.719	1.933	0.12696	0.53894

Genes with expression patterns similar to MligTC455_20080

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_20080	94	1.97	Mlig455_033439	Neo: - Age: -	KLHDC4	4	1.000	1.000	-	-	1.000	1.000	Mlig455_033439 {REF} {Length: 2452} {TRANSSPLICED} {Pfam: Galactose oxidase, central domain [PF13415.8, score=77.5]; Galactose oxidase, central domain [PF13418.8, score=69.6]; Kelch motif [PF13854.8, score=58.4]; Kelch motif [PF13964.8, score=54.3]; Kelch motif [PF07646.17, score=35.3]; Kelch motif [PF01344.27, score=34.4]} {Human: ENSG00000104731, KLHDC4, kelch domain containing 4, [RH, Score=217, Expect=4e-63]} {Mouse: ENSMUSG00000040263, Klhdc4, kelch domain containing 4, [RH, Score=210, Expect=5e-60]} {Dmel: FBgn0036301, CG4069, [RH, Score=240, Expect=3e-72]} {Celegans: WBGene00001827, hcf-1, HCF1 related; Host cell factor 1, [Score=64.7, Expect=1e-10]} {RNA1509_26313} {RNA1310_13537} {RNA815_16814.1}
2.	MligTC455_48868	198	4.12	Mlig455_057233	Neo: - Age: -	CAPS2	0.955	-	-	-	-	0.955	-	Mlig455_057233 {REF} {Length: 3222} {TRANSSPLICED} {Human: ENSG00000180881, CAPS2, calcyphosine 2, [RH, Score=207, Expect=4e-60]} {Mouse: ENSMUSG00000035694, Caps2, calcyphosphine 2, [RH, Score=225, Expect=6e-65]} {Dmel: FBgn0051345, CG31345, [Score=63.5, Expect=4e-11]} {Smed: dd_Smed_v6_7209_0_1, dd_Smed_v6_7209_0_1, [Score=72.0, Expect=3e-14]} {RNA1509_44692} {RNA1310_9646.1} {RNA815_2138.1}
3.	MligTC455_09840	420	8.75	Mlig455_050348, Mlig455_050362	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-2.191	BCO2	0.951	-	-	-	-	-	0.951	Mlig455_050348 {REF} {Length: 3061} {Pfam: Retinal pigment epithelial membrane protein [PF03055.17, score=236.4]} {Human: ENSG00000197580, BCO2, beta-carotene oxygenase 2, [Score=110, Expect=2e-25]; ENSG00000135697, BCO1, beta-carotene oxygenase 1, [Score=106, Expect=9e-24]} {Mouse: ENSMUSG00000032066, Bco2, beta-carotene oxygenase 2, [Score=97.8, Expect=4e-21]; ENSMUSG00000028174, Rpe65, retinal pigment epithelium 65, [Score=97.1, Expect=7e-21]; ENSMUSG00000031845, Bco1, beta-carotene oxygenase 1, [Score=95.5, Expect=3e-20]} {Smed: dd_Smed_v6_4523_0_1, dd_Smed_v6_4523_0_1, [Score=67.4, Expect=9e-12]} {RNA1509_30736} {RNA1310_9061, RNA1509_30736} {RNA1509_30736, RNA815_3886} Mlig455_050362 {REF} {Length: 2942} {Pfam: Retinal pigment epithelial membrane protein [PF03055.17, score=236.4]} {Human: ENSG00000197580, BCO2, beta-carotene oxygenase 2, [Score=110, Expect=2e-25]; ENSG00000135697, BCO1, beta-carotene oxygenase 1, [Score=106, Expect=9e-24]} {Mouse: ENSMUSG00000032066, Bco2, beta-carotene oxygenase 2, [Score=97.8, Expect=4e-21]; ENSMUSG00000028174, Rpe65, retinal pigment epithelium 65, [Score=97.1, Expect=7e-21]; ENSMUSG00000031845, Bco1, beta-carotene oxygenase 1, [Score=95.5, Expect=3e-20]} {Smed: dd_Smed_v6_4523_0_1, dd_Smed_v6_4523_0_1, [Score=67.4, Expect=9e-12]} {RNA1509_30736} {RNA1310_9061} {RNA815_3886}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_20080

1.97

Mlig455_033439

Neo: -

Age: -

KLHDC4

1.000

MligTC455_48868

198

4.12

Mlig455_057233

Neo: -

Age: -

CAPS2

0.955

Mlig455_057233 {REF} {Length: 3222} {TRANSSPLICED} {Human: ENSG00000180881, CAPS2, calcyphosine 2, [RH, Score=207, Expect=4e-60]} {Mouse: ENSMUSG00000035694, Caps2, calcyphosphine 2, [RH, Score=225, Expect=6e-65]} {Dmel: FBgn0051345, CG31345, [Score=63.5, Expect=4e-11]} {Smed: dd_Smed_v6_7209_0_1, dd_Smed_v6_7209_0_1, [Score=72.0, Expect=3e-14]} {RNA1509_44692} {RNA1310_9646.1} {RNA815_2138.1}

MligTC455_09840

420

8.75

Mlig455_050348, Mlig455_050362

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-2.191

BCO2

0.951

Mlig455_050348 {REF} {Length: 3061} {Pfam: Retinal pigment epithelial membrane protein [PF03055.17, score=236.4]} {Human: ENSG00000197580, BCO2, beta-carotene oxygenase 2, [Score=110, Expect=2e-25]; ENSG00000135697, BCO1, beta-carotene oxygenase 1, [Score=106, Expect=9e-24]} {Mouse: ENSMUSG00000032066, Bco2, beta-carotene oxygenase 2, [Score=97.8, Expect=4e-21]; ENSMUSG00000028174, Rpe65, retinal pigment epithelium 65, [Score=97.1, Expect=7e-21]; ENSMUSG00000031845, Bco1, beta-carotene oxygenase 1, [Score=95.5, Expect=3e-20]} {Smed: dd_Smed_v6_4523_0_1, dd_Smed_v6_4523_0_1, [Score=67.4, Expect=9e-12]} {RNA1509_30736} {RNA1310_9061, RNA1509_30736} {RNA1509_30736, RNA815_3886}

Mlig455_050362 {REF} {Length: 2942} {Pfam: Retinal pigment epithelial membrane protein [PF03055.17, score=236.4]} {Human: ENSG00000197580, BCO2, beta-carotene oxygenase 2, [Score=110, Expect=2e-25]; ENSG00000135697, BCO1, beta-carotene oxygenase 1, [Score=106, Expect=9e-24]} {Mouse: ENSMUSG00000032066, Bco2, beta-carotene oxygenase 2, [Score=97.8, Expect=4e-21]; ENSMUSG00000028174, Rpe65, retinal pigment epithelium 65, [Score=97.1, Expect=7e-21]; ENSMUSG00000031845, Bco1, beta-carotene oxygenase 1, [Score=95.5, Expect=3e-20]} {Smed: dd_Smed_v6_4523_0_1, dd_Smed_v6_4523_0_1, [Score=67.4, Expect=9e-12]} {RNA1509_30736} {RNA1310_9061} {RNA815_3886}